On Wed, Dec 16, 2020 at 10:27 AM Pierre Vanhove <vanhove.pie...@gmail.com> wrote: > > Hi > >You seem to be trying with the same semi-broken Command Line Tools as > >we discussed yesterday. > >Could you please consider installing the latest XCode? > > I have done this and my version of Xcode is Version 12.3 (12C33) > and > % xcode-select -v > xcode-select version 2373. >
Have you ungraded Homebrew and run brew doctor afterwards? ? I suspect you still have that dodgy headers in /usr/local/include that we discussed yesterday. (check out the top level config.log for this) > Now, compilation just fails at > > [setuptools_scm-4.1.2] Error installing package setuptools_scm-4.1.2 > > Pierre > Le mercredi 16 décembre 2020 à 10:51:19 UTC+1, dim...@gmail.com a écrit : >> >> On Wed, Dec 16, 2020 at 9:34 AM Pierre Vanhove <vanhove...@gmail.com> wrote: >> > >> > Hi - so I've tried to recompile (after distclean etc. ) now I get another >> > compilation error >> > >> > Error installing package markupsafe-1.1.1 >> >> You seem to be trying with the same semi-broken Command Line Tools as >> we discussed yesterday. >> Could you please consider installing the latest XCode? >> >> these errors get weirder and weirder. >> >> Package 'markupsafe' is currently not installed >> No legacy uninstaller found for 'markupsafe'; nothing to do >> Installing markupsafe-1.1.1 >> Error: Tried to use Sage's Python which was not yet installed. >> If this was called from an spkg-install script for another >> package you should add $(PYTHON) as a dependency in >> build/pkgs/<pkg>/dependencies >> Error: could not determine package name >> >> It says in effect that you need to add $(PYTHON) to >> build/pkgs/markupsafe/dependencies >> >> - but it is already there as far as I can see. >> >> >> >> > >> > >> > Le mercredi 16 décembre 2020 à 10:01:26 UTC+1, dim...@gmail.com a écrit : >> >> >> >> It is not usual that the 1st run went ok, but the next one crashed on >> >> startup. >> >> Could you try to move away ~/.sage/ and see if it helps? >> >> (it tends to accumulate incompatible stuff and during updates cause >> >> all sorts of issues) >> >> >> >> If it doesn't help: >> >> >> >> Could you provide the output of >> >> >> >> otool -L /Users/pierre/local/lib/libSingular-4.1.1.dylib >> >> >> >> On Wed, Dec 16, 2020 at 8:22 AM Pierre Vanhove <vanhove...@gmail.com> >> >> wrote: >> >> > >> >> > Here is the crash report >> >> > >> >> > >> >> > >> >> > Le mercredi 16 décembre 2020 à 09:17:14 UTC+1, Pierre Vanhove a écrit : >> >> >> >> >> >> Hi >> >> >> >> >> >> thanks for the tips. So I have recompiled sage successfully >> >> >> >> >> >> touch >> >> >> "/Users/pierre/local/sage-9.3.beta4/local/var/lib/sage/installed/sagelib-9.3.beta4" >> >> >> "/Users/pierre/local/sage-9.3.beta4/build/bin/sage-starts" >> >> >> >> >> >> Testing that Sage starts... >> >> >> [2020-12-16 01:46:39] SageMath version 9.3.beta4, Release Date: >> >> >> 2020-12-14 >> >> >> This looks like the first time you are running Sage. >> >> >> Cleaning up, do not interrupt this. >> >> >> Done cleaning. >> >> >> Yes, Sage starts. >> >> >> >> >> >> In a terminal window, I started sage. Did 1+1 test. I quit sage, and >> >> >> launch it again, and sage crashes >> >> >> >> >> >> ImportError: >> >> >> dlopen(/Users/pierre/local/lib/python3.9/site-packages/sage/matrix/matrix_mpolynomial_dense.cpython-39-darwin.so, >> >> >> 2): Library not loaded: >> >> >> /Users/pierre/local/lib/libSingular-4.1.1.dylib >> >> >> Referenced from: >> >> >> /Users/pierre/local/lib/python3.9/site-packages/sage/matrix/matrix_mpolynomial_dense.cpython-39-darwin.so >> >> >> Reason: image not found >> >> >> >> >> >> I'm sending a crash report. >> >> >> >> >> >> Pierre >> >> >> >> >> >> >> >> >> Le mardi 15 décembre 2020 à 21:31:23 UTC+1, zsc...@gmail.com a écrit : >> >> >>> >> >> >>> You can safely ignore that message. I think there is some ongoing >> >> >>> work being done on changing how sage handles recommended packages and >> >> >>> that message is a byproduct. If it's really bothering you then you >> >> >>> can just type: >> >> >>> >> >> >>> make _recommended >> >> >>> >> >> >>> and I think that message should disappear. >> >> >>> >> >> >>> On Tuesday, December 15, 2020 at 3:24:12 PM UTC-5 >> >> >>> vanhove...@gmail.com wrote: >> >> >>>> >> >> >>>> hi >> >> >>>> >> >> >>>> I have cleanup my /usr/local - reinstalled a fresh brew and Xcode. >> >> >>>> I have run ./configure in sage-9.3-beta4 that complained about >> >> >>>> missing homebrew package. I have installed them. >> >> >>>> % brew list >> >> >>>> aom fribidi harfbuzz libheif little-cms2 pandoc srt >> >> >>>> arb gcc icu4c libidn2 lzo pcre suite-sparse >> >> >>>> bdw-gc gd igraph liblqr metis pcre2 tbb >> >> >>>> boost gdbm ilmbase libmpc mpfi pixman tesseract >> >> >>>> c-ares gettext imagemagick libogg mpfr pkg-config texinfo >> >> >>>> cairo ghostscript isl libomp nauty ppl theora >> >> >>>> cmake giflib jemalloc libpng nettle python@3.9 tox >> >> >>>> coreutils glib jpeg libsamplerate nghttp2 r unbound >> >> >>>> dav1d glpk lame libsndfile ninja rav1e webp >> >> >>>> docbook gmp leptonica libsoxr ntl readline x264 >> >> >>>> docbook-xsl gnu-getopt libass libtasn1 openblas rtmpdump x265 >> >> >>>> ffmpeg gnutls libatomic_ops libtiff opencore-amr rubberband xmlto >> >> >>>> flac gobject-introspection libbluray libtool openexr sdl2 xvid >> >> >>>> flint gpatch libde265 libunistring openjpeg shared-mime-info xz >> >> >>>> fontconfig graphite2 libev libvidstab openssl@1.1 snappy zeromq >> >> >>>> freetype gsl libevent libvorbis opus speex >> >> >>>> frei0r guile libffi libvpx p11-kit sqlite >> >> >>>> >> >> >>>> my homebrew setup is clean >> >> >>>> >> >> >>>> % brew doctor >> >> >>>> Your system is ready to brew. >> >> >>>> >> >> >>>> then boostrapping, sourcing brew environnement and rerun configure >> >> >>>> in sage, I still get the message >> >> >>>> >> >> >>>> $ brew install pandoc ffmpeg imagemagick texinfo >> >> >>>> >> >> >>>> >> >> >>>> Pierre >> >> >>>> >> >> >>>> Le mardi 15 décembre 2020 à 19:57:40 UTC+1, zsc...@gmail.com a écrit >> >> >>>> : >> >> >>>>> >> >> >>>>> Have you tried running "brew doctor"? Homebrew should complain >> >> >>>>> loudly about all of the header files in /usr/local/include which >> >> >>>>> could cause conflicts. For example, if I touch stdio.h in my >> >> >>>>> /usr/local/include and then I run brew doctor I get: >> >> >>>>> >> >> >>>>> "Warning: Unbrewed header files were found in /usr/local/include. >> >> >>>>> If you didn't put them there on purpose they could cause problems >> >> >>>>> when >> >> >>>>> building Homebrew formulae, and may need to be deleted. >> >> >>>>> >> >> >>>>> Unexpected header files: >> >> >>>>> /usr/local/include/stdio.h" >> >> >>>>> >> >> >>>>> I would start with running brew doctor and trying to fix the >> >> >>>>> recommendations there. >> >> >>>>> >> >> >>>>> On Tuesday, December 15, 2020 at 8:43:28 AM UTC-5 dim...@gmail.com >> >> >>>>> wrote: >> >> >>>>>> >> >> >>>>>> On Tue, Dec 15, 2020 at 1:23 PM Pierre Vanhove >> >> >>>>>> <vanhove...@gmail.com> wrote: >> >> >>>>>> > >> >> >>>>>> > hi >> >> >>>>>> > >> >> >>>>>> > >> >> >>>>>> > What did one do yesterday just after 17:00 on the machine? >> >> >>>>>> > Updated Homebrew? Installed macOS command line tools? >> >> >>>>>> > >> >> >>>>>> > >> >> >>>>>> > yes I updated homebrew, but with a bad internet connection and >> >> >>>>>> > the connection broke. I had to redo it. >> >> >>>>>> > >> >> >>>>>> > But curiously, I have deleted the sage-9.2 folder downloaded a >> >> >>>>>> > sage-9.3-beta4 and then worked from the new folder. >> >> >>>>>> > >> >> >>>>>> > I will see if using the backup from my time machine solves the >> >> >>>>>> > problem by going back in time. >> >> >>>>>> >> >> >>>>>> I'd suggest to install the full XCode. The fact that homebrew >> >> >>>>>> apparently created that link indicates >> >> >>>>>> that not all is well; I'd also erase the whole /usr/local and >> >> >>>>>> reinstall Homebrew from scratch, >> >> >>>>>> after XCode is installed. >> >> >>>>>> >> >> >>>>>> macOS, Homebrew, XCode are moving targets, it's hard to keep up >> >> >>>>>> with them. >> >> >>>>>> >> >> >>>>>> > >> >> >>>>>> > Now that they have put sirocco on cocacl, I will work with that. >> >> >>>>>> > And I will leave most of the sage coding to Andrey Novoseltsev >> >> >>>>>> > then since locally I cannot work... >> >> >>>>>> > >> >> >>>>>> > best, Pierre >> >> >>>>>> > >> >> >>>>>> > ======================================================== >> >> >>>>>> > Pierre Vanhove (vanhove...@gmail.com) | web: >> >> >>>>>> > http://sites.google.com/site/vanhovepierre/ >> >> >>>>>> > >> >> >>>>>> > >> >> >>>>>> > >> >> >>>>>> > >> >> >>>>>> > >> >> >>>>>> > >> >> >>>>>> > -- >> >> >>>>>> > You received this message because you are subscribed to the >> >> >>>>>> > Google Groups "sage-devel" group. >> >> >>>>>> > To unsubscribe from this group and stop receiving emails from >> >> >>>>>> > it, send an email to sage-devel+...@googlegroups.com. >> >> >>>>>> > To view this discussion on the web visit >> >> >>>>>> > https://groups.google.com/d/msgid/sage-devel/95B792F4-B444-4DBB-8E4B-2846A020C683%40gmail.com. >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups "sage-devel" group. >> >> > To unsubscribe from this group and stop receiving emails from it, send >> >> > an email to sage-devel+...@googlegroups.com. >> >> > To view this discussion on the web visit >> >> > https://groups.google.com/d/msgid/sage-devel/f8466fc7-c21d-457e-8204-03c9ddc9fcd4n%40googlegroups.com. >> > >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "sage-devel" group. >> > To unsubscribe from this group and stop receiving emails from it, send an >> > email to sage-devel+...@googlegroups.com. >> > To view this discussion on the web visit >> > https://groups.google.com/d/msgid/sage-devel/2286952c-9ffb-4f68-9b60-9487fd7275cbn%40googlegroups.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/7381f769-dc73-46f0-9fbf-a57091267298n%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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