Hi Duncan (and others). I've just turned off my virus scanner (MS Forefront Endpoint Protection).
The issue persists. It appears that the first time I call R CMD check, it deletes the previous rcheck folder, but tries to proceed before it is actually gone. By the time I reissue the command, the folder is truly gone, and the R CMD check can safely do its work. Is anyone else here using Win7 (32bit) and successfully building/checking R packages? Perhaps I'm the only one who has treaded this path :-) Nick Sabbe -- ping: nick.sa...@ugent.be link: http://biomath.ugent.be wink: A1.056, Coupure Links 653, 9000 Gent ring: 09/264.59.36 -- Do Not Disapprove > -----Original Message----- > From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com] > Sent: donderdag 22 september 2011 14:20 > To: Nick Sabbe > Cc: r-devel@r-project.org > Subject: Re: [Rd] R CMD check file issues > > On 11-09-22 7:53 AM, Nick Sabbe wrote: > > This problem is likely to be specific to Windows, and particularly > Win7. > > The symptoms sound like interference from an anti-virus checker. > > Duncan Murdoch > > > > > > > After a successful build of a package (R CMD build addendum), I > immediately > > run an R CMD check for the same package. > > > > Not always, but _very_ often, I get the following error: > > > > C:\Users\nisabbe\Documents\@Doctoraat\R>R CMD check addendum > > > > Loading required package: tcltk > > > > Loading Tcl/Tk interface ... done > > > > Loading required package: Hmisc > > > > Loading required package: survival > > > > Loading required package: stats > > > > Loading required package: graphics > > > > Loading required package: splines > > > > > > > > Attaching package: 'Hmisc' > > > > > > > > The following object(s) are masked from 'package:survival': > > > > > > > > untangle.specials > > > > > > > > The following object(s) are masked from 'package:base': > > > > > > > > format.pval, round.POSIXt, trunc.POSIXt, units > > > > > > > > Loading required package: R2HTML > > > > Warning in file(filename, "wt") : > > > > cannot open file > > 'C:/Users/nisabbe/Documents/@Doctoraat/R/addendum.Rcheck/00ch > > > > eck.log': Permission denied > > > > Error in file(filename, "wt") : cannot open the connection > > > > Execution halted > > > > > > > > If, after this, I immediately reissue the R CMD check command, it > works, > > without the error. > > > > I think this has something to do with how Win7 processes file > handling > > (there are known issues even noticeable in windows explorer), but > perhaps > > there is a way of circumventing this? It would be greatly > appreciated, as > > this issue is preventing automation of build/check/install scripts. > > > > > > > > Suggestions will be greatly appreciated. > > > > > > > > Nick Sabbe > > > > -- > > > > ping: nick.sa...@ugent.be > > > > link:<http://biomath.ugent.be/> http://biomath.ugent.be > > > > wink: A1.056, Coupure Links 653, 9000 Gent > > > > ring: 09/264.59.36 > > > > > > > > -- Do Not Disapprove > > > > > > > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-devel ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel