I do not believe gfortran comes with OS X, so I installed the latest version. R was picking up a version that had been installed with octave, which is why I needed to make some changes as I did not want to link R libs with something packaged with octave (because if i update or remove octave all my R libs will break).
I don't think that is a material part of the issue, and doing some digging I see it is not just my machine: http://cran.r-project.org/web/checks/check_results_LogicReg.html http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/LogicReg-00install.html Which shows the same error. Can you build the package OK? Thanks On Tue, Jan 17, 2012 at 1:16 AM, Kasper Daniel Hansen <kasperdanielhan...@gmail.com> wrote: > On Mon, Jan 16, 2012 at 2:57 AM, BEES INC <bees....@gmail.com> wrote: >> Hey there >> >> I am having a bit of trouble getting this working, I had to do a bit >> of fiddling with makefiles to get it to find the right gfortran, but >> it builds & links without error, however the install gives the >> following error: > > You have used some special (?) gfortran at compile time (based on the > above, but I am not sure). This may not work with R that has been > compiled with another gfortran and it might also not work at run time. > > We really need more information about exactly what you have done. > > Kasper > > >> >> Error in dyn.load(file, DLLpath = DLLpath, ...) : >> unable to load shared object >> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so': >> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so, >> 6): no suitable image found. Did find: >> >> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so: >> out of address space >> >> Full install is as follows: >> >> $ R CMD INSTALL --no-multiarch LogicReg_1.4.11.tar.gz >> * installing to library >> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’ >> * installing *source* package ‘LogicReg’ ... >> ** package ‘LogicReg’ successfully unpacked and MD5 sums checked >> ** Creating default NAMESPACE file >> ** libs >> *** arch - i386 >> gfortran -fPIC -g -O2 -c My_own_scoring.f -o My_own_scoring.o >> gfortran -fPIC -g -O2 -c external.f -o external.o >> gfortran -fPIC -g -O2 -c slogic.f -o slogic.o >> gcc-4.2 -arch i386 -std=gnu99 >> -I/Library/Frameworks/R.framework/Resources/include >> -I/Library/Frameworks/R.framework/Resources/include/i386 >> -I/usr/local/include -fPIC -g -O2 -c swrite.c -o swrite.o >> gcc-4.2 -arch i386 -std=gnu99 -dynamiclib >> -Wl,-headerpad_max_install_names -single_module -multiply_defined >> suppress -L/usr/local/lib >> -L/usr/local/gfortran/lib/gcc/i686-apple-darwin9/4.6.2 -o LogicReg.so >> My_own_scoring.o external.o slogic.o swrite.o -lgfortran >> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework >> -Wl,CoreFoundation >> installing to >> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386 >> ** R >> ** data >> ** inst >> ** preparing package for lazy loading >> ** help >> *** installing help indices >> ** building package indices ... >> ** testing if installed package can be loaded >> Error in dyn.load(file, DLLpath = DLLpath, ...) : >> unable to load shared object >> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so': >> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so, >> 6): no suitable image found. Did find: >> >> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so: >> out of address space >> Error: loading failed >> Execution halted >> ERROR: loading failed >> * removing >> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg’ >> $ >> >> Any ideas? >> >> Thanks >> >> _______________________________________________ >> R-SIG-Mac mailing list >> R-SIG-Mac@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac