Hi Adrian, thanks for the quick answer. Yes, the headers are installed and the cartridge also compiles fine and the rdkit-sql libraries are installed into the correct corresponding directories ("make && sudo make install" run without errors) Kind regards, Axel
Gesendet: Montag, 21. Oktober 2013 um 17:07 Uhr Von: "Adrian Schreyer" <adrian.schre...@gmail.com> An: chemis...@gmx.de Cc: "RDKit Discuss" <rdkit-discuss@lists.sourceforge.net> Betreff: Re: [Rdkit-discuss] (no subject) Hi, Did you install the PostgreSQL development (header) files? Should be a package called postgresql-server-dev or similar. Adrian On Mon, Oct 21, 2013 at 3:58 PM, <chemis...@gmx.de> wrote: Hi, I am a medicinal chemist and am using RDKit and the Postgresql cartridge with much success in a small startup project as the backbone for the chemical / biological database and for cheminformatics (Lipinski and such, substructure and similarity searches, ...). I have just upgraded from RDKit_2013_03_2.tgz to RDKit_2013_06_1.tgz on Arch Linux (but using bison 2.7) and as far as I can tell, the upgrade was ok, rdkit is working fine in IPython. But in postgresql, I now get this error: psql (9.2.4) db=# select cpd_no, mol_to_smiles(mol) as smiles, lab_code from chem_cpd, chem_batch where cpd_pk = 150 and cpd_pk = cpd_fk; ERROR: could not load library "/usr/lib/postgresql/rdkit.so": /usr/lib/postgresql/rdkit.so: undefined symbol: palloc db=# I have rebuilt the cartridge of the new version, of course. Do you have any ideas what might cause this error ? Many thanks in advance, Axel ------------------------------------------------------------------------------ October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60135031&iu=/4140/ostg.clktrk[http://pubads.g.doubleclick.net/gampad/clk?id=60135031&iu=/4140/ostg.clktrk] _______________________________________________ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net[Rdkit-discuss@lists.sourceforge.net] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss ------------------------------------------------------------------------------ October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60135031&iu=/4140/ostg.clktrk _______________________________________________ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss