Thanks, Michael. Is that after compiling form source? or a version of R from ubnutu/apt-get?
My issues were from R 2.9 and 2.8 compiled from source. However, this has never been a problem before. -Whit On Mon, May 4, 2009 at 5:53 PM, Michael Rutter <ma...@psu.edu> wrote: > Whit, > > I ran the same command on my Jaunty system and got the following: > > mrut...@yorick ~/D/R_Stuff> R CMD config JAVA_CPPFLAGS > -I/usr/lib/jvm/java-6-openjdk/jre/../include > > A quick check of my java related packages: > > ca-certificates-java install > java-common install > libaccess-bridge-java install > sun-java6-bin install > sun-java6-jre install > tzdata-java install > > Maybe this will help. > > Micheal > > On Sun, May 3, 2009 at 7:52 PM, Whit Armstrong <armstrong.w...@gmail.com> > wrote: >> This is happening to me with R 2.9 and 2.8 on jaunty. >> >> w...@spartan:~$ R CMD config JAVA_CPPFLAGS >> ~autodetect~ >> w...@spartan:~$ >> >> >> I can see the "~autodetect~" strings here: >> https://svn.r-project.org/R/trunk/m4/java.m4 >> >> but JAVA_LIBS ends up being the correct value in my installation: >> >> w...@spartan:~/dvl/R.packages$ R CMD config JAVA_LIBS >> -L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server >> -L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64 >> -L/usr/lib/jvm/java-6-openjdk/jre/../lib/amd64 -L/usr/local/lib64 >> -L/usr/java/packages/lib/amd64 -L/usr/lib64 -L/lib64 -L/lib -L/usr/lib >> -ljvm >> w...@spartan:~/dvl/R.packages$ R CMD config JAVA_CPPFLAGS >> ~autodetect~ >> w...@spartan:~/dvl/R.packages$ >> >> -Whit >> >> _______________________________________________ >> R-SIG-Debian mailing list >> R-SIG-Debian@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-debian >> > > > > -- > Dr. Michael A. Rutter > School of Science > Penn State Erie, The Behrend College > Station Road > Erie, PA 16563 > http://math.bd.psu.edu/faculty/rutter > _______________________________________________ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian