Hi, <This issue was previously posted in R-help, but advised to post here as a more relevant group>
I was trying to install RQuantLib in my Ubuntu machine which failed with below information : *> install.packages('RQuantLib', repos='http://cran.rstudio.com/ <http://cran.rstudio.com/>', INSTALL_opts = c('--no-lock'))* *Installing package into ‘/usr/local/lib/R/site-library’* *(as ‘lib’ is unspecified)* *trying URL 'http://cran.rstudio.com/src/contrib/RQuantLib_0.4.7.tar.gz <http://cran.rstudio.com/src/contrib/RQuantLib_0.4.7.tar.gz>'* *Content type 'application/x-gzip' length 189726 bytes (185 KB)* *==================================================* *downloaded 185 KB* ** installing *source* package ‘RQuantLib’ ...* *** package ‘RQuantLib’ successfully unpacked and MD5 sums checked* *checking whether the C++ compiler works... yes* *checking for C++ compiler default output file name... a.out* *checking for suffix of executables... * *checking whether we are cross compiling... no* *checking for suffix of object files... o* *checking whether we are using the GNU C++ compiler... yes* *checking whether g++ accepts -g... yes* *checking how to run the C++ preprocessor... g++ -E* *checking whether we are using the GNU C++ compiler... (cached) yes* *checking whether g++ accepts -g... (cached) yes* *checking for R... yes* *checking for quantlib-config... yes* *checking for Boost development files... yes* *checking for minimal Boost version... yes* *configure: creating ./config.status* *config.status: creating src/Makevars* *Completed configuration and ready to build.* *** libs* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c affine.cpp -o affine.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c asian.cpp -o asian.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c barrier_binary.cpp -o barrier_binary.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bermudan.cpp -o bermudan.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bonds.cpp -o bonds.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c calendars.cpp -o calendars.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c curves.cpp -o curves.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dates.cpp -o dates.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c daycounter.cpp -o daycounter.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c discount.cpp -o discount.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hullwhite.cpp -o hullwhite.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c implieds.cpp -o implieds.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modules.cpp -o modules.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sabr.cpp -o sabr.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c schedule.cpp -o schedule.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vanilla.cpp -o vanilla.o* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zero.cpp -o zero.o* *g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o RQuantLib.so RcppExports.o affine.o asian.o barrier_binary.o bermudan.o bonds.o calendars.o curves.o dates.o daycounter.o discount.o hullwhite.o implieds.o modules.o sabr.o schedule.o utils.o vanilla.o zero.o -L/usr/local/lib -lQuantLib -fopenmp -L/usr/lib/R/lib -lR* *installing to /usr/local/lib/R/site-library/RQuantLib/libs* *** R* *** data* *** demo* *** inst* *** preparing package for lazy loading* *** help* **** installing help indices* *** building package indices* *** testing if installed package can be loaded* * *** caught segfault **** *address 0x7f255e91a9a0, cause 'invalid permissions'* *Traceback:* * 1: dyn.load(file, DLLpath = DLLpath, ...)* * 2: library.dynam(lib, package, package.lib)* * 3: loadNamespace(package, lib.loc)* * 4: doTryCatch(return(expr), name, parentenv, handler)* * 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])* * 6: tryCatchList(expr, classes, parentenv, handlers)* * 7: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)})* * 8: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)* * 9: withCallingHandlers(expr, packageStartupMessage = function(c) invokeRestart("muffleMessage"))* *10: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))* *11: doTryCatch(return(expr), name, parentenv, handler)* *12: tryCatchOne(expr, names, parentenv, handlers[[1L]])* *13: tryCatchList(expr, classes, parentenv, handlers)* *14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na <http://is.na>(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})* *15: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)))* *16: tools:::.test_load_package("RQuantLib", "/usr/local/lib/R/site-library")* *An irrecoverable exception occurred. R is aborting now ...* *Segmentation fault (core dumped)* *ERROR: loading failed* ** removing ‘/usr/local/lib/R/site-library/RQuantLib’* *The downloaded source packages are in* * ‘/tmp/RtmpKTXorW/downloaded_packages’* *Warning message:* *In install.packages("RQuantLib", repos = "http://cran.rstudio.com/ <http://cran.rstudio.com/>", :* * installation of package ‘RQuantLib’ had non-zero exit status* Next I tried with Dirk Eddelbuettel's advice as follows sudo apt-get install r-cran-rquantlib Reading package lists... Done Building dependency tree Reading state information... Done The following packages were automatically installed and are no longer required: grub-pc-bin libgsasl7 libkyotocabinet16v5 libntlm0 linux-headers-4.4.0-116 linux-headers-4.4.0-116-generic linux-headers-4.4.0-119 linux-headers-4.4.0-119-generic linux-headers-4.4.0-121 linux-headers-4.4.0-121-generic linux-headers-4.4.0-124 linux-headers-4.4.0-124-generic linux-headers-4.4.0-127 linux-headers-4.4.0-127-generic linux-headers-4.4.0-128 linux-headers-4.4.0-128-generic linux-headers-4.4.0-130 linux-headers-4.4.0-130-generic linux-headers-4.4.0-134 linux-headers-4.4.0-134-generic linux-headers-4.4.0-137 linux-headers-4.4.0-137-generic linux-headers-4.4.0-138 linux-headers-4.4.0-138-generic linux-image-4.4.0-116-generic linux-image-4.4.0-119-generic linux-image-4.4.0-121-generic linux-image-4.4.0-124-generic linux-image-4.4.0-127-generic linux-image-4.4.0-128-generic linux-image-4.4.0-130-generic linux-image-4.4.0-134-generic linux-image-4.4.0-137-generic linux-image-4.4.0-138-generic mailutils-common Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: libquantlib0v5 littler r-cran-littler r-cran-pkgkitten r-cran-rcpp Suggested packages: r-cran-getopt r-cran-inline The following NEW packages will be installed: libquantlib0v5 littler r-cran-littler r-cran-pkgkitten r-cran-rcpp r-cran-rquantlib 0 upgraded, 6 newly installed, 0 to remove and 177 not upgraded. Need to get 11.2 MB of archives. After this operation, 52.9 MB of additional disk space will be used. Do you want to continue? [Y/n] Y Get:2 http://ppa.launchpad.net/edd/misc/ubuntu xenial/main amd64 libquantlib0v5 amd64 1.10-1xenial1 [7,966 kB] Get:3 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-littler 0.3.3-1xenial0 [336 kB] Get:1 http://sgp1.mirrors.digitalocean.com/ubuntu xenial/universe amd64 r-cran-pkgkitten all 0.1.3-1 [17.7 kB] Get:4 http://sgp1.mirrors.digitalocean.com/ubuntu xenial/universe amd64 r-cran-rcpp amd64 0.12.3-1 [2,073 kB] Get:6 http://cran.rstudio.com/bin/linux/ubuntu xenial/ littler 0.3.3-1xenial0 [12.5 kB] Get:5 http://sgp1.mirrors.digitalocean.com/ubuntu xenial/universe amd64 r-cran-rquantlib amd64 0.4.2-1 [805 kB] Fetched 11.2 MB in 8s (1,321 kB/s) Selecting previously unselected package libquantlib0v5. (Reading database ... 552387 files and directories currently installed.) Preparing to unpack .../libquantlib0v5_1.10-1xenial1_amd64.deb ... Unpacking libquantlib0v5 (1.10-1xenial1) ... Selecting previously unselected package r-cran-littler. Preparing to unpack .../r-cran-littler_0.3.3-1xenial0_amd64.deb ... Unpacking r-cran-littler (0.3.3-1xenial0) ... Selecting previously unselected package littler. Preparing to unpack .../littler_0.3.3-1xenial0_all.deb ... Unpacking littler (0.3.3-1xenial0) ... Selecting previously unselected package r-cran-pkgkitten. Preparing to unpack .../r-cran-pkgkitten_0.1.3-1_all.deb ... Unpacking r-cran-pkgkitten (0.1.3-1) ... Selecting previously unselected package r-cran-rcpp. Preparing to unpack .../r-cran-rcpp_0.12.3-1_amd64.deb ... Unpacking r-cran-rcpp (0.12.3-1) ... Selecting previously unselected package r-cran-rquantlib. Preparing to unpack .../r-cran-rquantlib_0.4.2-1_amd64.deb ... Unpacking r-cran-rquantlib (0.4.2-1) ... Processing triggers for libc-bin (2.23-0ubuntu10) ... Processing triggers for man-db (2.7.5-1) ... Setting up libquantlib0v5 (1.10-1xenial1) ... Setting up r-cran-littler (0.3.3-1xenial0) ... Setting up littler (0.3.3-1xenial0) ... Setting up r-cran-pkgkitten (0.1.3-1) ... Setting up r-cran-rcpp (0.12.3-1) ... Setting up r-cran-rquantlib (0.4.2-1) ... Processing triggers for libc-bin (2.23-0ubuntu10) ... But it also failed when I tried to load the package in R console. *> library(RQuantLib)* *Error: package or namespace load failed for ‘RQuantLib’ in dyn.load(file, DLLpath = DLLpath, ...):* * unable to load shared object '/usr/lib/R/site-library/RQuantLib/libs/RQuantLib.so':* * /usr/lib/R/site-library/RQuantLib/libs/RQuantLib.so: undefined symbol: _ZN8QuantLib11daysBetweenERKNS_4DateES2_* *> ls('package:RQuantLib')* *Error in as.environment(pos) : * * no item called "package:RQuantLib" on the search list* Any advice on how to correctly install it will be highly helpful. Relevant R info: *> sessionInfo()* *R version 3.4.4 (2018-03-15)* *Platform: x86_64-pc-linux-gnu (64-bit)* *Running under: Ubuntu 16.04.4 LTS* *Matrix products: default* *BLAS: /usr/lib/libblas/libblas.so.3.6.0* *LAPACK: /usr/lib/lapack/liblapack.so.3.6.0* *locale:* * [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C * * [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 * * [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 * * [7] LC_PAPER=en_US.UTF-8 LC_NAME=C * * [9] LC_ADDRESS=C LC_TELEPHONE=C * *[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C * *attached base packages:* *[1] stats graphics grDevices utils datasets methods base * *loaded via a namespace (and not attached):* *[1] compiler_3.4.4 Rcpp_0.12.19 * Thanks, [[alternative HTML version deleted]] _______________________________________________ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian