On Tue, 5 Mar 2013, Cook, Malcolm wrote:
Thus, I might rather consider an approach that at 'publish' time tarzips
up a copy of the R package dependencies based on a config file defined
from sessionInfo and caches it in the project directory.
If you had a separate environment for every project, each with its own R
installation and R installation lib.loc this becomes rather easy. For
instance, something like this:
myProject/
projectRInstallation/
bin/
R
library/
Biobase
annotate
.....
....
projectData/
projectCode/
projectOutput/
The directory structure would likely be more complicated than that but
something along those lines. This way all code, data *and* compute
environment are always linked together.
-J
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