Hi, Sorry for the long delay. I couldn't resolve the problem but Matt McCormick did it for us: https://discourse.itk.org/t/link-issue-with-dynamic-libraries/1434/2 That fixed the issue for me. Best regards, Simon
On Wed, Oct 31, 2018 at 4:55 PM Simon Rit <[email protected]> wrote: > Hi, > I can reproduce the problem and I haven't found a solution yet. I'll let > you know when I have a fix... > Simon > > On Sat, Oct 27, 2018 at 6:06 AM Julia Semyakishkina < > [email protected]> wrote: > >> Hi. Yes, i am. >> Could you just run this simple script in empty directory: >> #!/bin/sh >> wget >> https://sourceforge.net/projects/itk/files/itk/4.13/InsightToolkit-4.13.1.tar.gz >> tar -xvzf InsightToolkit-4.13.1.tar.gz >> mkdir InsightToolkit-4.13.1/build && cd InsightToolkit-4.13.1/build >> cmake -D CMAKE_BUILD_TYPE=Release -D BUILD_SHARED_LIBS:BOOL=ON .. && make >> -j`grep -c processor /proc/cpuinfo` >> ITK_DIR=`pwd` >> cd ../../ >> git clone https://github.com/SimonRit/RTK >> mkdir RTK/build && cd RTK/build >> cmake -D CMAKE_BUILD_TYPE=Release -D BUILD_SHARED_LIBS:BOOL=ON -D >> BUILD_TESTING:BOOL=OFF -D ITK_DIR:PATH=$ITK_DIR .. && make >> >> Don't you have the same linker errors i wrote in the previous message ? >> >> some info about my system >> Ubuntu 17.04 >> Linux mnolro6001 4.10.0-42-generic #46-Ubuntu SMP Mon Dec 4 14:38:01 UTC >> 2017 x86_64 x86_64 x86_64 GNU/Linux >> gcc version 6.3.0 20170406 (Ubuntu 6.3.0-12ubuntu2) >> cmake version 3.13.0-rc1 >> >> >> >> >> On Fri, Oct 26, 2018 at 8:05 PM Simon Rit <[email protected]> >> wrote: >> >>> Hi, >>> Are you sure it's shared with the same compilation mode (Debug or >>> Release) ? >>> Simon >>> >>> On Fri, Oct 26, 2018 at 5:18 AM Julia Semyakishkina < >>> [email protected]> wrote: >>> >>>> Ok, it works in case ITK Static -> RTK Static. When i try to build ITK >>>> Shared -> RTK Shared, i have got: >>>> [ 19%] Linking CXX executable ../../bin/rtkamsterdamshroud >>>> CMakeFiles/rtkamsterdamshroud.dir/rtkamsterdamshroud.cxx.o: In function >>>> `rtk::ThreeDCircularProjectionGeometryXMLFileReader::New()': >>>> rtkamsterdamshroud.cxx:(.text._ZN3rtk45ThreeDCircularProjectionGeometryXMLFileReader3NewEv[_ZN3rtk45ThreeDCircularProjectionGeometryXMLFileReader3NewEv]+0xe): >>>> undefined reference to `typeinfo for >>>> rtk::ThreeDCircularProjectionGeometryXMLFileReader' >>>> rtkamsterdamshroud.cxx:(.text._ZN3rtk45ThreeDCircularProjectionGeometryXMLFileReader3NewEv[_ZN3rtk45ThreeDCircularProjectionGeometryXMLFileReader3NewEv]+0x41): >>>> undefined reference to `typeinfo for >>>> rtk::ThreeDCircularProjectionGeometryXMLFileReader' >>>> rtkamsterdamshroud.cxx:(.text._ZN3rtk45ThreeDCircularProjectionGeometryXMLFileReader3NewEv[_ZN3rtk45ThreeDCircularProjectionGeometryXMLFileReader3NewEv]+0xc9): >>>> undefined reference to >>>> `rtk::ThreeDCircularProjectionGeometryXMLFileReader::ThreeDCircularProjectionGeometryXMLFileReader()' >>>> CMakeFiles/rtkamsterdamshroud.dir/rtkamsterdamshroud.cxx.o: In function >>>> `std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, >>>> std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, >>>> std::char_traits<char>, std::allocator<char> > > > const >>>> rtk::GetProjectionsFileNamesFromGgo<args_info_rtkamsterdamshroud>(args_info_rtkamsterdamshroud >>>> const&)': >>>> rtkamsterdamshroud.cxx:(.text._ZN3rtk30GetProjectionsFileNamesFromGgoI28args_info_rtkamsterdamshroudEEKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EERKT_[_ZN3rtk30GetProjectionsFileNamesFromGgoI28args_info_rtkamsterdamshroudEEKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EERKT_]+0x3c1): >>>> undefined reference to `rtk::RegisterIOFactories()' >>>> CMakeFiles/rtkamsterdamshroud.dir/rtkamsterdamshroud.cxx.o: In function >>>> `rtk::ProjectionsReader<itk::Image<double, 3u> >>>> >::GenerateOutputInformation()': >>>> rtkamsterdamshroud.cxx:(.text._ZN3rtk17ProjectionsReaderIN3itk5ImageIdLj3EEEE25GenerateOutputInformationEv[_ZN3rtk17ProjectionsReaderIN3itk5ImageIdLj3EEEE25GenerateOutputInformationEv]+0x8e1): >>>> undefined reference to `rtk::RegisterIOFactories()' >>>> collect2: error: ld returned 1 exit status >>>> applications/rtkamsterdamshroud/CMakeFiles/rtkamsterdamshroud.dir/build.make:141: >>>> recipe for target 'bin/rtkamsterdamshroud' failed >>>> make[2]: *** [bin/rtkamsterdamshroud] Error 1 >>>> CMakeFiles/Makefile2:512: recipe for target >>>> 'applications/rtkamsterdamshroud/CMakeFiles/rtkamsterdamshroud.dir/all' >>>> failed >>>> make[1]: *** >>>> [applications/rtkamsterdamshroud/CMakeFiles/rtkamsterdamshroud.dir/all] >>>> Error 2 >>>> Makefile:129: recipe for target 'all' failed >>>> make: *** [all] Error 2 >>>> >>>> On Fri, Oct 26, 2018 at 2:59 AM Simon Rit < >>>> [email protected]> wrote: >>>> >>>>> Hi, >>>>> It seems that you are trying to compile against an installed ITK_DIR. >>>>> This is no longer possible, see this thread: >>>>> https://github.com/SimonRit/RTK/issues/207 >>>>> Can you try to compile against your build directory (set ITK_DIR to >>>>> the build directory)? >>>>> Thanks, >>>>> Simon >>>>> >>>>> On Thu, Oct 25, 2018 at 5:16 PM Julia Semyakishkina < >>>>> [email protected]> wrote: >>>>> >>>>>> Hello. >>>>>> I can't build RTK in Linux. I've done all default steps described in >>>>>> wiki, but on configure i've got: >>>>>> CMake Error at utilities/lp_solve/CMakeLists.txt:9 (include): >>>>>> include could not find load file: >>>>>> >>>>>> ITKModuleMacros >>>>>> >>>>>> >>>>>> Hm.. it tries include module that exists in src ITK dir, not >>>>>> install... >>>>>> I mean >>>>>> "ls /usr/local/lib/cmake/ITK-4.13 | grep ITKModuleMacros" prints >>>>>> nothing >>>>>> "ls /home/user/src/ITK/CMake | grep ITKModuleMacros" prints >>>>>> ITKModuleMacros.cmake >>>>>> >>>>>> OK, i have just tried to add >>>>>> CMAKE_MODULE_PATH=/home/user/src/ITK/CMake and got next error: >>>>>> >>>>>> CMake Error at CMakeLists.txt:250 (message): >>>>>> Modules can only be built against an ITK build tree; they cannot be >>>>>> built >>>>>> against an ITK install tree. >>>>>> >>>>>> Let's look at the code: >>>>>> >>>>>> if(NOT ITK_SOURCE_DIR) >>>>>> if(NOT EXISTS ${ITK_CMAKE_DIR}/ITKModuleMacros.cmake) >>>>>> message(FATAL_ERROR "Modules can only be built against an ITK >>>>>> build tree; they cannot be built against an ITK install tree.") >>>>>> endif() >>>>>> list(APPEND CMAKE_MODULE_PATH ${ITK_CMAKE_DIR}) >>>>>> include(ITKModuleExternal) >>>>>> else() >>>>>> itk_module_impl() >>>>>> endif() >>>>>> >>>>>> Yea, ITK_SOURCE_DIR is not set in my case, but why there is must be >>>>>> ITKModuleMacros.cmake at my ITK_CMAKE_DIR dir that points to ITK >>>>>> installation dir ? >>>>>> >>>>>> If i set ITK_CMAKE_DIR to /home/user/src/ITK/CMake where >>>>>> ITKModuleMacros is, it resets back to ITK installation directory at >>>>>> # -------------------------------------------------------- >>>>>> # Find ITK (required) >>>>>> if(NOT ITK_SOURCE_DIR) >>>>>> find_package(ITK 4.12.0 REQUIRED) >>>>>> endif() >>>>>> >>>>>> >>>>>> So, the only way i see is to build inside ITK, but i am not familiar >>>>>> with this. Could anyone help me how to build RTK inside ITK. >>>>>> _______________________________________________ >>>>>> Rtk-users mailing list >>>>>> [email protected] >>>>>> https://public.kitware.com/mailman/listinfo/rtk-users >>>>>> >>>>> _______________________________________________ >>>> Rtk-users mailing list >>>> [email protected] >>>> https://public.kitware.com/mailman/listinfo/rtk-users >>>> >>> _______________________________________________ >> Rtk-users mailing list >> [email protected] >> https://public.kitware.com/mailman/listinfo/rtk-users >> >
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