Anybody know if it is possible to use texshop and knitr with the sync
working? I add a knitr engine but cannot sync.
PS, I am comfortable with texshop but not RStudio.
Huang
On Fri, Jan 18, 2013 at 7:33 AM, michele caseposta <mic.c...@gmail.com>wrote:
> Hi,
> I just updated R and patchDVI (from CRAN).
> Now I can reverse search from the pdf to the included.Rnw.
> However, I cannot forward search from the included to the pdf. Is this how
> it is expected to work?
> Forward and inverse search work between main Rnw and pdf.
>
> I am pasting below the code in the two files.
>
> %%%%%%%%% Sweavetest.Rnw %%%%%%%%%%%%
>
> \documentclass{article}
>
> \begin{document}
>
> \SweaveOpts{concordance=TRUE}
>
> \title{an Sweave inclusion test}
> \author{Michele}
>
> \maketitle
>
> This is an example for the inclusion of RNW files and forward-inverse
> search.
>
> following is a chunk of sweave code:
>
> <<>>=
> n <- 5
> for(i in 1:n){
> print(i)
> }
> @
>
> \section{text from an included file}
> \SweaveInput{included.Rnw}
>
> \end{document}
>
> %%%%%%%%% Included.Rnw %%%%%%%%%%%%
>
> % !Rnw root = Sweavetest.Rnw
>
> this is some text included in an Rnw file
>
> <<>>=
> for(i in 1:3){
> print('included')
> }
> @
>
>
>
> On Jan 11, 2013, at 5:38 AM, Duncan Murdoch wrote:
>
> > On 13-01-10 4:54 PM, michele caseposta wrote:
> >> Hi everybody,
> >> thanks for the replies.
> >> I might have not explained the problem completely.
> >> Duncan Mackay:
> >> Yes, I am already having a master file and separate Rnw files.
> >> Duncan Murdock:
> >> I am using patchDVI in the TexShop Sweave engine.
> >> Sync works flawlessly between the master file and the pdf produced by
> pdflatex.
> >>
> >> My problem is that I don't seem to be able to obtain sync between the
> *included* Rnws and the pdf, either way.
> >>
> >> The sweave engine is as follows:
> >>
> >> #!/bin/bash
> >>
> >> R CMD Sweave "$1"
> >> latexmk -pdf -silent -pdflatex=âpdflatex âshell-escape
> âsynctex=1â²"${1%.*}"
> >> Rscript -e "library(âpatchDVIâ);patchSynctex(â${1%.*}.synctex.gzâ)"
> >>
> >>
> >> Funny thing is that the sync works in texworks, using the following
> Rscript line
> >>
> >> patchDVI::SweavePDF('$fullname',stylepath=FALSE)
> >>
> >> I tried to mix and match configurations between texshop and texworks
> but I had no luck
> >
> > I just tried a simple example in TeXShop and it worked for me. My
> Sweave engine is
> >
> > #!/bin/tcsh
> >
> > # set path= ($path /usr/local/bin)
> > Rscript -e "patchDVI::SweavePDF( '$1' )"
> >
> >
> > So it seems to be work listing versions: On the Mac, I'm using R 2.15.0
> patched, rev 59478, with patchDVI version 1.8.1584 (I just uploaded 1.9 to
> CRAN, by the way), TeXShop version 2.43.
> >
> > It also works on Windows, where I have current releases of R and
> patchDVI installed.
> >
> > If you've got current versions of everything installed and it's still
> not working, could you try putting together a small reproducible example?
> >
> > Duncan Murdoch
> >
> >>
> >>
> >>
> >>
> >>
> >>
> >> On Jan 10, 2013, at 11:23 AM, Duncan Murdoch wrote:
> >>
> >>> On 13-01-09 9:09 PM, Duncan Murdoch wrote:
> >>>> On 13-01-09 3:25 PM, michele caseposta wrote:
> >>>>> Hello everyone.
> >>>>> I am in the process of writing a book in Latex with Texshop, on Mac.
> >>>>> This book contains a lot of R code, hence the need to use Sweave.
> >>>>> I was able to compile Rnw files, and to sync back and forth from the
> pdf to the source Rnw.
> >>>>> My problem now is that the book is divided in Chapters, and every
> chapter is in its own Rnw file.
> >>>>> I can compile them from the main one (book.Rnw) using the directive
> >>>>>
> >>>>> \SweaveInput{chapter1.Rnw}
> >>>>>
> >>>>> The problem stands in the fact that like this I am missing
> synchronization between the pdf and the source Rnw. If part of text is in
> book.Rnw I can synchronize, but if the text is in one of the included
> files, it just doesn't work.
> >>>>> I am using the sweave engine found in the following webpage:
> >>>>>
> >>>>>
> http://cameron.bracken.bz/synctex-with-sweavepgfsweave-in-texshoptexworks
> >>>>>
> >>>>> Has anybody succeeded in synchronizing with included Rnw files?
> >>>>
> >>>> This is a problem addressed by my patchDVI package, available on
> >>>> R-forge. You have a main file (which can be .tex or .Rnw), and put
> code
> >>>> at the start of each .Rnw file to indicate where to find it. Then you
> >>>> just run Sweave on one of the chapters, and it automatically produces
> >>>> the full document.
> >>>>
> >>>> The sample document here:
> >>>>
> >>>>
> http://www.umanitoba.ca/statistics/seminars/2011/3/4/duncan-murdoch-using-sweave-R/
> >>>>
> >>>> includes an appendix describing how to set this up with TeXShop.
> >>>
> >>> I just committed an update to the vignette in patchDVI giving a quick
> version of the instructions for basic use. Version 1.8.1585 has the new
> vignette.
> >>>
> >>> I should get around to pushing it to CRAN one of these days...
> >>>
> >>> Duncan Murdoch
> >>>
> >>
> >>
> >
>
> ______________________________________________
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