Hi Spencer,
If you are interested I have implemented a (preliminary version) of a
superposition algorithm (similar to super) using Python/PyMOL.
Cheers,
Osvaldo.
On Wed, Nov 26, 2014 at 2:40 PM, Sampson, Jared <jared.samp...@nyumc.org>
wrote:
> Hi Spencer -
>
> If you need a superposition algorithm with a published reference, try
> CEAlign <http://www.pymolwiki.org/index.php/Cealign>. Some references
> are listed on the page for the former CEAlign Plugin
> <http://www.pymolwiki.org/index.php/Cealign_plugin#References> from
> before it was incorporated into PyMOL (in version 1.3).
>
> Just be careful to note that the order of the first two arguments
> (target, mobile) is switched compared to the `super` and `align` commands
> (mobile, target).
>
> Cheers,
> Jared
>
> --
> Jared Sampson
> Xiangpeng Kong Lab
> NYU Langone Medical Center
> http://kong.med.nyu.edu/
>
>
>
>
>
>
> On Nov 26, 2014, at 7:13 AM, Spencer Bliven <sbli...@ucsd.edu> wrote:
>
> I would also be interested if there is any documentation about the super
> algorithm and the differences to align.
>
> -Spencer
>
> On Fri, Nov 14, 2014 at 10:25 PM, Osvaldo Martin <aloctavo...@gmail.com>
> wrote:
>
>> Hi,
>>
>> Exactly which algorithm is behind the super command? How the outliers
>> pairs are defined? The is some scientific paper related to super or it is
>> really an experimental idea?
>>
>> Thanks.
>>
>>
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