You tried the ipython 5.0 ticket, I presume.

This left an empty directory lying around. Git doesn't know about empty 
directories, but our build system assumes that it is a package. And then 
fails and writes an incomplete makefile. You need to 
delete build/pkgs/prompt_toolkit, either by hand or via "git clean -fdx" 
(the latter will throw away everything that isn't checked in).



On Tuesday, July 26, 2016 at 9:55:48 PM UTC+2, Paul Masson wrote:
>
> Running "configure" resulted in a makefile that terminates at the same 
> package. Here's some possibly relevant error messages from the configure 
> process:
>
>     planarity-2.2.0
>
>     plantri-4.5
>
>     polytopes_db-20120220
>
> "/Users/Masson/Downloads/GitHub/sage/build/pkgs/prompt_toolkit/type" is 
> missing.
>
>     ppl-1.1
>
> "/Users/Masson/Downloads/GitHub/sage/build/pkgs/prompt_toolkit/type" is 
> missing.
>
> "/Users/Masson/Downloads/GitHub/sage/build/pkgs/prompt_toolkit/type" is 
> missing.
>
> "/Users/Masson/Downloads/GitHub/sage/build/pkgs/prompt_toolkit/type" is 
> missing.
>
> "/Users/Masson/Downloads/GitHub/sage/build/pkgs/prompt_toolkit/type" is 
> missing.
>
> checking that generated files are newer than configure... done
>
> configure: creating ./config.status
>
>
> On Tuesday, July 26, 2016 at 6:31:36 AM UTC-7, leif wrote:
>>
>> Paul Masson wrote: 
>> > 
>> > MacBook-Retina:~ Masson$ cd 
>> > Downloads/GitHub/sage/local/var/lib/sage/installed 
>> > 
>> > MacBook-Retina:installed Masson$ ls 
>> > 
>> > arb-2.8.1.p0gcc-4.9.3.p1mpfr-3.1.4patch-2.7.5 
>> > 
>> > bzip2-1.0.6-20150304gf2x-1.1.p1mpir-2.7.2pkgconf-0.9.7 
>> > 
>> > flint-2.5.2.p0mpc-1.0.3.p0ntl-9.6.2.p1 
>>
>> So that's ok. 
>>
>> But the generated parts of your build/make/Makefile lack a lot of 
>> packages (starting with "pt" to "z" *), so the bug is already in 
>> `configure`. 
>>
>> I'd suggest to save a copy of your current build/make/Makefile somewhere 
>> for later comparison, rerun ./configure, and see whether you get a 
>> different (especially longer) build/make/Makefile after doing so. 
>>
>> (If it hasn't changed, there's no point in rerunning 'make'.) 
>>
>>
>> -leif 
>>
>> __________ 
>> * every package after PPL, i.e. ptyprocess pybtex pycrypto pyflakes 
>> pygments pynac pyopenssl pyparsing python2 python3 python_igraph 
>> python_openid pytz pyzmq qepcad r r_jupyter ratpoints readline rpy2 
>> rubiks rw saclib sage_mode sagenb sagetex scipy scons setuptools 
>> setuptools_scm simplegeneric singledispatch singular six snowballstemmer 
>> speaklater sphinx sqlalchemy sqlite symmetrica sympow sympy tachyon 
>> tdlib termcap threejs tides topcom tornado trac traitlets twisted 
>> valgrind vcversioner werkzeug zeromq zlib zn_poly zope_interface 
>>
>>
>> > On Monday, July 25, 2016 at 8:26:25 PM UTC-7, leif wrote: 
>> > 
>> >     Paul Masson wrote: 
>> >     > Ran make again without specifying any jobs, which I understand to 
>> >     be the 
>> >     > same as specifying one job. Same error from Atlas this time as 
>> well. 
>> >     > Here's the contents of that log: 
>> >     > 
>> >     > Found local metadata for atlas-3.10.2.p2 
>> >     > Attempting to download package atlas-3.10.2.tar.bz2 from mirrors 
>> >     > 
>> >     
>> http://mirrors.xmission.com/sage/spkg/upstream/atlas/atlas-3.10.2.tar.bz2 
>> >     <
>> http://mirrors.xmission.com/sage/spkg/upstream/atlas/atlas-3.10.2.tar.bz2> 
>>
>> > 
>> >     > 
>> >     
>> [.......................................................................] 
>> > 
>> >     > atlas-3.10.2..p2 
>> >     > ==================================================== 
>> >     > Setting up build directory for atlas-3.10.2..p2 
>> >     > Finished set up 
>> >     > Error: The spkg-install script is written in Python, but the 
>> Python 
>> >     > package is not yet installed in Sage.  You should add $(PYTHON) 
>> >     > as dependency in build/pkgs/atlas/dependencies 
>> > 
>> >     Yep.  Both errors (in ATLAS and Cython) have the same cause, namely 
>> >     that 
>> >     Sage's Python doesn't get built.  (I know how I could manage to get 
>> the 
>> >     same errors, but in your case something else seems to be wrong.) 
>> > 
>> >     Could you post your build/make/Makefile somewhere, too?  (It's not 
>> that 
>> >     large, but long, ~2900 lines...) 
>> > 
>> > 
>> >     And to go triple-safe, the output of 'ls 
>> >     local/var/lib/sage/installed/'. 
>> > 
>> > 
>> >     -leif 
>> > 
>> >     > On Monday, July 25, 2016 at 4:47:06 PM UTC-7, leif wrote: 
>> >     > 
>> >     >     Paul Masson wrote: 
>> >     >     > Sorry about that Leif. My bad. 
>> >     >     > 
>> >     >     > I'm the only person using this machine, so I'm the 
>> >     administrator. The 
>> >     >     > directory in the Cython error is a system directory. 
>> >     > 
>> >     >     Yes, and Sage shouldn't try to write to /that/. 
>> >     > 
>> >     > 
>> >     >     > I think my very first build of 7.2 a couple months ago was 
>> >     not a 
>> >     >     > parallel build: is that an issue for an initial build? 
>> >     > 
>> >     >     It shouldn't, but somehow Sage's Python apparently doesn't 
>> get 
>> >     built 
>> >     >     [early enough]; you may try to build with just one 'make' job 
>> >     ('-j1'), 
>> >     >     be it just to better track down what's going wrong. 
>> >     > 
>> >     > 
>> >     >     People on MacOS X will have better suggestions I guess. 
>> >     > 
>> >     > 
>> >     >     -leif 
>>
>>
>>

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