Hello, I'm trying to install the latest version of sage, the developer version. I've done this before on my Mac before it got wiped, albeit with a lot of computer scientists' help to get past git hub errors.
I followed the guide on wiki along with a quick guide written by Ben Hutz (attached) and I'm stuck on step 6. I'm on a Max with Mojave 10.14.6, I think I have python 2.7.16 (I don't know how to find the actual python file, and I don't know how to update it to python 3.0). I have way more than 6 gigs of space and 2gigs of ram (the recommended info on the guide). I installed homebrew as the guide said as well, since I'm running a more recent Mac OS. I also installed xcode as the guide suggested. During the build I got an error: "Error building Sage. The following package(s) may have failed to build (not necessarily during this run of 'make all-start'): * package: pynac-0.7.26.sage-2020-04-03.p0 last build time: Oct 2 21:54 log file: /Users/bthompson/Dropbox/Sage_development/logs/pkgs/pynac-0.7.26.sage-2020-04-03.p0.log build directory: /Users/bthompson/Dropbox/Sage_development/local/var/tmp/sage/build/pynac-0.7.26.sage-2020-04-03.p0 ...... make[1]: *** [all-start] Error 1 make: *** [all] Error 2" I've included one of the log files of the two above. I wasn't able to find the other log file. I would love to know if folk have some suggestions on getting past these errors. I am not well versed in computer science language and only know what I do from the sage workshops I've attended. Thank you! Bianca Thompson -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/3757a446-da6b-475a-8cc2-fe9585252828n%40googlegroups.com.
SetupSageAndGIT.pdf
Description: Adobe PDF document
Found local metadata for pynac-0.7.26.sage-2020-04-03.p0 Attempting to download package pynac-0.7.26.sage-2020-04-03.tar.bz2 from mirrors http://mirrors.xmission.com/sage/spkg/upstream/pynac/pynac-0.7.26.sage-2020-04-03.tar.bz2 [......................................................................] pynac-0.7.26.sage-2020-04-03.p0 ==================================================== Setting up build directory for pynac-0.7.26.sage-2020-04-03.p0 Finished extraction Applying patches from ../patches... Applying ../patches/py_ssize_t_clean.patch patching file ginac/function.cpp patching file ginac/numeric.cpp **************************************************** Host system: Darwin ml20fa-bthompson 18.7.0 Darwin Kernel Version 18.7.0: Thu Jun 18 20:50:10 PDT 2020; root:xnu-4903.278.43~1/RELEASE_X86_64 x86_64 **************************************************** C compiler: gcc C compiler version: Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include/c++/4.2.1 Apple LLVM version 10.0.1 (clang-1001.0.46.4) Target: x86_64-apple-darwin18.7.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin **************************************************** Package 'pynac' is currently not installed No legacy uninstaller found for 'pynac'; nothing to do Starting build... Running build_pynac... Configuring pynac-0.7.26.sage-2020-04-03.p0 configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether sage-python23 version is >= 2.7... yes checking for sage-python23 version... 3.8 checking for sage-python23 platform... darwin checking for sage-python23 script directory... ${prefix}/lib/python3.8/site-packages checking for sage-python23 extension module directory... ${exec_prefix}/lib/python3.8/site-packages checking for Python preprocessor flags... -I/usr/local/Cellar/python@3.8/3.8.5/Frameworks/Python.framework/Versions/3.8/include/python3.8 -I/usr/local/Cellar/python@3.8/3.8.5/Frameworks/Python.framework/Versions/3.8/include/python3.8 -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers checking for Python library flags... -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -L/Users/bthompson/Dropbox/Sage_development/local/lib -Wl,-rpath,/Users/bthompson/Dropbox/Sage_development/local/lib checking build system type... x86_64-apple-darwin18.7.0 checking host system type... x86_64-apple-darwin18.7.0 checking for Cygwin... checking whether make supports nested variables... (cached) yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++ -std=gnu++11... none checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking how to print strings... printf checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... rm: conftest.dSYM: is a directory yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... rm: conftest.dSYM: is a directory BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking how to convert x86_64-apple-darwin18.7.0 file names to x86_64-apple-darwin18.7.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin18.7.0 file names to toolchain format... func_convert_file_noop checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... rm: conftest.dSYM: is a directory no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... rm: conftest.dSYM: is a directory ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin18.7.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking for ld used by g++ -std=gnu++11... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking whether the g++ -std=gnu++11 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking for g++ -std=gnu++11 option to produce PIC... -fno-common -DPIC checking if g++ -std=gnu++11 PIC flag -fno-common -DPIC works... yes checking if g++ -std=gnu++11 static flag -static works... no checking if g++ -std=gnu++11 supports -c -o file.o... yes checking if g++ -std=gnu++11 supports -c -o file.o... (cached) yes checking whether the g++ -std=gnu++11 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin18.7.0 dyld checking how to hardcode library paths into programs... immediate checking gmp.h usability... yes checking gmp.h presence... yes checking for gmp.h... yes checking for library containing __gmpz_get_str... -lgmp checking flint/fmpq_poly.h usability... yes checking flint/fmpq_poly.h presence... yes checking for flint/fmpq_poly.h... yes checking for library containing fmpq_get_mpz_frac... -lflint checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of long double... 16 checking size of void *... 8 checking whether g++ -std=gnu++11 supports C++11 features with -std=c++11... yes checking iosfwd usability... yes checking iosfwd presence... yes checking for iosfwd... yes checking iostream usability... yes checking iostream presence... yes checking for iostream... yes checking vector usability... yes checking vector presence... yes checking for vector... yes checking list usability... yes checking list presence... yes checking for list... yes checking map usability... yes checking map presence... yes checking for map... yes checking string usability... yes checking string presence... yes checking for string... yes checking sstream usability... yes checking sstream presence... yes checking for sstream... yes checking typeinfo usability... yes checking typeinfo presence... yes checking for typeinfo... yes checking stdexcept usability... yes checking stdexcept presence... yes checking for stdexcept... yes checking algorithm usability... yes checking algorithm presence... yes checking for algorithm... yes checking limits usability... yes checking limits presence... yes checking for limits... yes checking for pkg-config... /usr/local/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for FACTORY... yes checking for rm... /bin/rm checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating pynac.spec config.status: creating pynac.pc config.status: creating ginac/Makefile config.status: creating ginac/version.h config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing pynac-config.h commands config.status: creating pynac-config.h - prefix PYNAC for config.h defines configure: WARNING: unrecognized options: --disable-maintainer-mode Configuration of GiNaC 0.7.26.sage-2020-04-03 done. Now type "make". Building pynac-0.7.26.sage-2020-04-03.p0 make all-recursive Making all in ginac /bin/bash ../libtool --tag=CXX --mode=compile g++ -std=gnu++11 -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/Cellar/python@3.8/3.8.5/Frameworks/Python.framework/Versions/3.8/include/python3.8 -I/usr/local/Cellar/python@3.8/3.8.5/Frameworks/Python.framework/Versions/3.8/include/python3.8 -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -DSING_NDEBUG -DOM_NDEBUG -DSING_NDEBUG -DOM_NDEBUG -I/Users/bthompson/Dropbox/Sage_development/local/include/ -Wall -Wextra -Wshadow -Wnon-virtual-dtor -Wno-unused-parameter -Wno-unknown-pragmas -Wno-parentheses-equality -O2 -g -c -o libpynac_la-add.lo `test -f 'add.cpp' || echo './'`add.cpp libtool: compile: g++ -std=gnu++11 -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/Cellar/python@3.8/3.8.5/Frameworks/Python.framework/Versions/3.8/include/python3.8 -I/usr/local/Cellar/python@3.8/3.8.5/Frameworks/Python.framework/Versions/3.8/include/python3.8 -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -DSING_NDEBUG -DOM_NDEBUG -DSING_NDEBUG -DOM_NDEBUG -I/Users/bthompson/Dropbox/Sage_development/local/include/ -Wall -Wextra -Wshadow -Wnon-virtual-dtor -Wno-unused-parameter -Wno-unknown-pragmas -Wno-parentheses-equality -O2 -g -c add.cpp -fno-common -DPIC -o .libs/libpynac_la-add.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -std=gnu++11 -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/Cellar/python@3.8/3.8.5/Frameworks/Python.framework/Versions/3.8/include/python3.8 -I/usr/local/Cellar/python@3.8/3.8.5/Frameworks/Python.framework/Versions/3.8/include/python3.8 -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -DSING_NDEBUG -DOM_NDEBUG -DSING_NDEBUG -DOM_NDEBUG -I/Users/bthompson/Dropbox/Sage_development/local/include/ -Wall -Wextra -Wshadow -Wnon-virtual-dtor -Wno-unused-parameter -Wno-unknown-pragmas -Wno-parentheses-equality -O2 -g -c -o libpynac_la-archive.lo `test -f 'archive.cpp' || echo './'`archive.cpp In file included from add.cpp:23: In file included from ./add.h:26: In file included from ./expairseq.h:27: In file included from ./expair.h:27: ./numeric.h:53:10: fatal error: 'gmp.h' file not found #include <gmp.h> ^~~~~~~ libtool: compile: g++ -std=gnu++11 -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/Cellar/python@3.8/3.8.5/Frameworks/Python.framework/Versions/3.8/include/python3.8 -I/usr/local/Cellar/python@3.8/3.8.5/Frameworks/Python.framework/Versions/3.8/include/python3.8 -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -DSING_NDEBUG -DOM_NDEBUG -DSING_NDEBUG -DOM_NDEBUG -I/Users/bthompson/Dropbox/Sage_development/local/include/ -Wall -Wextra -Wshadow -Wnon-virtual-dtor -Wno-unused-parameter -Wno-unknown-pragmas -Wno-parentheses-equality -O2 -g -c archive.cpp -fno-common -DPIC -o .libs/libpynac_la-archive.o 1 error generated. make[7]: *** [libpynac_la-add.lo] Error 1 make[7]: *** Waiting for unfinished jobs.... In file included from archive.cpp:30: ./numeric.h:53:10: fatal error: 'gmp.h' file not found #include <gmp.h> ^~~~~~~ 1 error generated. make[7]: *** [libpynac_la-archive.lo] Error 1 make[6]: *** [all-recursive] Error 1 make[5]: *** [all] Error 2 ******************************************************************************** Error building pynac-0.7.26.sage-2020-04-03.p0 ******************************************************************************** real 0m46.508s user 0m15.831s sys 0m10.303s ************************************************************************ Error installing package pynac-0.7.26.sage-2020-04-03.p0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /Users/bthompson/Dropbox/Sage_development/logs/pkgs/pynac-0.7.26.sage-2020-04-03.p0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /Users/bthompson/Dropbox/Sage_development/local/var/tmp/sage/build/pynac-0.7.26.sage-2020-04-03.p0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/Users/bthompson/Dropbox/Sage_development/local/var/tmp/sage/build/pynac-0.7.26.sage-2020-04-03.p0' && '/Users/bthompson/Dropbox/Sage_development/sage' --buildsh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
