Hello, Do you have headers installed (generally tcl-devel and tk-devel)?
Regards, Pascal On 25 October 2013 10:33, Michael Stauffer <mgsta...@gmail.com> wrote: > Hi, > > I'm trying to install R on CentOS 6.4. > > Following some instructions online, I've done this: > > rpm -Uvh > http://download.fedoraproject.org/pub/epel/6/i386/epel-release-6-8.noarch.rpm > > yum install R > > But yum fails, with this (full output below): > > Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1) > Requires: libtcl8.4.so()(64bit) > Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1) > Requires: libtk8.4.so()(64bit) > > I have tcl/tk 8.5 already installed. Does anyone have any suggestion? > Thanks! > > Full output: > > [root@picsl-cluster ~]# yum install R > Repository base is listed more than once in the configuration > Rocks-6.1 > | 1.9 kB 00:00 > base > | 3.7 kB 00:00 > Setting up Install Process > Resolving Dependencies > --> Running transaction check > ---> Package R.x86_64 0:2.10.0-2.el5 will be installed > --> Processing Dependency: libRmath-devel = 2.10.0-2.el5 for package: > R-2.10.0-2.el5.x86_64 > --> Processing Dependency: R-devel = 2.10.0-2.el5 for package: > R-2.10.0-2.el5.x86_64 > --> Running transaction check > ---> Package R-devel.x86_64 0:2.10.0-2.el5 will be installed > --> Processing Dependency: R-core = 2.10.0-2.el5 for package: > R-devel-2.10.0-2.el5.x86_64 > ---> Package libRmath-devel.x86_64 0:2.10.0-2.el5 will be installed > --> Processing Dependency: libRmath = 2.10.0-2.el5 for package: > libRmath-devel-2.10.0-2.el5.x86_64 > --> Running transaction check > ---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed > --> Processing Dependency: libtk8.4.so()(64bit) for package: > R-core-2.10.0-2.el5.x86_64 > --> Processing Dependency: libtcl8.4.so()(64bit) for package: > R-core-2.10.0-2.el5.x86_64 > --> Processing Dependency: libgfortran.so.1()(64bit) for package: > R-core-2.10.0-2.el5.x86_64 > ---> Package libRmath.x86_64 0:2.10.0-2.el5 will be installed > --> Running transaction check > ---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed > --> Processing Dependency: libtk8.4.so()(64bit) for package: > R-core-2.10.0-2.el5.x86_64 > --> Processing Dependency: libtcl8.4.so()(64bit) for package: > R-core-2.10.0-2.el5.x86_64 > ---> Package compat-libgfortran-41.x86_64 0:4.1.2-39.el6 will be installed > --> Finished Dependency Resolution > Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1) > Requires: libtcl8.4.so()(64bit) > Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1) > Requires: libtk8.4.so()(64bit) > You could try using --skip-broken to work around the problem > ** Found 57 pre-existing rpmdb problem(s), 'yum check' output follows: > foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Client) > foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Core) > foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Delta) > foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Ra) > 1:guestfish-1.7.17-26.el6.x86_64 has missing requires of libguestfs = ('1', > '1.7.17', '26.el6') > opt-perl-AcePerl-1.92-0.el6.x86_64 has missing requires of > perl(Ace::Browser::LocalSiteDefs) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Apache::DBI) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Bio::ASN1::EntrezGene) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Bio::Expression::Contact) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Bio::Expression::DataSet) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Bio::Expression::Platform) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Bio::Expression::Sample) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Bio::Phylo::Factory) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Bio::Phylo::Forest::Tree) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Bio::Phylo::IO) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Bio::Phylo::Matrices) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Bio::Phylo::Matrices::Datum) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Bio::Phylo::Matrices::Matrix) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Convert::Binary::C) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(DBD::Pg) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(PostScript::TextBlock) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Test::Exception) > opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of > perl(Test::Warn) > opt-perl-BioPerl-DB-1.006900-0.el6.noarch has missing requires of > perl(DBD::Oracle) > opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of > perl(Bio::Tools::Run::StandAloneBlastPlus::BlastMethods) > opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of > perl(Bio::Tools::Run::WrapperBase::CommandExts) > opt-perl-Cache-Cache-1.06-0.el6.noarch has missing requires of > perl(IPC::ShareLite) > opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro) > opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Handle) > opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Select) > opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlClient) >>= ('0', '0.2000', None) > opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlServer) >>= ('0', '0.2001', None) > opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Win32::ODBC) > opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk) > opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Label) > opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Tree) > opt-perl-Digest-Perl-MD5-1.8-0.el6.noarch has missing requires of > /usr/bin/false > opt-perl-HTTP-Cookies-6.01-0.el6.noarch has missing requires of perl(Win32) > opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of > perl(Win32::Process) > opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of > perl(Win32API::File) > opt-perl-MLDBM-2.04-0.el6.noarch has missing requires of perl(FreezeThaw) > opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of > perl(Moose::Conflicts) > opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of > perl(Moose::Error::Util) > opt-perl-Package-Stash-0.33-0.el6.noarch has missing requires of > perl(Package::Stash::Conflicts) > opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of > perl(MIME::Lite) > opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of > perl(SOAP::Transport::TCP) > opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of > perl(Jcode) > opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of > perl(Spreadsheet::WriteExcel) > opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of > perl(Unicode::Map) > opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of > perl(XML::SAX::PurePerl::DTDDecls) > opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of > perl(XML::SAX::PurePerl::DocType) > opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of > perl(XML::SAX::PurePerl::EncodingDetect) > opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of > perl(XML::SAX::PurePerl::XMLDecl) > opt-perl-YAML-0.84-0.el6.noarch has missing requires of perl(Test::Base) >= > ('0', '0.47', None) > opt-perl-YAML-0.84-0.el6.noarch has missing requires of > perl(Test::Base::Filter) > opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of > perl(Authen::NTLM) > opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of > perl(HTTP::GHTTP) > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. -- Pascal Oettli Project Scientist JAMSTEC Yokohama, Japan ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.