Dear Evgueni,

On Tue, Dec 1, 2009 at 10:21 AM, Evgueni Kolossov <ekolos...@gmail.com> wrote:
>
> I have enclosed 2 files - images for structure and fragment. When using
> unsigned int SubstructMatch() I am getting value = 17!!! Looking like
> function is not taking in account atom types and flag uniquify is not
> working at all - or may be I am missing something? Can you please comment on
> this behaviour?

I guess I don't really see anything particularly unusual. Have you
tried looking at the values you get for the matches? Is there a
particular result you see that doesn't make sense?

-greg

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