On 25/10/2013 02:33, Michael Stauffer wrote:
Hi,
I'm trying to install R on CentOS 6.4.
This is not the right list. But
- As the posting guide says, we only support current R here. R 2.10.0
is ancient, and other people seem to have found 3.0.1 RPMs for Centos 6.3.
- It seems your RPM is linked against Tcl/Tk 8.4, also ancient. Tcl/Tk
8.6 is current.
I suggest you install R 3.0.2 from the sources, in which case R-devel
would be the right list. For binary installations on CentOS,
R-sig-Fedora is.
Following some instructions online, I've done this:
rpm -Uvh
http://download.fedoraproject.org/pub/epel/6/i386/epel-release-6-8.noarch.rpm
yum install R
But yum fails, with this (full output below):
Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
Requires: libtcl8.4.so()(64bit)
Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
Requires: libtk8.4.so()(64bit)
I have tcl/tk 8.5 already installed. Does anyone have any suggestion?
Thanks!
Full output:
[root@picsl-cluster ~]# yum install R
Repository base is listed more than once in the configuration
Rocks-6.1
| 1.9 kB 00:00
base
| 3.7 kB 00:00
Setting up Install Process
Resolving Dependencies
--> Running transaction check
---> Package R.x86_64 0:2.10.0-2.el5 will be installed
--> Processing Dependency: libRmath-devel = 2.10.0-2.el5 for package:
R-2.10.0-2.el5.x86_64
--> Processing Dependency: R-devel = 2.10.0-2.el5 for package:
R-2.10.0-2.el5.x86_64
--> Running transaction check
---> Package R-devel.x86_64 0:2.10.0-2.el5 will be installed
--> Processing Dependency: R-core = 2.10.0-2.el5 for package:
R-devel-2.10.0-2.el5.x86_64
---> Package libRmath-devel.x86_64 0:2.10.0-2.el5 will be installed
--> Processing Dependency: libRmath = 2.10.0-2.el5 for package:
libRmath-devel-2.10.0-2.el5.x86_64
--> Running transaction check
---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed
--> Processing Dependency: libtk8.4.so()(64bit) for package:
R-core-2.10.0-2.el5.x86_64
--> Processing Dependency: libtcl8.4.so()(64bit) for package:
R-core-2.10.0-2.el5.x86_64
--> Processing Dependency: libgfortran.so.1()(64bit) for package:
R-core-2.10.0-2.el5.x86_64
---> Package libRmath.x86_64 0:2.10.0-2.el5 will be installed
--> Running transaction check
---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed
--> Processing Dependency: libtk8.4.so()(64bit) for package:
R-core-2.10.0-2.el5.x86_64
--> Processing Dependency: libtcl8.4.so()(64bit) for package:
R-core-2.10.0-2.el5.x86_64
---> Package compat-libgfortran-41.x86_64 0:4.1.2-39.el6 will be installed
--> Finished Dependency Resolution
Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
Requires: libtcl8.4.so()(64bit)
Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
Requires: libtk8.4.so()(64bit)
You could try using --skip-broken to work around the problem
** Found 57 pre-existing rpmdb problem(s), 'yum check' output follows:
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Client)
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Core)
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Delta)
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Ra)
1:guestfish-1.7.17-26.el6.x86_64 has missing requires of libguestfs = ('1',
'1.7.17', '26.el6')
opt-perl-AcePerl-1.92-0.el6.x86_64 has missing requires of
perl(Ace::Browser::LocalSiteDefs)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Apache::DBI)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::ASN1::EntrezGene)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Expression::Contact)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Expression::DataSet)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Expression::Platform)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Expression::Sample)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Phylo::Factory)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Phylo::Forest::Tree)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Phylo::IO)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Phylo::Matrices)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Phylo::Matrices::Datum)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Phylo::Matrices::Matrix)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Convert::Binary::C)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(DBD::Pg)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(PostScript::TextBlock)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Test::Exception)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Test::Warn)
opt-perl-BioPerl-DB-1.006900-0.el6.noarch has missing requires of
perl(DBD::Oracle)
opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of
perl(Bio::Tools::Run::StandAloneBlastPlus::BlastMethods)
opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of
perl(Bio::Tools::Run::WrapperBase::CommandExts)
opt-perl-Cache-Cache-1.06-0.el6.noarch has missing requires of
perl(IPC::ShareLite)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Handle)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Select)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlClient)
= ('0', '0.2000', None)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlServer)
= ('0', '0.2001', None)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Win32::ODBC)
opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk)
opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Label)
opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Tree)
opt-perl-Digest-Perl-MD5-1.8-0.el6.noarch has missing requires of
/usr/bin/false
opt-perl-HTTP-Cookies-6.01-0.el6.noarch has missing requires of perl(Win32)
opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of
perl(Win32::Process)
opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of
perl(Win32API::File)
opt-perl-MLDBM-2.04-0.el6.noarch has missing requires of perl(FreezeThaw)
opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of
perl(Moose::Conflicts)
opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of
perl(Moose::Error::Util)
opt-perl-Package-Stash-0.33-0.el6.noarch has missing requires of
perl(Package::Stash::Conflicts)
opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of
perl(MIME::Lite)
opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of
perl(SOAP::Transport::TCP)
opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
perl(Jcode)
opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
perl(Spreadsheet::WriteExcel)
opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
perl(Unicode::Map)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
perl(XML::SAX::PurePerl::DTDDecls)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
perl(XML::SAX::PurePerl::DocType)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
perl(XML::SAX::PurePerl::EncodingDetect)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
perl(XML::SAX::PurePerl::XMLDecl)
opt-perl-YAML-0.84-0.el6.noarch has missing requires of perl(Test::Base) >=
('0', '0.47', None)
opt-perl-YAML-0.84-0.el6.noarch has missing requires of
perl(Test::Base::Filter)
opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of
perl(Authen::NTLM)
opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of
perl(HTTP::GHTTP)
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.