On Jan 4, 2008 12:58 PM, mabshoff <[EMAIL PROTECTED]> wrote: > > > > > On Jan 4, 9:52 pm, Johannct <[EMAIL PROTECTED]> wrote: > > fresh rebuild from a vanilla source, LD_LIBRARY_PATH, PYTHONPATH > > etc... unsetenved, and using make and *not* make -j2 and using > > SAGE_FORTRAN set to gfortran, I still stumble : > > > > make[3]: `libcblas.so' is up to date. > > make[3]: Leaving directory `/data1/sources/sage-2.9.1.1/spkg/build/ > > atlas-3.8.p6/ATLAS-build/lib' > > make[2]: Leaving directory `/data1/sources/sage-2.9.1.1/spkg/build/ > > atlas-3.8.p6/ATLAS-build/lib' > > make[2]: Entering directory `/data1/sources/sage-2.9.1.1/spkg/build/ > > atlas-3.8.p6/ATLAS-build' > > mkdir -p /data1/sources/sage-2.9.1.1/local/include/atlas > > chmod 0755 /data1/sources/sage-2.9.1.1/local/include/atlas > > make -f Make.top install_inc INSTdir=/data1/sources/sage-2.9.1.1/local/ > > include > > make[3]: Entering directory `/data1/sources/sage-2.9.1.1/spkg/build/ > > atlas-3.8.p6/ATLAS-build' > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/../ > > src/ATLAS//include/cblas.h /data1/sources/sage-2.9.1.1/local/include/. > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/../ > > src/ATLAS//include/clapack.h /data1/sources/sage-2.9.1.1/local/ > > include/. > > chmod 0644 /data1/sources/sage-2.9.1.1/local/include/cblas.h /data1/ > > sources/sage-2.9.1.1/local/include/clapack.h > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/ > > include/* /data1/sources/sage-2.9.1.1/local/include/atlas/. > > chmod 0644 /data1/sources/sage-2.9.1.1/local/include/atlas/* > > make[3]: Leaving directory `/data1/sources/sage-2.9.1.1/spkg/build/ > > atlas-3.8.p6/ATLAS-build' > > make -f Make.top install_lib INSTdir=/data1/sources/sage-2.9.1.1/local/ > > lib > > make[3]: Entering directory `/data1/sources/sage-2.9.1.1/spkg/build/ > > atlas-3.8.p6/ATLAS-build' > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/ > > libatlas.a /data1/sources/sage-2.9.1.1/local/lib/. > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/ > > libcblas.a /data1/sources/sage-2.9.1.1/local/lib/. > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/ > > liblapack.a /data1/sources/sage-2.9.1.1/local/lib/. > > chmod 0644 /data1/sources/sage-2.9.1.1/local/lib/libatlas.a /data1/ > > sources/sage-2.9.1.1/local/lib/liblapack.a \ > > /data1/sources/sage-2.9.1.1/local/lib/libcblas.a > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/ > > libf77blas.a /data1/sources/sage-2.9.1.1/local/lib/. > > chmod 0644 /data1/sources/sage-2.9.1.1/local/lib/libf77blas.a > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/ > > libptcblas.a /data1/sources/sage-2.9.1.1/local/lib/. > > cp: cannot stat `/data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ > > ATLAS-build/lib/libptcblas.a': No such file or directory > > make[3]: [install_lib] Error 1 (ignored) > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/ > > libptf77blas.a /data1/sources/sage-2.9.1.1/local/lib/. > > cp: cannot stat `/data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ > > ATLAS-build/lib/libptf77blas.a': No such file or directory > > make[3]: [install_lib] Error 1 (ignored) > > chmod 0644 /data1/sources/sage-2.9.1.1/local/lib/libptcblas.a /data1/ > > sources/sage-2.9.1.1/local/lib/libptf77blas.a > > chmod: cannot access `/data1/sources/sage-2.9.1.1/local/lib/ > > libptcblas.a': No such file or directory > > chmod: cannot access `/data1/sources/sage-2.9.1.1/local/lib/ > > libptf77blas.a': No such file or directory > > make[3]: [install_lib] Error 1 (ignored) > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/ > > libatlas.so /data1/sources/sage-2.9.1.1/local/lib/. > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/ > > libcblas.so /data1/sources/sage-2.9.1.1/local/lib/. > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/ > > libf77blas.so /data1/sources/sage-2.9.1.1/local/lib/. > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/ > > liblapack.so /data1/sources/sage-2.9.1.1/local/lib/. > > chmod 0644 /data1/sources/sage-2.9.1.1/local/lib/libatlas.so /data1/ > > sources/sage-2.9.1.1/local/lib/liblapack.so \ > > /data1/sources/sage-2.9.1.1/local/lib/ > > libcblas.so /data1/sources/sage-2.9.1.1/local/lib/libcblas.so > > make[3]: Leaving directory `/data1/sources/sage-2.9.1.1/spkg/build/ > > atlas-3.8.p6/ATLAS-build' > > make[2]: Leaving directory `/data1/sources/sage-2.9.1.1/spkg/build/ > > atlas-3.8.p6/ATLAS-build' > > ld -L/data1/sources/sage-2.9.1.1/local/lib -shared -soname > > liblapack.so -o liblapack.so --whole-archive liblapack.a --no-whole- > > archive -lc -lm -lgfortran > > ld: cannot find -lgfortran > > ld -L/data1/sources/sage-2.9.1.1/local/lib -shared -soname > > libf77blas.so -o libf77blas.so --whole-archive libf77blas.a --no-whole- > > archive -lc -lm -lgfortran > > ld: cannot find -lgfortran > > Hi, > > that is a known bug that ought to be fixed in 2.9.2 (out in a couple > hours). You can download > > http://sage.math.washington.edu/home/jkantor/spkgs/fortran-20071120.p2.spkg > > and drop it into spkg/standard - then run make again and the problem > should go away. >
I don't think the above spkg actually fixes the problem, as you'll probably find out if you try it. Something that Kate suggested is to symlink: /usr/lib/gcc/i386-redhat-linux/4.1.2/libgfortran.so to $SAGE_ROOT/local/lib/ i.e., cd to SAGE_ROOT/local/lib/ and type ln - s /usr/lib/gcc/i386-redhat-linux/4.1.2/libgfortran.so . Please report back if this does/doesn't work for you. It worked for Kate. We are going to add an environement variable for 2.9.2 so the above symlink can be created automatically during the SAGE build. Thanks! --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://sage.scipy.org/sage/ and http://modular.math.washington.edu/sage/ -~----------~----~----~----~------~----~------~--~---
