Messages by Date
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2015/10/17
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
krzysztofbartoszek
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2015/10/16
Re: [R-sig-phylo] dist.nodes crashing with big trees
Nick Matzke
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2015/10/16
Re: [R-sig-phylo] dist.nodes crashing with big trees
David Bapst
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2015/10/15
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
Julien Clavel
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2015/10/14
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
sandra goutte
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2015/10/14
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
Julien Clavel
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2015/10/14
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
Julien Clavel
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2015/10/14
Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data
Jarrod Hadfield
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2015/10/14
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
sandra goutte
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2015/10/14
Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data
Diederik Strubbe
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2015/10/13
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
Liam J. Revell
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2015/10/13
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
Julien Clavel
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2015/10/12
[R-sig-phylo] Question on pCCA (phyl.cca)
sandra goutte
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2015/10/10
Re: [R-sig-phylo] adding scale bar to plots produced using cophyloplot
Liam J. Revell
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2015/10/10
Re: [R-sig-phylo] get mean support and sd for 100s of gene trees - also node match counting gene trees vs reference
Liam J. Revell
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2015/10/10
[R-sig-phylo] get mean support and sd for 100s of gene trees - also node match counting gene trees vs reference
Chris Buddenhagen
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2015/10/06
[R-sig-phylo] adding scale bar to plots produced using cophyloplot
Julie Lee-Yaw
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2015/10/04
Re: [R-sig-phylo] output of phangorn::midpoint is not compatible with ape::ladderize?
Emmanuel Paradis
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2015/10/04
Re: [R-sig-phylo] output of phangorn::midpoint is not compatible with ape::ladderize?
Yu, Guangchuang
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2015/10/04
Re: [R-sig-phylo] issue in ape's rphylo (and workaround)
Emmanuel Paradis
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2015/10/04
Re: [R-sig-phylo] issue in ape's rphylo (and workaround)
Klaus Schliep
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2015/10/04
Re: [R-sig-phylo] output of phangorn::midpoint is not compatible with ape::ladderize?
Klaus Schliep
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2015/10/04
[R-sig-phylo] output of phangorn::midpoint is not compatible with ape::ladderize?
Yu, Guangchuang
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2015/10/04
[R-sig-phylo] issue in ape's rphylo (and workaround)
Nick Matzke
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2015/10/04
[R-sig-phylo] plotting a tree from large matrix
Rufaida Al Breiki
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2015/10/03
[R-sig-phylo] Zero eigenvalues in corHMM
Teofil Nakov
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2015/10/03
Re: [R-sig-phylo] Distance between two species from a
Liam J. Revell
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2015/10/03
Re: [R-sig-phylo] Distance between two species from a
Jonathan Greenberg
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2015/10/02
Re: [R-sig-phylo] Distance between two species from a
Joseph W. Brown
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2015/10/02
Re: [R-sig-phylo] Distance between two species from a
Liam Revell
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2015/10/02
Re: [R-sig-phylo] Distance between two species from a
Liam Revell
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2015/10/02
[R-sig-phylo] Distance between two species from a
Jonathan Greenberg
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2015/09/28
[R-sig-phylo] Hillis & Huelsenbeck 1992 g1 test?
Simon Greenhill
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2015/09/28
[R-sig-phylo] Important update to geomorph
Adams, Dean [EEOBS]
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2015/09/27
[R-sig-phylo] next release of ape
Emmanuel Paradis
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2015/09/23
Re: [R-sig-phylo] using chronos() from the ape package for large bacterial phylogeny
Brian O'Meara
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2015/09/23
Re: [R-sig-phylo] using chronos() from the ape package for large bacterial phylogeny
Emmanuel Paradis
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2015/09/23
[R-sig-phylo] New package: Linarius
Gilles Benjamin Leduc
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2015/09/22
Re: [R-sig-phylo] using chronos() from the ape package for large bacterial phylogeny
Franz Krah
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2015/09/21
[R-sig-phylo] different p-values for K using phylosignal vs. phylosig
Nicole Rafferty
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2015/09/21
[R-sig-phylo] using chronos() from the ape package for large bacterial phylogeny
Fabian Roger
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2015/09/16
[R-sig-phylo] new phylogenetic comparative method for shape data
John Denton
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2015/09/14
Re: [R-sig-phylo] Dollo character using ace/make.simmap
David Bapst
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2015/09/14
Re: [R-sig-phylo] Dollo character using ace/make.simmap
Graeme Lloyd
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2015/09/14
Re: [R-sig-phylo] Dollo character using ace/make.simmap
Liam J. Revell
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2015/09/14
Re: [R-sig-phylo] Dollo character using ace/make.simmap
Brian O'Meara
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2015/09/14
Re: [R-sig-phylo] Dollo character using ace/make.simmap
Matt Pennell
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2015/09/14
Re: [R-sig-phylo] Dollo character using ace/make.simmap
Nicholas Crouch
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2015/09/14
[R-sig-phylo] Dollo character using ace/make.simmap
Graeme Lloyd
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2015/09/13
Re: [R-sig-phylo] ape package gives 'Error in FI[i]:LA[i] : NA/NaN argument'
Emmanuel Paradis
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2015/09/12
Re: [R-sig-phylo] ape package gives 'Error in FI[i]:LA[i] : NA/NaN argument'
Uwe Menzel
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2015/09/01
Re: [R-sig-phylo] phylo.ANOVA.intra
Julien Clavel
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2015/09/01
[R-sig-phylo] phylo.ANOVA.intra
Bruno Frédérich
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2015/08/31
Re: [R-sig-phylo] Plotting rooted tree with bootstrap values (ape/phangorn)
Emmanuel Paradis
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2015/08/31
Re: [R-sig-phylo] Plotting rooted tree with bootstrap values (ape/phangorn)
Klaus Schliep
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2015/08/31
[R-sig-phylo] Plotting rooted tree with bootstrap values (ape/phangorn)
Kamila Naxerova
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2015/08/28
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Felipe Rossetto
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2015/08/28
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Felipe Rossetto
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2015/08/26
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Upham, Nathan
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2015/08/26
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Christie Ziegler
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2015/08/26
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Felipe Rossetto
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2015/08/26
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Vojtěch Zeisek
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2015/08/26
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Felipe Rossetto
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2015/08/26
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Vojtěch Zeisek
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2015/08/26
[R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Felipe Rossetto
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2015/08/25
Re: [R-sig-phylo] Cannot plot above 500 superimposed trees with densiTree (Phangorn)
Klaus Schliep
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2015/08/24
Re: [R-sig-phylo] R Sig Phylo Question Large Phylogenies
Karen Gordon
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2015/08/24
Re: [R-sig-phylo] R Sig Phylo Question Large Phylogenies
Christie Ziegler
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2015/08/24
Re: [R-sig-phylo] R Sig Phylo Question Large Phylogenies
Liam J. Revell
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2015/08/24
[R-sig-phylo] R Sig Phylo Question Large Phylogenies
Karen Gordon
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2015/08/22
[R-sig-phylo] Cannot plot above 500 superimposed trees with densiTree (Phangorn)
Marina Strelin
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2015/08/21
Re: [R-sig-phylo] Difficulties with Rooting
Rodrigo Aluizio
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2015/08/21
Re: [R-sig-phylo] Difficulties with Rooting
Liam J. Revell
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2015/08/21
[R-sig-phylo] Difficulties with Rooting
Rodrigo Aluizio
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2015/08/17
Re: [R-sig-phylo] Bug in ape: dropping tips from a ladderized tree (still) randomly shuffles the node labels
David Bapst
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2015/08/09
[R-sig-phylo] root edge issue in picante::evol.distinct()
Giulio V. Dalla Riva
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2015/08/08
Re: [R-sig-phylo] PGLS multiple regression with dummy variables and interaction terms
Theodore Garland Jr
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2015/08/08
Re: [R-sig-phylo] PGLS multiple regression with dummy variables and interaction terms
Chris Organ
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2015/08/08
[R-sig-phylo] PGLS multiple regression with dummy variables and interaction terms
Patrick Gemmell
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2015/08/03
Re: [R-sig-phylo] simulating rate shifts
eric
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2015/08/01
Re: [R-sig-phylo] simulating rate shifts
Liam J. Revell
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2015/08/01
Re: [R-sig-phylo] simulating rate shifts
Theodore Garland Jr
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2015/08/01
Re: [R-sig-phylo] simulating rate shifts
Eric
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2015/07/31
Re: [R-sig-phylo] simulating rate shifts
Liam J. Revell
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2015/07/31
Re: [R-sig-phylo] simulating rate shifts
Emmanuel Paradis
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2015/07/31
Re: [R-sig-phylo] Plotting error edgelabels in phylogeny type="fan"
Emmanuel Paradis
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2015/07/30
Re: [R-sig-phylo] Plotting error edgelabels in phylogeny type="fan"
Julia Dupin
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2015/07/30
Re: [R-sig-phylo] Plotting error edgelabels in phylogeny type="fan"
Liam J. Revell
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2015/07/30
Re: [R-sig-phylo] Plotting error edgelabels in phylogeny type="fan"
Klaus Schliep
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2015/07/30
[R-sig-phylo] Plotting error edgelabels in phylogeny type="fan"
Julia Dupin
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2015/07/30
[R-sig-phylo] simulating rate shifts
Eric Lewitus
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2015/07/29
[R-sig-phylo] MEDUSA error question
Benjamin Blanchard
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2015/07/28
Re: [R-sig-phylo] Bug in ape: dropping tips from a ladderized tree (still) randomly shuffles the node labels
Emmanuel Paradis
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2015/07/28
[R-sig-phylo] Obtaining a scaled tree out of GEIGER rjmcmc.bm()
A Chira
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2015/07/25
Re: [R-sig-phylo] Bug in ape: dropping tips from a ladderized tree (still) randomly shuffles the node labels
Emmanuel Paradis
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2015/07/25
Re: [R-sig-phylo] Bug in ape: dropping tips from a ladderized tree (still) randomly shuffles the node labels
David Bapst
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2015/07/25
Re: [R-sig-phylo] ANOVA type II with gls()
Emmanuel Paradis
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2015/07/25
Re: [R-sig-phylo] Bug in ape: dropping tips from a ladderized tree (still) randomly shuffles the node labels
Emmanuel Paradis
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2015/07/22
Re: [R-sig-phylo] Weird abline
Sergio Ferreira Cardoso
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2015/07/22
[R-sig-phylo] Weird abline
Sergio Ferreira Cardoso
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2015/07/21
[R-sig-phylo] ANOVA type II with gls()
Sergio Ferreira Cardoso
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2015/07/20
Re: [R-sig-phylo] R-squared alternative for gls
Sergio Ferreira Cardoso
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2015/07/20
Re: [R-sig-phylo] R-squared alternative for gls
Theodore Garland Jr
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2015/07/20
Re: [R-sig-phylo] Different Lambda estimations
Sergio Ferreira Cardoso
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2015/07/20
[R-sig-phylo] R-squared alternative for gls
Sergio Ferreira Cardoso
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2015/07/18
Re: [R-sig-phylo] Problem with runSurface {surface}
Arley Camargo
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2015/07/18
[R-sig-phylo] Problem with runSurface {surface}
Diego Salazar
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2015/07/17
[R-sig-phylo] Bug in ape: dropping tips from a ladderized tree (still) randomly shuffles the node labels
David Bapst
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2015/07/17
Re: [R-sig-phylo] testing for variation in rates of evolution among traits
Julien Clavel
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2015/07/17
Re: [R-sig-phylo] testing for variation in rates of evolution among traits
Julien Clavel
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2015/07/17
Re: [R-sig-phylo] testing for variation in rates of evolution among traits
Adams, Dean [EEOBS]
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2015/07/17
Re: [R-sig-phylo] testing for variation in rates of evolution among traits
Joe Felsenstein
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2015/07/17
Re: [R-sig-phylo] testing for variation in rates of evolution among traits
f.k...@mailbox.org
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2015/07/17
Re: [R-sig-phylo] Different Lambda estimations
Emmanuel Paradis
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2015/07/17
Re: [R-sig-phylo] testing for variation in rates of evolution among traits
Chad Eliason
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2015/07/17
Re: [R-sig-phylo] testing for variation in rates of evolution among traits
Karla Shikev
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2015/07/17
Re: [R-sig-phylo] testing for variation in rates of evolution among traits
Julien Clavel
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2015/07/16
Re: [R-sig-phylo] testing for variation in rates of evolution among traits
Giulio V. Dalla Riva
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2015/07/16
Re: [R-sig-phylo] testing for variation in rates of evolution among traits
Giulio V. Dalla Riva
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2015/07/16
Re: [R-sig-phylo] testing for variation in rates of evolution among traits
Theodore Garland Jr
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2015/07/16
Re: [R-sig-phylo] testing for variation in rates of evolution among traits
Adams, Dean [EEOBS]
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2015/07/16
Re: [R-sig-phylo] PGLS with non-ultrametric tree
Theodore Garland Jr
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2015/07/16
Re: [R-sig-phylo] PGLS with non-ultrametric tree
David Bapst
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2015/07/16
Re: [R-sig-phylo] PGLS with non-ultrametric tree
Paolo Piras
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2015/07/16
Re: [R-sig-phylo] PGLS with non-ultrametric tree
Solomon Chak
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2015/07/16
[R-sig-phylo] testing for variation in rates of evolution among traits
Karla Shikev
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2015/07/16
Re: [R-sig-phylo] PGLS with non-ultrametric tree
Theodore Garland Jr
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2015/07/16
[R-sig-phylo] Different Lambda estimations
Sergio Ferreira Cardoso
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2015/07/16
[R-sig-phylo] PGLS with non-ultrametric tree
Solomon Chak
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2015/07/15
Re: [R-sig-phylo] boxplots next to phylogeny
Martin Bulla
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2015/07/15
Re: [R-sig-phylo] Prune very large tree
Sergio Ferreira Cardoso
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2015/07/15
Re: [R-sig-phylo] boxplots next to phylogeny
Emmanuel Paradis
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2015/07/15
Re: [R-sig-phylo] Prune very large tree
Klaus Schliep
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2015/07/15
Re: [R-sig-phylo] Prune very large tree
Florian Boucher
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2015/07/15
Re: [R-sig-phylo] Prune very large tree
Matt Pennell
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2015/07/15
[R-sig-phylo] Prune very large tree
Sergio Ferreira Cardoso
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2015/07/15
Re: [R-sig-phylo] boxplots next to phylogeny
Martin Bulla
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2015/07/15
Re: [R-sig-phylo] boxplots next to phylogeny
Martin Bulla
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2015/07/15
Re: [R-sig-phylo] boxplots next to phylogeny
Liam J. Revell
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2015/07/15
Re: [R-sig-phylo] sorry for the wrong link in the previous email Re: boxplots next to phylogeny
Emmanuel Paradis
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2015/07/15
Re: [R-sig-phylo] Build consensus trees
Sergio Ferreira Cardoso
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2015/07/15
Re: [R-sig-phylo] Build consensus trees
Sergio Ferreira Cardoso
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2015/07/15
[R-sig-phylo] sorry for the wrong link in the previous email Re: boxplots next to phylogeny
Martin Bulla
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2015/07/15
Re: [R-sig-phylo] boxplots next to phylogeny
Martin Bulla
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2015/07/15
[R-sig-phylo] Build consensus trees
Sergio Ferreira Cardoso
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2015/07/14
Re: [R-sig-phylo] Different estimate of Bloomberg's k in ape and caper in R
Slater, Graham
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2015/07/14
[R-sig-phylo] Different estimate of Bloomberg's k in ape and caper in R
Solomon Chak
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2015/07/14
Re: [R-sig-phylo] boxplots next to phylogeny
Liam J. Revell
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2015/07/14
[R-sig-phylo] Diversification shift, LTT plot comparison
Adama FAYE
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2015/07/14
[R-sig-phylo] boxplots next to phylogeny
Martin Bulla
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2015/07/12
Re: [R-sig-phylo] Constraining node values in an OUCH analysis (Aaron King)Re: Constraining node values in an OUCH analysis (Krzysztof Bartoszek)
krzysztofbartoszek
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2015/07/11
Re: [R-sig-phylo] simulating a labile trait
Emmanuel Paradis
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2015/07/10
Re: [R-sig-phylo] simulating a labile trait
Liam J. Revell
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2015/07/10
Re: [R-sig-phylo] simulating a labile trait
Theodore Garland Jr
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2015/07/10
[R-sig-phylo] simulating a labile trait
Glenn Seeholzer
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2015/07/10
Re: [R-sig-phylo] Handling polytomies in PGLS
Liam J. Revell
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2015/07/09
[R-sig-phylo] Handling polytomies in PGLS
Brian A. Gill
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2015/07/09
[R-sig-phylo] adegenet 2.0.0 on CRAN!
Jombart, Thibaut
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2015/07/07
Re: [R-sig-phylo] Export Ancestral Mapping From Mesquite into Figtree
Liam J. Revell
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2015/07/07
[R-sig-phylo] Export Ancestral Mapping From Mesquite into Figtree
Jackson, Laura Marie
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2015/07/06
Re: [R-sig-phylo] convergence problem using phyloglm and IG10
ANTHONY R IVES
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2015/07/06
Re: [R-sig-phylo] convergence problem using phyloglm and IG10
Lam Ho
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2015/07/06
Re: [R-sig-phylo] Ancestral Reconstruction with Polymorphic States
Brian O'Meara
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2015/07/06
[R-sig-phylo] Ancestral Reconstruction with Polymorphic States
Jackson, Laura Marie
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2015/07/06
Re: [R-sig-phylo] convergence problem using phyloglm and IG10
Cécile Ané
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2015/07/06
Re: [R-sig-phylo] doubt
Lilian Sayuri Ouchi de Melo
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2015/07/06
[R-sig-phylo] convergence problem using phyloglm and IG10
f.k...@mailbox.org
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2015/07/05
Re: [R-sig-phylo] doubt
David Bapst
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2015/07/04
Re: [R-sig-phylo] doubt
Lilian Sayuri Ouchi de Melo
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2015/07/04
Re: [R-sig-phylo] doubt
Liam J. Revell
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2015/07/04
Re: [R-sig-phylo] corDISC binary coding problems
Franz Krah
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2015/07/03
[R-sig-phylo] doubt
Lilian Sayuri Ouchi de Melo
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2015/07/03
Re: [R-sig-phylo] corDISC binary coding problems
Brian O'Meara
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2015/07/03
Re: [R-sig-phylo] an error running make.simmap
Liam J. Revell
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2015/07/03
[R-sig-phylo] an error running make.simmap
Rubén Torices Blanco
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2015/07/02
[R-sig-phylo] Get SNP information
lavanya c
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2015/06/26
[R-sig-phylo] corDISC binary coding problems
f.k...@mailbox.org
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2015/06/24
Re: [R-sig-phylo] phyres function R package caper
Sergio Ferreira Cardoso
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2015/06/24
Re: [R-sig-phylo] phyres function R package caper
Liam J. Revell
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2015/06/24
Re: [R-sig-phylo] phyres function R package caper
Theodore Garland Jr
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2015/06/24
Re: [R-sig-phylo] phyres function R package caper
Theodore Garland Jr
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2015/06/24
[R-sig-phylo] phyres function R package caper
Sergio Ferreira Cardoso
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2015/06/22
[R-sig-phylo] NNI/SPR Distance
Karla Shikev
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2015/06/22
Re: [R-sig-phylo] Margin Artifact in plot.phylo with Very Long Tip Labels, despite show.tip.label=FALSE
Emmanuel Paradis
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2015/06/19
Re: [R-sig-phylo] Non Parametric PGLS
Étienne Léveillé-Bourret
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2015/06/19
Re: [R-sig-phylo] Non Parametric PGLS
Julien Clavel
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2015/06/19
Re: [R-sig-phylo] Non Parametric PGLS
Santiago Claramunt
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2015/06/19
Re: [R-sig-phylo] Non Parametric PGLS
Julien Clavel
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2015/06/19
Re: [R-sig-phylo] Non Parametric PGLS
Manabu Sakamoto
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2015/06/19
Re: [R-sig-phylo] Non Parametric PGLS
Julien Clavel
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2015/06/19
Re: [R-sig-phylo] Non Parametric PGLS
Santiago Claramunt
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2015/06/18
Re: [R-sig-phylo] Non Parametric PGLS
Julien Clavel
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2015/06/18
Re: [R-sig-phylo] Margin Artifact in plot.phylo with Very Long Tip Labels, despite show.tip.label=FALSE
Liam J. Revell
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2015/06/18
Re: [R-sig-phylo] Non Parametric PGLS
Santiago Claramunt
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2015/06/18
Re: [R-sig-phylo] collapse.singles() can be confused by node numbering (Was: Bug in reorder.phylo() (related to cleaning phylo objects))
Emmanuel Paradis
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2015/06/18
[R-sig-phylo] Margin Artifact in plot.phylo with Very Long Tip Labels, despite show.tip.label=FALSE
David Bapst
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2015/06/18
Re: [R-sig-phylo] Non Parametric PGLS
Sergio Ferreira Cardoso
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2015/06/18
Re: [R-sig-phylo] Missing States in ML Reconstruction of Discrete Ancestral States (phytools, ape)
Emmanuel Paradis
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2015/06/18
Re: [R-sig-phylo] Looking for beta users for rotl (an R package to access the Open Tree of Life)
François Michonneau
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2015/06/18
Re: [R-sig-phylo] Non Parametric PGLS
Liam J. Revell