What precise OS and which architecture is this (see the posting guide)?
AFAIK LogicReg will install on x86_64 on a Mac (nowadays the default for
most people) but not the 32-bit architectures.
It predefines some very large arrays: try reducing LGCn1MAX (twice) in
slogic.f . It then works for me (I tried 10000).
And if this works for you, please report to the package maintainer.
On 16/01/2012 14:31, BEES INC wrote:
I should add, it is the same version of gfortran that R is expecting,
just installed in a different location
On Tue, Jan 17, 2012 at 1:25 AM, BEES INC<bees....@gmail.com> wrote:
I do not believe gfortran comes with OS X, so I installed the latest
version. R was picking up a version that had been installed with
octave, which is why I needed to make some changes as I did not want
to link R libs with something packaged with octave (because if i
update or remove octave all my R libs will break).
I don't think that is a material part of the issue, and doing some
digging I see it is not just my machine:
http://cran.r-project.org/web/checks/check_results_LogicReg.html
http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/LogicReg-00install.html
Which shows the same error. Can you build the package OK?
Thanks
On Tue, Jan 17, 2012 at 1:16 AM, Kasper Daniel Hansen
<kasperdanielhan...@gmail.com> wrote:
On Mon, Jan 16, 2012 at 2:57 AM, BEES INC<bees....@gmail.com> wrote:
Hey there
I am having a bit of trouble getting this working, I had to do a bit
of fiddling with makefiles to get it to find the right gfortran, but
it builds& links without error, however the install gives the
following error:
You have used some special (?) gfortran at compile time (based on the
above, but I am not sure). This may not work with R that has been
compiled with another gfortran and it might also not work at run time.
We really need more information about exactly what you have done.
Kasper
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so':
dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so,
6): no suitable image found. Did find:
/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so:
out of address space
Full install is as follows:
$ R CMD INSTALL --no-multiarch LogicReg_1.4.11.tar.gz
* installing to library
‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’
* installing *source* package ‘LogicReg’ ...
** package ‘LogicReg’ successfully unpacked and MD5 sums checked
** Creating default NAMESPACE file
** libs
*** arch - i386
gfortran -fPIC -g -O2 -c My_own_scoring.f -o My_own_scoring.o
gfortran -fPIC -g -O2 -c external.f -o external.o
gfortran -fPIC -g -O2 -c slogic.f -o slogic.o
gcc-4.2 -arch i386 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/i386
-I/usr/local/include -fPIC -g -O2 -c swrite.c -o swrite.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib
-Wl,-headerpad_max_install_names -single_module -multiply_defined
suppress -L/usr/local/lib
-L/usr/local/gfortran/lib/gcc/i686-apple-darwin9/4.6.2 -o LogicReg.so
My_own_scoring.o external.o slogic.o swrite.o -lgfortran
-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
installing to
/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so':
dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so,
6): no suitable image found. Did find:
/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so:
out of address space
Error: loading failed
Execution halted
ERROR: loading failed
* removing
‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg’
$
Any ideas?
Thanks
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
--
Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
