Hello all, I wish to transform branch lengths on a tree according to ages of terminal taxa and internal node ages; to this end I have tried to implement the script written by Gene Hunt mentioned in a recent post to this list (http://www.mail-archive.com/r-sig-phylo@r-project.org/msg01005.html; script available at https://gist.github.com/938313).
However, when attempting to run the command scalePhylo(tr, tip.ages, node.mins), it crunches away for hours on my computer (a 2010 MacBook Pro Core i7, which is quite fast). Clearly there's something wrong. I'm afraid I don't know enough about R to debug a script. I thought I'd send this to the list in case someone other than Gene Hunt or Scott Chamberlain has had a go at using this script. Thanks in advance, Roger _______________________________________________ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
