Success! Many thanks to all who contributed.

On Tuesday, July 26, 2016 at 1:19:55 PM UTC-7, Paul Masson wrote:
>
> The error message here led me to look at the "prompt_toolkit" package. 
> That directory is empty, as is one for "wcwidth". Removing both folders 
> resulted in a makefile with all actual packages. Running make again now.
>
> The supposed packages "prompt_toolkit" and "wcwidth" aren't part of either 
> the current master or develop branch. Could they have wandered in from some 
> old Trac ticket I reviewed?
>
> On Tuesday, July 26, 2016 at 12:55:48 PM UTC-7, Paul Masson wrote:
>>
>> Running "configure" resulted in a makefile that terminates at the same 
>> package. Here's some possibly relevant error messages from the configure 
>> process:
>>
>>     planarity-2.2.0
>>
>>     plantri-4.5
>>
>>     polytopes_db-20120220
>>
>> "/Users/Masson/Downloads/GitHub/sage/build/pkgs/prompt_toolkit/type" is 
>> missing.
>>
>>     ppl-1.1
>>
>> "/Users/Masson/Downloads/GitHub/sage/build/pkgs/prompt_toolkit/type" is 
>> missing.
>>
>> "/Users/Masson/Downloads/GitHub/sage/build/pkgs/prompt_toolkit/type" is 
>> missing.
>>
>> "/Users/Masson/Downloads/GitHub/sage/build/pkgs/prompt_toolkit/type" is 
>> missing.
>>
>> "/Users/Masson/Downloads/GitHub/sage/build/pkgs/prompt_toolkit/type" is 
>> missing.
>>
>> checking that generated files are newer than configure... done
>>
>> configure: creating ./config.status
>>
>>
>> On Tuesday, July 26, 2016 at 6:31:36 AM UTC-7, leif wrote:
>>>
>>> Paul Masson wrote: 
>>> > 
>>> > MacBook-Retina:~ Masson$ cd 
>>> > Downloads/GitHub/sage/local/var/lib/sage/installed 
>>> > 
>>> > MacBook-Retina:installed Masson$ ls 
>>> > 
>>> > arb-2.8.1.p0gcc-4.9.3.p1mpfr-3.1.4patch-2.7.5 
>>> > 
>>> > bzip2-1.0.6-20150304gf2x-1.1.p1mpir-2.7.2pkgconf-0.9.7 
>>> > 
>>> > flint-2.5.2.p0mpc-1.0.3.p0ntl-9.6.2.p1 
>>>
>>> So that's ok. 
>>>
>>> But the generated parts of your build/make/Makefile lack a lot of 
>>> packages (starting with "pt" to "z" *), so the bug is already in 
>>> `configure`. 
>>>
>>> I'd suggest to save a copy of your current build/make/Makefile somewhere 
>>> for later comparison, rerun ./configure, and see whether you get a 
>>> different (especially longer) build/make/Makefile after doing so. 
>>>
>>> (If it hasn't changed, there's no point in rerunning 'make'.) 
>>>
>>>
>>> -leif 
>>>
>>> __________ 
>>> * every package after PPL, i.e. ptyprocess pybtex pycrypto pyflakes 
>>> pygments pynac pyopenssl pyparsing python2 python3 python_igraph 
>>> python_openid pytz pyzmq qepcad r r_jupyter ratpoints readline rpy2 
>>> rubiks rw saclib sage_mode sagenb sagetex scipy scons setuptools 
>>> setuptools_scm simplegeneric singledispatch singular six snowballstemmer 
>>> speaklater sphinx sqlalchemy sqlite symmetrica sympow sympy tachyon 
>>> tdlib termcap threejs tides topcom tornado trac traitlets twisted 
>>> valgrind vcversioner werkzeug zeromq zlib zn_poly zope_interface 
>>>
>>>
>>> > On Monday, July 25, 2016 at 8:26:25 PM UTC-7, leif wrote: 
>>> > 
>>> >     Paul Masson wrote: 
>>> >     > Ran make again without specifying any jobs, which I understand 
>>> to 
>>> >     be the 
>>> >     > same as specifying one job. Same error from Atlas this time as 
>>> well. 
>>> >     > Here's the contents of that log: 
>>> >     > 
>>> >     > Found local metadata for atlas-3.10.2.p2 
>>> >     > Attempting to download package atlas-3.10.2.tar.bz2 from mirrors 
>>> >     > 
>>> >     
>>> http://mirrors.xmission.com/sage/spkg/upstream/atlas/atlas-3.10.2.tar.bz2 
>>> >     <
>>> http://mirrors.xmission.com/sage/spkg/upstream/atlas/atlas-3.10.2.tar.bz2> 
>>>
>>> > 
>>> >     > 
>>> >     
>>> [.......................................................................] 
>>> > 
>>> >     > atlas-3.10.2..p2 
>>> >     > ==================================================== 
>>> >     > Setting up build directory for atlas-3.10.2..p2 
>>> >     > Finished set up 
>>> >     > Error: The spkg-install script is written in Python, but the 
>>> Python 
>>> >     > package is not yet installed in Sage.  You should add $(PYTHON) 
>>> >     > as dependency in build/pkgs/atlas/dependencies 
>>> > 
>>> >     Yep.  Both errors (in ATLAS and Cython) have the same cause, 
>>> namely 
>>> >     that 
>>> >     Sage's Python doesn't get built.  (I know how I could manage to 
>>> get the 
>>> >     same errors, but in your case something else seems to be wrong.) 
>>> > 
>>> >     Could you post your build/make/Makefile somewhere, too?  (It's not 
>>> that 
>>> >     large, but long, ~2900 lines...) 
>>> > 
>>> > 
>>> >     And to go triple-safe, the output of 'ls 
>>> >     local/var/lib/sage/installed/'. 
>>> > 
>>> > 
>>> >     -leif 
>>> > 
>>> >     > On Monday, July 25, 2016 at 4:47:06 PM UTC-7, leif wrote: 
>>> >     > 
>>> >     >     Paul Masson wrote: 
>>> >     >     > Sorry about that Leif. My bad. 
>>> >     >     > 
>>> >     >     > I'm the only person using this machine, so I'm the 
>>> >     administrator. The 
>>> >     >     > directory in the Cython error is a system directory. 
>>> >     > 
>>> >     >     Yes, and Sage shouldn't try to write to /that/. 
>>> >     > 
>>> >     > 
>>> >     >     > I think my very first build of 7.2 a couple months ago was 
>>> >     not a 
>>> >     >     > parallel build: is that an issue for an initial build? 
>>> >     > 
>>> >     >     It shouldn't, but somehow Sage's Python apparently doesn't 
>>> get 
>>> >     built 
>>> >     >     [early enough]; you may try to build with just one 'make' 
>>> job 
>>> >     ('-j1'), 
>>> >     >     be it just to better track down what's going wrong. 
>>> >     > 
>>> >     > 
>>> >     >     People on MacOS X will have better suggestions I guess. 
>>> >     > 
>>> >     > 
>>> >     >     -leif 
>>>
>>>
>>>

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