Hi Roger, Can you provide a reproducible example (perhaps a subset of your tree and their tip and node ages if the tree is very large)? I don't know what the problem could be without the data, but perhaps Gene knows?
Scott On Wednesday, July 13, 2011 at 10:57 PM, Roger Close wrote: > Hello all, > > I wish to transform branch lengths on a tree according to ages of > terminal taxa and internal node ages; to this end I have tried to > implement the script written by Gene Hunt mentioned in a recent post > to this list > (http://www.mail-archive.com/r-sig-phylo@r-project.org/msg01005.html; > script available at https://gist.github.com/938313). > > However, when attempting to run the command scalePhylo(tr, tip.ages, > node.mins), it crunches away for hours on my computer (a 2010 MacBook > Pro Core i7, which is quite fast). Clearly there's something wrong. > I'm afraid I don't know enough about R to debug a script. > > I thought I'd send this to the list in case someone other than Gene > Hunt or Scott Chamberlain has had a go at using this script. > > Thanks in advance, > > Roger [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
