Ok, I was wondering if you were picking up the same gfortran at run and compile time. I see the error on the cran building machine, so it is probably an issue at the package level.
I suggest emailing the two authors about it. I know for sure Ingo is using a Mac as a laptop, so perhaps he has something insightful to say about this. Kasper On Mon, Jan 16, 2012 at 9:31 AM, BEES INC <bees....@gmail.com> wrote: > I should add, it is the same version of gfortran that R is expecting, > just installed in a different location > > On Tue, Jan 17, 2012 at 1:25 AM, BEES INC <bees....@gmail.com> wrote: >> I do not believe gfortran comes with OS X, so I installed the latest >> version. R was picking up a version that had been installed with >> octave, which is why I needed to make some changes as I did not want >> to link R libs with something packaged with octave (because if i >> update or remove octave all my R libs will break). >> >> I don't think that is a material part of the issue, and doing some >> digging I see it is not just my machine: >> >> http://cran.r-project.org/web/checks/check_results_LogicReg.html >> http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/LogicReg-00install.html >> >> Which shows the same error. Can you build the package OK? >> >> Thanks >> >> On Tue, Jan 17, 2012 at 1:16 AM, Kasper Daniel Hansen >> <kasperdanielhan...@gmail.com> wrote: >>> On Mon, Jan 16, 2012 at 2:57 AM, BEES INC <bees....@gmail.com> wrote: >>>> Hey there >>>> >>>> I am having a bit of trouble getting this working, I had to do a bit >>>> of fiddling with makefiles to get it to find the right gfortran, but >>>> it builds & links without error, however the install gives the >>>> following error: >>> >>> You have used some special (?) gfortran at compile time (based on the >>> above, but I am not sure). This may not work with R that has been >>> compiled with another gfortran and it might also not work at run time. >>> >>> We really need more information about exactly what you have done. >>> >>> Kasper >>> >>> >>>> >>>> Error in dyn.load(file, DLLpath = DLLpath, ...) : >>>> unable to load shared object >>>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so': >>>> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so, >>>> 6): no suitable image found. Did find: >>>> >>>> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so: >>>> out of address space >>>> >>>> Full install is as follows: >>>> >>>> $ R CMD INSTALL --no-multiarch LogicReg_1.4.11.tar.gz >>>> * installing to library >>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’ >>>> * installing *source* package ‘LogicReg’ ... >>>> ** package ‘LogicReg’ successfully unpacked and MD5 sums checked >>>> ** Creating default NAMESPACE file >>>> ** libs >>>> *** arch - i386 >>>> gfortran -fPIC -g -O2 -c My_own_scoring.f -o My_own_scoring.o >>>> gfortran -fPIC -g -O2 -c external.f -o external.o >>>> gfortran -fPIC -g -O2 -c slogic.f -o slogic.o >>>> gcc-4.2 -arch i386 -std=gnu99 >>>> -I/Library/Frameworks/R.framework/Resources/include >>>> -I/Library/Frameworks/R.framework/Resources/include/i386 >>>> -I/usr/local/include -fPIC -g -O2 -c swrite.c -o swrite.o >>>> gcc-4.2 -arch i386 -std=gnu99 -dynamiclib >>>> -Wl,-headerpad_max_install_names -single_module -multiply_defined >>>> suppress -L/usr/local/lib >>>> -L/usr/local/gfortran/lib/gcc/i686-apple-darwin9/4.6.2 -o LogicReg.so >>>> My_own_scoring.o external.o slogic.o swrite.o -lgfortran >>>> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework >>>> -Wl,CoreFoundation >>>> installing to >>>> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386 >>>> ** R >>>> ** data >>>> ** inst >>>> ** preparing package for lazy loading >>>> ** help >>>> *** installing help indices >>>> ** building package indices ... >>>> ** testing if installed package can be loaded >>>> Error in dyn.load(file, DLLpath = DLLpath, ...) : >>>> unable to load shared object >>>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so': >>>> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so, >>>> 6): no suitable image found. Did find: >>>> >>>> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so: >>>> out of address space >>>> Error: loading failed >>>> Execution halted >>>> ERROR: loading failed >>>> * removing >>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg’ >>>> $ >>>> >>>> Any ideas? >>>> >>>> Thanks >>>> >>>> _______________________________________________ >>>> R-SIG-Mac mailing list >>>> R-SIG-Mac@r-project.org >>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
