Whit, Those results came for the apt-get binaries available on CRAN. I would recommend those, as we update them very quickly and there are fewer issues like the one you are having.
Michael On Mon, May 4, 2009 at 9:29 PM, Whit Armstrong <armstrong.w...@gmail.com> wrote: > Thanks, Michael. > > Is that after compiling form source? or a version of R from ubnutu/apt-get? > > My issues were from R 2.9 and 2.8 compiled from source. However, this > has never been a problem before. > > -Whit > > On Mon, May 4, 2009 at 5:53 PM, Michael Rutter <ma...@psu.edu> wrote: >> Whit, >> >> I ran the same command on my Jaunty system and got the following: >> >> mrut...@yorick ~/D/R_Stuff> R CMD config JAVA_CPPFLAGS >> -I/usr/lib/jvm/java-6-openjdk/jre/../include >> >> A quick check of my java related packages: >> >> ca-certificates-java install >> java-common install >> libaccess-bridge-java install >> sun-java6-bin install >> sun-java6-jre install >> tzdata-java install >> >> Maybe this will help. >> >> Micheal >> >> On Sun, May 3, 2009 at 7:52 PM, Whit Armstrong <armstrong.w...@gmail.com> >> wrote: >>> This is happening to me with R 2.9 and 2.8 on jaunty. >>> >>> w...@spartan:~$ R CMD config JAVA_CPPFLAGS >>> ~autodetect~ >>> w...@spartan:~$ >>> >>> >>> I can see the "~autodetect~" strings here: >>> https://svn.r-project.org/R/trunk/m4/java.m4 >>> >>> but JAVA_LIBS ends up being the correct value in my installation: >>> >>> w...@spartan:~/dvl/R.packages$ R CMD config JAVA_LIBS >>> -L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server >>> -L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64 >>> -L/usr/lib/jvm/java-6-openjdk/jre/../lib/amd64 -L/usr/local/lib64 >>> -L/usr/java/packages/lib/amd64 -L/usr/lib64 -L/lib64 -L/lib -L/usr/lib >>> -ljvm >>> w...@spartan:~/dvl/R.packages$ R CMD config JAVA_CPPFLAGS >>> ~autodetect~ >>> w...@spartan:~/dvl/R.packages$ >>> >>> -Whit >>> >>> _______________________________________________ >>> R-SIG-Debian mailing list >>> R-SIG-Debian@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-debian >>> >> >> >> >> -- >> Dr. Michael A. Rutter >> School of Science >> Penn State Erie, The Behrend College >> Station Road >> Erie, PA 16563 >> http://math.bd.psu.edu/faculty/rutter >> > -- Dr. Michael A. Rutter School of Science Penn State Erie, The Behrend College Station Road Erie, PA 16563 http://math.bd.psu.edu/faculty/rutter _______________________________________________ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian