You can safely ignore that message. I think there is some ongoing work being done on changing how sage handles recommended packages and that message is a byproduct. If it's really bothering you then you can just type:
make _recommended and I think that message should disappear. On Tuesday, December 15, 2020 at 3:24:12 PM UTC-5 vanhove...@gmail.com wrote: > hi > > I have cleanup my /usr/local - reinstalled a fresh brew and Xcode. > I have run ./configure in sage-9.3-beta4 that complained about missing > homebrew package. I have installed them. > % brew list > aom fribidi harfbuzz libheif little-cms2 pandoc srt > arb gcc icu4c libidn2 lzo pcre suite-sparse > bdw-gc gd igraph liblqr metis pcre2 tbb > boost gdbm ilmbase libmpc mpfi pixman tesseract > c-ares gettext imagemagick libogg mpfr pkg-config texinfo > cairo ghostscript isl libomp nauty ppl theora > cmake giflib jemalloc libpng nettle python@3.9 tox > coreutils glib jpeg libsamplerate nghttp2 r unbound > dav1d glpk lame libsndfile ninja rav1e webp > docbook gmp leptonica libsoxr ntl readline x264 > docbook-xsl gnu-getopt libass libtasn1 openblas rtmpdump x265 > ffmpeg gnutls libatomic_ops libtiff opencore-amr rubberband xmlto > flac gobject-introspection libbluray libtool openexr sdl2 xvid > flint gpatch libde265 libunistring openjpeg shared-mime-info xz > fontconfig graphite2 libev libvidstab openssl@1.1 snappy zeromq > freetype gsl libevent libvorbis opus speex > frei0r guile libffi libvpx p11-kit sqlite > > my homebrew setup is clean > > % brew doctor > Your system is ready to brew. > > then boostrapping, sourcing brew environnement and rerun configure in > sage, I still get the message > > $ brew install pandoc ffmpeg imagemagick texinfo > > > Pierre > > Le mardi 15 décembre 2020 à 19:57:40 UTC+1, zsc...@gmail.com a écrit : > >> Have you tried running "brew doctor"? Homebrew should complain loudly >> about all of the header files in /usr/local/include which could cause >> conflicts. For example, if I touch stdio.h in my /usr/local/include and >> then I run brew doctor I get: >> >> "Warning: Unbrewed header files were found in /usr/local/include. >> If you didn't put them there on purpose they could cause problems when >> building Homebrew formulae, and may need to be deleted. >> >> Unexpected header files: >> /usr/local/include/stdio.h" >> >> I would start with running brew doctor and trying to fix the >> recommendations there. >> >> On Tuesday, December 15, 2020 at 8:43:28 AM UTC-5 dim...@gmail.com wrote: >> >>> On Tue, Dec 15, 2020 at 1:23 PM Pierre Vanhove <vanhove...@gmail.com> >>> wrote: >>> > >>> > hi >>> > >>> > >>> > What did one do yesterday just after 17:00 on the machine? >>> > Updated Homebrew? Installed macOS command line tools? >>> > >>> > >>> > yes I updated homebrew, but with a bad internet connection and the >>> connection broke. I had to redo it. >>> > >>> > But curiously, I have deleted the sage-9.2 folder downloaded a >>> sage-9.3-beta4 and then worked from the new folder. >>> > >>> > I will see if using the backup from my time machine solves the problem >>> by going back in time. >>> >>> I'd suggest to install the full XCode. The fact that homebrew >>> apparently created that link indicates >>> that not all is well; I'd also erase the whole /usr/local and >>> reinstall Homebrew from scratch, >>> after XCode is installed. >>> >>> macOS, Homebrew, XCode are moving targets, it's hard to keep up with >>> them. >>> >>> > >>> > Now that they have put sirocco on cocacl, I will work with that. And I >>> will leave most of the sage coding to Andrey Novoseltsev then since locally >>> I cannot work... >>> > >>> > best, Pierre >>> > >>> > ======================================================== >>> > Pierre Vanhove (vanhove...@gmail.com) | web: >>> http://sites.google.com/site/vanhovepierre/ >>> > >>> > >>> > >>> > >>> > >>> > >>> > -- >>> > You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> an email to sage-devel+...@googlegroups.com. >>> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/95B792F4-B444-4DBB-8E4B-2846A020C683%40gmail.com. >>> >>> >>> >> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/f920aedb-aeb3-45f0-808e-7b026656dcf0n%40googlegroups.com.
