Hi, I'm trying to install R on CentOS 6.4.
Following some instructions online, I've done this: rpm -Uvh http://download.fedoraproject.org/pub/epel/6/i386/epel-release-6-8.noarch.rpm yum install R But yum fails, with this (full output below): Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1) Requires: libtcl8.4.so()(64bit) Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1) Requires: libtk8.4.so()(64bit) I have tcl/tk 8.5 already installed. Does anyone have any suggestion? Thanks! Full output: [root@picsl-cluster ~]# yum install R Repository base is listed more than once in the configuration Rocks-6.1 | 1.9 kB 00:00 base | 3.7 kB 00:00 Setting up Install Process Resolving Dependencies --> Running transaction check ---> Package R.x86_64 0:2.10.0-2.el5 will be installed --> Processing Dependency: libRmath-devel = 2.10.0-2.el5 for package: R-2.10.0-2.el5.x86_64 --> Processing Dependency: R-devel = 2.10.0-2.el5 for package: R-2.10.0-2.el5.x86_64 --> Running transaction check ---> Package R-devel.x86_64 0:2.10.0-2.el5 will be installed --> Processing Dependency: R-core = 2.10.0-2.el5 for package: R-devel-2.10.0-2.el5.x86_64 ---> Package libRmath-devel.x86_64 0:2.10.0-2.el5 will be installed --> Processing Dependency: libRmath = 2.10.0-2.el5 for package: libRmath-devel-2.10.0-2.el5.x86_64 --> Running transaction check ---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed --> Processing Dependency: libtk8.4.so()(64bit) for package: R-core-2.10.0-2.el5.x86_64 --> Processing Dependency: libtcl8.4.so()(64bit) for package: R-core-2.10.0-2.el5.x86_64 --> Processing Dependency: libgfortran.so.1()(64bit) for package: R-core-2.10.0-2.el5.x86_64 ---> Package libRmath.x86_64 0:2.10.0-2.el5 will be installed --> Running transaction check ---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed --> Processing Dependency: libtk8.4.so()(64bit) for package: R-core-2.10.0-2.el5.x86_64 --> Processing Dependency: libtcl8.4.so()(64bit) for package: R-core-2.10.0-2.el5.x86_64 ---> Package compat-libgfortran-41.x86_64 0:4.1.2-39.el6 will be installed --> Finished Dependency Resolution Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1) Requires: libtcl8.4.so()(64bit) Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1) Requires: libtk8.4.so()(64bit) You could try using --skip-broken to work around the problem ** Found 57 pre-existing rpmdb problem(s), 'yum check' output follows: foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Client) foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Core) foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Delta) foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Ra) 1:guestfish-1.7.17-26.el6.x86_64 has missing requires of libguestfs = ('1', '1.7.17', '26.el6') opt-perl-AcePerl-1.92-0.el6.x86_64 has missing requires of perl(Ace::Browser::LocalSiteDefs) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Apache::DBI) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::ASN1::EntrezGene) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Expression::Contact) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Expression::DataSet) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Expression::Platform) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Expression::Sample) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Factory) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Forest::Tree) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::IO) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Matrices) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Matrices::Datum) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Matrices::Matrix) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Convert::Binary::C) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(DBD::Pg) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(PostScript::TextBlock) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Test::Exception) opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Test::Warn) opt-perl-BioPerl-DB-1.006900-0.el6.noarch has missing requires of perl(DBD::Oracle) opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of perl(Bio::Tools::Run::StandAloneBlastPlus::BlastMethods) opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of perl(Bio::Tools::Run::WrapperBase::CommandExts) opt-perl-Cache-Cache-1.06-0.el6.noarch has missing requires of perl(IPC::ShareLite) opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro) opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Handle) opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Select) opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlClient) >= ('0', '0.2000', None) opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlServer) >= ('0', '0.2001', None) opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Win32::ODBC) opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk) opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Label) opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Tree) opt-perl-Digest-Perl-MD5-1.8-0.el6.noarch has missing requires of /usr/bin/false opt-perl-HTTP-Cookies-6.01-0.el6.noarch has missing requires of perl(Win32) opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of perl(Win32::Process) opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of perl(Win32API::File) opt-perl-MLDBM-2.04-0.el6.noarch has missing requires of perl(FreezeThaw) opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of perl(Moose::Conflicts) opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of perl(Moose::Error::Util) opt-perl-Package-Stash-0.33-0.el6.noarch has missing requires of perl(Package::Stash::Conflicts) opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of perl(MIME::Lite) opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of perl(SOAP::Transport::TCP) opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of perl(Jcode) opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of perl(Spreadsheet::WriteExcel) opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of perl(Unicode::Map) opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of perl(XML::SAX::PurePerl::DTDDecls) opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of perl(XML::SAX::PurePerl::DocType) opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of perl(XML::SAX::PurePerl::EncodingDetect) opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of perl(XML::SAX::PurePerl::XMLDecl) opt-perl-YAML-0.84-0.el6.noarch has missing requires of perl(Test::Base) >= ('0', '0.47', None) opt-perl-YAML-0.84-0.el6.noarch has missing requires of perl(Test::Base::Filter) opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of perl(Authen::NTLM) opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of perl(HTTP::GHTTP) [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list 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