Just want to confirm that I have the same problem: just a black jmol box in Sage Notebook 3.2.3 Firefox 3.0.6 on XP.
when I try the ubc test examples, 1 and 3 work reliably. But I have only been able to make 2 run once successfully. Otherwise, it's a black box too. ay On Jan 11, 10:53 pm, Jonathan <gu...@uwosh.edu> wrote: > Hi, > I'm convinced this is a javascript issue. When developing pages > that include Jmol I use the special package of Jmol specific > javascript functions included in the jmol.js file included with Jmol, > because each browser has some quirks. As best I can tell this package > is not being used by the notebook. This may be the problem. If > someone can point me to the code that generates the jmol parts of > pages for the notebook, I can take a look. However, I make no > promises. > > Jonathan > a Jmol developer > > On Dec 26 2008, 10:18 am, Kathy Gerber <kathyma...@gmail.com> wrote: > > > I am not able to resolve the problems with Jmol. When I view on the > > Jmol site, the applet loads and runs fine. Now when I try to do > > parametric plot in the references on sagenb.org, I see the black box. > > I can right click and manipulate the view, but here is the output of > > the java console: > > > Jmol applet jmolApplet9__6248650044861166__ destroyed > > Jmol applet jmolApplet10__6248650044861166__ initializing > > language=en_US > > urlImage=jar:http://www.sagenb.org/java/jmol/JmolApplet0.jar!/ > > jmol75x29x8.gif > > AppletRegistry.checkIn(jmolApplet10__6248650044861166__) > > (C) 2008 Jmol Development > > Jmol Version 11.6.RC8 2008-08-14 22:55 > > java.vendor:Sun Microsystems Inc. > > java.version:1.6.0_07 > > os.name:Windows XP > > memory:24.1/33.4 > > useCommandThread: false > > appletId:jmolApplet10__6248650044861166__ > > appletDocumentBase=http://www.sagenb.org/doc/live/ref/module- > > sage.plot.plot3d.parametric-plot3d.html > > appletCodeBase=http://www.sagenb.org/java/jmol/ > > popup menu not available > > defaults = "Jmol" > > backgroundColor = "black" > > FileManager > > openinghttp://www.sagenb.org/home/_sage_/1469/cells/36/sage0-size500.jmol?3 > > FileManager > > openinghttp://www.sagenb.org/doc/live/ref/sage0-size500-562242044.jmol.zip > > script ERROR: io error > > readinghttp://www.sagenb.org/doc/live/ref/sage0-size500-562242044.jmol.zip|SCRIPT: > > java.io.FileNotFoundException:http://www.sagenb.org/doc/live/ref/sage0-size500-562242044.jmol.zip > > eval ERROR: > > ----line 2 command 2 of file /home/_sage_/1469/cells/36/sage0- > > size500.jmol?3: > > script >> "SCRIPT" << > > ----line 1 command 1 of file null: > > script >> "/home/_sage_/1469/cells/36/sage0-size500.jmol?3" > > << > > ================================== > > I've had worse luck running locally. I've tried compiling on FC10, > > and the libraries from the Sun JRE were needed. After going through > > the Sun JRE process, a new set of sage compile errors had to do with > > missing ant. > > > I hope this is of some help in isolating the problem. I've tried > > several browsers on several platforms, and generally can use sage and > > can use jmol applets, but cannot use jmol applets via sage. > > > Kathy Gerber > > > On Dec 13, 6:09 pm, Jaap Spies <j.sp...@hccnet.nl> wrote: > > > > Jonathan wrote: > > > > Hi Jonathan, > > > > > As aJmoldeveloper and probable user ofSagefor my classes, I/we > > > > definitely would like to help. I've done a little investigating on a > > > >Sageinstallation on my computer running MacOS 11.4.11. I can > > > > reproduce the problem, but it is not showing up the way I expect in > > > > the page source generated by theSageserver. What I see is that not > > > > everything is showing up in the page source in FF. Is there something > > > > different about the way you package things for FF versus other > > > > browsers? Here's what I see: > > > > I hope this will work out on Fedora too! > > > > What I see is grey squares, for instance > > > in:http://www.math.ubc.ca/~mcleane/jmoltest/simple.htm > > > with FF-3.0.4 with Java plugin 1.6.0_06 > > > > FromSagethe same grey squares! > > > > Jaap --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to sage-devel-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~----------~----~----~----~------~----~------~--~---
