Hi Dima, It didn't fix the problem, but that may be because it didn't start with a clean build. I'll let it run overnight and let you know what I get tomorrow.
-Mike On Tuesday, 12 November 2019 14:04:03 UTC-5, Dima Pasechnik wrote: > > I believe that running > > ./configure --without-system-zlib > > followed by > > make > > should allow all these errors to go away. Please try this. > > On Tue, Nov 12, 2019 at 6:51 PM Mike Zabrocki <mike.z...@gmail.com > <javascript:>> wrote: > > > > Clearly I missed the typo. Here is the output of the 4 commands that > are failing now (but this is after the "./configure --without-system-zlib") > > and I am attaching the 4 log files and the config.log file. > > > > [zabrocki@algebra sage-8.9]$ make freetype-clean > > > > make build/make/Makefile --stop > > > > make[1]: Entering directory `/usr/local/sage-8.9' > > > > make[1]: `build/make/Makefile' is up to date. > > > > make[1]: Leaving directory `/usr/local/sage-8.9' > > > > build/bin/sage-logger \ > > > > "cd build/make && ./install 'freetype-clean'" logs/install.log > > > > make[1]: Entering directory `/usr/local/sage-8.9/build/make' > > > > make[1]: Leaving directory `/usr/local/sage-8.9/build/make' > > > > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: *** > > > > } > > > > BASH_FUNC_module()=() { eval `/usr/bin/modulecmd bash $*` > > > > _=/bin/env > > > > CONFIGURED_CC=gcc > > > > CONFIGURED_CXX=g++ > > > > CONFIGURED_FC=gfortran > > > > CONFIGURED_OBJC=gcc > > > > CONFIGURED_OBJCXX=g++ > > > > CVS_RSH=ssh > > > > G_BROKEN_FILENAMES=1 > > > > HISTCONTROL=ignoredups > > > > HISTSIZE=1000 > > > > HOME=/home/zabrocki > > > > HOSTNAME=algebra.math.yorku.ca > > > > LANG=en_US.UTF-8 > > > > LESSOPEN=||/usr/bin/lesspipe.sh %s > > > > LOADEDMODULES= > > > > LOGNAME=zabrocki > > > > > 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> > > > > > MAIL=/var/spool/mail/zabrocki > > > > MAKEFLAGS= V=1 > > > > MAKELEVEL=1 > > > > MAKE=make > > > > MFLAGS= > > > > MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles > > > > MODULESHOME=/usr/share/Modules > > > > > PATH=/usr/local/sage-8.9/build/bin:/usr/local/sage-8.9/src/bin:/usr/local/sage-8.9/local/bin:.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin > > > > > > PG_ROOT=/opt/webwork/pg > > > > PWD=/usr/local/sage-8.9/build/make > > > > PYTHONPATH=/usr/local/sage-8.9/local > > > > QTDIR=/usr/lib64/qt-3.3 > > > > QTINC=/usr/lib64/qt-3.3/include > > > > QTLIB=/usr/lib64/qt-3.3/lib > > > > SAGE_ARB_LIBRARY=arb > > > > SAGE_BROWSER=firefox > > > > SAGE_CONFIGURE_FLINT=--with-flint=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_GMP=--with-gmp=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_MPC=--with-mpc=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_MPFR=--with-mpfr=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_NTL=--with-ntl=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_PARI=--with-pari=/usr/local/sage-8.9/local > > > > SAGE_CRTI_DIR=/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 > > > > SAGE_EXTCODE=/usr/local/sage-8.9/local/share/sage/ext > > > > SAGE_FLINT_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_FREETYPE_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_GMP_INCLUDE=/usr/local/sage-8.9/local/include > > > > SAGE_GMP_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_LOCAL=/usr/local/sage-8.9/local > > > > SAGE_LOGS=/usr/local/sage-8.9/logs/pkgs > > > > SAGE_MPC_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_MPFR_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_NTL_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_ORIG_PATH_SET=True > > > > > SAGE_ORIG_PATH=.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin > > > > > > SAGE_PARI_CFG=/usr/local/sage-8.9/local/lib/pari/pari.cfg > > > > SAGE_PARI_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_PKG_CONFIG_PATH= > > > > SAGE_PYTHON_VERSION=2 > > > > SAGE_ROOT=/usr/local/sage-8.9 > > > > SAGE_SHARE=/usr/local/sage-8.9/local/share > > > > SAGE_SPKG_INST=/usr/local/sage-8.9/local/var/lib/sage/installed > > > > SAGE_SRC=/usr/local/sage-8.9/src > > > > SAGE_VERSION=8.9 > > > > SELINUX_LEVEL_REQUESTED= > > > > SELINUX_ROLE_REQUESTED= > > > > SELINUX_USE_CURRENT_RANGE= > > > > SHELL=/bin/bash > > > > SHLVL=4 > > > > SSH_CLIENT=130.63.254.6 61734 2029 > > > > SSH_CONNECTION=130.63.254.6 61734 130.63.76.137 2029 > > > > SSH_TTY=/dev/pts/0 > > > > TERM=xterm-256color > > > > USER=zabrocki > > > > WEBWORK_ROOT=/opt/webwork/webwork2 > > > > *********************************************** > > > > make[1]: Entering directory `/usr/local/sage-8.9/build/make' > > > > sage-spkg-uninstall freetype '/usr/local/sage-8.9/local' > > > > Uninstalling existing 'freetype' > > > > Removing stamp file > '/usr/local/sage-8.9/local/var/lib/sage/installed/freetype-2.9.1' > > > > make[1]: Leaving directory `/usr/local/sage-8.9/build/make' > > > > > > real 0m0.095s > > > > user 0m0.073s > > > > sys 0m0.020s > > > > Sage build/upgrade complete! > > > > [zabrocki@algebra sage-8.9]$ make pkgconf-clean > > > > make build/make/Makefile --stop > > > > make[1]: Entering directory `/usr/local/sage-8.9' > > > > make[1]: `build/make/Makefile' is up to date. > > > > make[1]: Leaving directory `/usr/local/sage-8.9' > > > > build/bin/sage-logger \ > > > > "cd build/make && ./install 'pkgconf-clean'" logs/install.log > > > > make[1]: Entering directory `/usr/local/sage-8.9/build/make' > > > > make[1]: Leaving directory `/usr/local/sage-8.9/build/make' > > > > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: *** > > > > } > > > > BASH_FUNC_module()=() { eval `/usr/bin/modulecmd bash $*` > > > > _=/bin/env > > > > CONFIGURED_CC=gcc > > > > CONFIGURED_CXX=g++ > > > > CONFIGURED_FC=gfortran > > > > CONFIGURED_OBJC=gcc > > > > CONFIGURED_OBJCXX=g++ > > > > CVS_RSH=ssh > > > > G_BROKEN_FILENAMES=1 > > > > HISTCONTROL=ignoredups > > > > HISTSIZE=1000 > > > > HOME=/home/zabrocki > > > > HOSTNAME=algebra.math.yorku.ca > > > > LANG=en_US.UTF-8 > > > > LESSOPEN=||/usr/bin/lesspipe.sh %s > > > > LOADEDMODULES= > > > > LOGNAME=zabrocki > > > > > 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> > > > > > MAIL=/var/spool/mail/zabrocki > > > > MAKEFLAGS= V=1 > > > > MAKELEVEL=1 > > > > MAKE=make > > > > MFLAGS= > > > > MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles > > > > MODULESHOME=/usr/share/Modules > > > > > PATH=/usr/local/sage-8.9/build/bin:/usr/local/sage-8.9/src/bin:/usr/local/sage-8.9/local/bin:.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin > > > > > > PG_ROOT=/opt/webwork/pg > > > > PWD=/usr/local/sage-8.9/build/make > > > > PYTHONPATH=/usr/local/sage-8.9/local > > > > QTDIR=/usr/lib64/qt-3.3 > > > > QTINC=/usr/lib64/qt-3.3/include > > > > QTLIB=/usr/lib64/qt-3.3/lib > > > > SAGE_ARB_LIBRARY=arb > > > > SAGE_BROWSER=firefox > > > > SAGE_CONFIGURE_FLINT=--with-flint=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_GMP=--with-gmp=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_MPC=--with-mpc=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_MPFR=--with-mpfr=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_NTL=--with-ntl=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_PARI=--with-pari=/usr/local/sage-8.9/local > > > > SAGE_CRTI_DIR=/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 > > > > SAGE_EXTCODE=/usr/local/sage-8.9/local/share/sage/ext > > > > SAGE_FLINT_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_FREETYPE_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_GMP_INCLUDE=/usr/local/sage-8.9/local/include > > > > SAGE_GMP_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_LOCAL=/usr/local/sage-8.9/local > > > > SAGE_LOGS=/usr/local/sage-8.9/logs/pkgs > > > > SAGE_MPC_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_MPFR_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_NTL_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_ORIG_PATH_SET=True > > > > > SAGE_ORIG_PATH=.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin > > > > > > SAGE_PARI_CFG=/usr/local/sage-8.9/local/lib/pari/pari.cfg > > > > SAGE_PARI_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_PKG_CONFIG_PATH= > > > > SAGE_PYTHON_VERSION=2 > > > > SAGE_ROOT=/usr/local/sage-8.9 > > > > SAGE_SHARE=/usr/local/sage-8.9/local/share > > > > SAGE_SPKG_INST=/usr/local/sage-8.9/local/var/lib/sage/installed > > > > SAGE_SRC=/usr/local/sage-8.9/src > > > > SAGE_VERSION=8.9 > > > > SELINUX_LEVEL_REQUESTED= > > > > SELINUX_ROLE_REQUESTED= > > > > SELINUX_USE_CURRENT_RANGE= > > > > SHELL=/bin/bash > > > > SHLVL=4 > > > > SSH_CLIENT=130.63.254.6 61734 2029 > > > > SSH_CONNECTION=130.63.254.6 61734 130.63.76.137 2029 > > > > SSH_TTY=/dev/pts/0 > > > > TERM=xterm-256color > > > > USER=zabrocki > > > > WEBWORK_ROOT=/opt/webwork/webwork2 > > > > *********************************************** > > > > make[1]: Entering directory `/usr/local/sage-8.9/build/make' > > > > sage-spkg-uninstall pkgconf '/usr/local/sage-8.9/local' > > > > Uninstalling existing 'pkgconf' > > > > Running post-uninstall script for 'pkgconf' > > > > Removing stamp file > '/usr/local/sage-8.9/local/var/lib/sage/installed/pkgconf-0.9.7.p2' > > > > make[1]: Leaving directory `/usr/local/sage-8.9/build/make' > > > > > > real 0m0.149s > > > > user 0m0.091s > > > > sys 0m0.046s > > > > Sage build/upgrade complete! > > > > [zabrocki@algebra sage-8.9]$ ./configure > > > > checking for a BSD-compatible install... /usr/bin/install -c > > > > checking whether build environment is sane... yes > > > > checking for a thread-safe mkdir -p... /bin/mkdir -p > > > > checking for gawk... gawk > > > > checking whether make sets $(MAKE)... yes > > > > checking whether make supports nested variables... yes > > > > checking whether to enable maintainer-specific portions of Makefiles... > yes > > > > checking for root user... no > > > > checking build system type... x86_64-pc-linux-gnu > > > > checking host system type... x86_64-pc-linux-gnu > > > > checking for a sed that does not truncate output... /bin/sed > > > > checking for ar... yes > > > > checking for m4... yes > > > > checking for pkg-config... /usr/bin/pkg-config > > > > checking pkg-config is at least version 0.9.0... yes > > > > checking for ranlib... yes > > > > checking for strip... yes > > > > checking for GNU or BSD tar... /bin/tar > > > > checking for GNU make... /usr/bin/make > > > > checking for latex... yes > > > > checking for perl... /usr/bin/perl > > > > checking for Perl version 5.8.0 or later... yes > > > > checking for gcc... gcc > > > > checking whether the C compiler works... yes > > > > checking for C compiler default output file name... a.out > > > > checking for suffix of executables... > > > > checking whether we are cross compiling... no > > > > checking for suffix of object files... o > > > > checking whether we are using the GNU C compiler... yes > > > > checking whether gcc accepts -g... yes > > > > checking for gcc option to accept ISO C89... none needed > > > > checking whether gcc understands -c and -o together... yes > > > > checking whether make supports the include directive... yes (GNU style) > > > > checking dependency style of gcc... none > > > > checking how to run the C preprocessor... gcc -E > > > > checking for g++... g++ > > > > checking whether we are using the GNU C++ compiler... yes > > > > checking whether g++ accepts -g... yes > > > > checking dependency style of g++... none > > > > checking for gfortran... gfortran > > > > checking whether we are using the GNU Fortran compiler... yes > > > > checking whether gfortran accepts -g... yes > > > > checking for gcc... gcc > > > > checking whether we are using the GNU Objective C compiler... no > > > > checking whether gcc accepts -g... no > > > > checking dependency style of gcc... none > > > > checking for g++... g++ > > > > checking whether we are using the GNU Objective C++ compiler... no > > > > checking whether g++ accepts -g... no > > > > checking dependency style of g++... none > > > > checking how to run the C++ preprocessor... g++ -E > > > > checking for grep that handles long lines and -e... /bin/grep > > > > checking for egrep... /bin/grep -E > > > > checking for ANSI C header files... yes > > > > checking for sys/types.h... yes > > > > checking for sys/stat.h... yes > > > > checking for stdlib.h... yes > > > > checking for string.h... yes > > > > checking for memory.h... yes > > > > checking for strings.h... yes > > > > checking for inttypes.h... yes > > > > checking for stdint.h... yes > > > > checking for unistd.h... yes > > > > checking complex.h usability... yes > > > > checking complex.h presence... yes > > > > checking for complex.h... yes > > > > checking for sqrt in -lm... yes > > > > checking Python version to install... 2 > > > > checking BLAS library... openblas > > > > configure: === checking whether to install the gcc SPKG === > > > > checking for the location of crti.o... > /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 > > > > configure: === checking whether to install the mpir SPKG === > > > > using mpir SPKG (via --with-mp=mpir) > > > > configure: === checking whether to install the gmp SPKG === > > > > configure: === checking whether to install the mpfr SPKG === > > > > using Sage's mpfr SPKG > > > > configure: === checking whether to install the ntl SPKG === > > > > using Sage's ntl SPKG > > > > configure: === checking whether to install the flint SPKG === > > > > using Sage's flint SPKG > > > > configure: === checking whether to install the arb SPKG === > > > > configure: === checking whether to install the bzip2 SPKG === > > > > checking bzlib.h usability... yes > > > > checking bzlib.h presence... yes > > > > checking for bzlib.h... yes > > > > checking for library containing BZ2_bzCompress... -lbz2 > > > > checking for break... no > > > > configure: === checking whether to install the cmake SPKG === > > > > checking for cmake >= 3.4... > > > > configure: === checking whether to install the curl SPKG === > > > > configure: === checking whether to install the ncurses SPKG === > > > > checking for NCURSES... no > > > > checking ncurses.h usability... yes > > > > checking ncurses.h presence... yes > > > > checking for ncurses.h... yes > > > > checking for library containing wresize... -lncurses > > > > configure: === checking whether to install the readline SPKG === > > > > checking Installing ncurses? ... No. > > > > checking for READLINE... no > > > > checking readline/readline.h usability... yes > > > > checking readline/readline.h presence... yes > > > > checking for readline/readline.h... yes > > > > checking for library containing rl_bind_keyseq... -lreadline > > > > configure: === checking whether to install the pari SPKG === > > > > using Sage's pari SPKG > > > > configure: === checking whether to install the eclib SPKG === > > > > configure: === checking whether to install the ecm SPKG === > > > > configure: === checking whether to install the zlib SPKG === > > > > configure: === checking whether to install the libpng SPKG === > > > > configure: === checking whether to install the freetype SPKG === > > > > checking Installing libpng? ... yes; install freetype as well > > > > configure: === checking whether to install the gf2x SPKG === > > > > checking for Fortran flag needed to accept free-form source... > -ffree-form > > > > configure: === checking whether to install the gfortran SPKG === > > > > configure: === checking whether to install the git SPKG === > > > > checking for git... /usr/bin/git > > > > configure: === checking whether to install the givaro SPKG === > > > > configure: === checking whether to install the gp2c SPKG === > > > > checking installing pari? ... yes; install gp2c as well > > > > configure: pari.cfg is $SAGE_LOCAL/lib/pari/pari.cfg > > > > using Sage's gp2c SPKG > > > > checking for ld used by gcc... /usr/bin/ld > > > > checking if the linker (/usr/bin/ld) is GNU ld... yes > > > > checking for shared library run path origin... done > > > > checking for iconv... yes > > > > checking for working iconv... yes > > > > checking for iconv declaration... > > > > extern size_t iconv (iconv_t cd, char * *inbuf, size_t > *inbytesleft, char * *outbuf, size_t *outbytesleft); > > > > configure: === checking whether to install the iconv SPKG === > > > > configure: === checking whether to install the isl SPKG === > > > > checking installing gmp/mpir? ... yes; install isl as well > > > > configure: === checking whether to install the lcalc SPKG === > > > > configure: === checking whether to install the libffi SPKG === > > > > checking for LIBFFI... yes > > > > configure: === checking whether to install the libgd SPKG === > > > > configure: === checking whether to install the lrcalc SPKG === > > > > configure: === checking whether to install the m4ri SPKG === > > > > configure: === checking whether to install the m4rie SPKG === > > > > configure: === checking whether to install the mpc SPKG === > > > > using Sage's mpc SPKG > > > > configure: === checking whether to install the mpfi SPKG === > > > > configure: === checking whether to install the ninja_build SPKG === > > > > checking for ninja >= 1.7.2... > > > > configure: === checking whether to install the pari_elldata SPKG === > > > > checking installing pari? ... yes; install pari_elldata as well > > > > configure: === checking whether to install the pari_galdata SPKG === > > > > configure: === checking whether to install the pari_galpol SPKG === > > > > checking installing pari? ... yes; install pari_galpol as well > > > > configure: === checking whether to install the pari_nftables SPKG === > > > > checking installing pari? ... yes; install pari_nftables as well > > > > configure: === checking whether to install the pari_seadata SPKG === > > > > checking installing pari? ... yes; install pari_seadata as well > > > > configure: === checking whether to install the pari_seadata_small SPKG > === > > > > configure: === checking whether to install the patch SPKG === > > > > configure: === checking whether to install the pcre SPKG === > > > > configure: === checking whether to install the perl_term_readline_gnu > SPKG === > > > > checking for perl module Term::ReadLine... ok > > > > checking Term::ReadLine module...... non-GNU > > > > configure: === checking whether to install the pkgconf SPKG === > > > > checking for pkg-config >= 0.29... > > > > installing pkgconf spkg > > > > configure: === checking whether to install the rw SPKG === > > > > configure: === checking whether to install the symmetrica SPKG === > > > > configure: === checking whether to install the xz SPKG === > > > > configure: === checking whether to install the yasm SPKG === > > > > configure: === checking whether to install the zeromq SPKG === > > > > configure: === checking whether to install the libsemigroups SPKG === > > > > checking for LIBSEMIGROUPS... no > > > > checking SPKGs to install... > > > > 4ti2-1.6.7.p0 > > > > alabaster-0.7.12 > > > > appnope-0.1.0.p0 > > > > arb-2.16.0.p0 > > > > atlas-3.10.2.p3 > > > > autotools-20141105.p0 > > > > awali-1.0.2-190218 > > > > babel-2.6.0 > > > > backports_abc-0.5 > > > > backports_functools_lru_cache-1.5 > > > > backports_shutil_get_terminal_size-1.0.0.p1 > > > > backports_ssl_match_hostname-3.5.0.1.p0 > > > > barvinok-0.41.1 > > > > benzene-20130630 > > > > bleach-3.1.0 > > > > bliss-0.73+debian-1+sage-2016-08-02.p0 > > > > boost-1_66_0 > > > > boost_cropped-1.66.0.p0 > > > > brial-1.2.5 > > > > buckygen-1.0 > > > > bzip2-1.0.6-20150304.p0 will not be installed (configure check) > > > > cbc-2.9.4.p0 > > > > ccache-3.3.4 > > > > cddlib-0.94j > > > > certifi-2019.3.9 > > > > cliquer-1.21.p4 > > > > cmake-3.11.0 > > > > cocoalib-0.99564 > > > > combinatorial_designs-20140630.p0 > > > > compilerwrapper-1.2 > > > > configparser-3.7.4 > > > > configure-2ab843c20b9601e9efb540e4a76624a8c29604eb > > > > conway_polynomials-0.5 > > > > coxeter3-8ac9c71723c8ca57a836d6381aed125261e44e9e > > > > cryptominisat-5.6.8 > > > > csdp-6.2.p0 > > > > curl-7.62.0.p0 > > > > cvxopt-1.1.8.p2 > > > > cycler-0.10.0.p0 > > > > cypari-2.1.1 > > > > cysignals-1.10.2 > > > > cython-0.29.12.p0 > > > > d3js-3.4.8 > > > > database_cremona_ellcurve-20161017 > > > > database_jones_numfield-4 > > > > database_kohel-20160724 > > > > database_mutation_class-1.0 > > > > database_odlyzko_zeta-20061209 > > > > database_stein_watkins-20110713 > > > > database_stein_watkins_mini-20070827 > > > > database_symbolic_data-20070206 > > > > dateutil-2.5.3 > > > > decorator-4.4.0 > > > > deformation-d05941b.p0 > > > > defusedxml-0.6.0 > > > > docutils-0.14 > > > > dot2tex-2.11.3.p0 > > > > e_antic-0.1.3 > > > > ecl-16.1.2.p5 > > > > eclib-20190226 > > > > ecm-7.0.4.p1 > > > > elliptic_curves-0.8.1 > > > > entrypoints-0.3 > > > > enum34-1.1.6 > > > > fflas_ffpack-2.4.3 > > > > flask-0.10.1.p0 > > > > flask_autoindex-0.6.p0 > > > > flask_babel-0.9.p0 > > > > flask_oldsessions-0.10.p0 > > > > flask_openid-1.2.5.p0 > > > > flask_silk-0.2.p0 > > > > flint-2.5.2.p4 > > > > flintqs-1.0.p0 > > > > fplll-5.2.1 > > > > fpylll-0.4.1dev > > > > freetype-2.9.1 > > > > fricas-1.3.5 > > > > frobby-0.9.0.p2 > > > > functools32-3.2.3-2.p0 > > > > future-0.17.1 > > > > gambit-15.1.1.p0 > > > > gap-4.10.2.p1 > > > > gap3-04jul17 > > > > gap_jupyter-0.9 > > > > gap_packages-4.10.2.p1 > > > > gc-7.6.4.p0 > > > > gcc-7.4.0 > > > > gdb-8.2 > > > > gf2x-1.2.p0 > > > > gfan-0.6.2.p1 > > > > gfortran-7.4.0 will not be installed (configure check) > > > > giac-1.5.0.63.p0 > > > > giacpy_sage-0.6.7 > > > > git-2.11.0 will not be installed (configure check) > > > > git_trac-20160625.p0 > > > > givaro-4.1.1 > > > > glpk-4.63.p2 > > > > glucose-4.1 > > > > gmp-6.1.2 will not be installed (configure check) > > > > gmpy2-2.1.0b1 > > > > gp2c-0.0.10.p0 > > > > graphs-20161026.p0 > > > > gsl-2.5 > > > > html5lib-1.0.1 > > > > iconv-1.15 will not be installed (configure check) > > > > igraph-0.7.1999.p0 > > > > imagesize-1.1.0 > > > > iml-1.0.4p1.p2 > > > > ipaddress-1.0.22 > > > > ipykernel-4.8.2 > > > > ipython-5.8.0 > > > > ipython_genutils-0.2.0 > > > > ipywidgets-7.4.2 > > > > isl-0.20 > > > > itsdangerous-1.1.0 > > > > jinja2-2.10 > > > > jmol-14.29.52 > > > > jsonschema-2.6.0 > > > > jupymake-0.9 > > > > jupyter_client-5.2.4 > > > > jupyter_core-4.4.0 > > > > kenzo-1.1.7-r3 > > > > kiwisolver-1.0.1 > > > > latte_int-1.7.5.p0 > > > > lcalc-1.23.p19 > > > > libatomic_ops-7.6.2 > > > > libbraiding-1.0 > > > > libffi-3.2.1 will not be installed (configure check) > > > > libgd-2.1.1.1.p1 > > > > libhomfly-1.02r4 > > > > libogg-1.3.1.p0 > > > > libpng-1.6.29.p1 > > > > libsemigroups-0.6.7 > > > > libtheora-1.1.1 > > > > lidia-2.3.0+latte-patches-2019-05-02 > > > > lie-2.2.2 > > > > linbox-1.6.3 > > > > lrcalc-1.2.p1 > > > > lrslib-062+autotools-2017-03-03.p1 > > > > m4ri-20140914.p0 > > > > m4rie-20150908.p0 > > > > markupsafe-1.1.0 > > > > mathjax-2.7.4.p0 > > > > matplotlib-2.2.4.p0 > > > > maxima-5.42.2 > > > > mcqd-1.0 > > > > meataxe-1.0.p0 > > > > mistune-0.8.4 > > > > modular_decomposition-20100607 > > > > mpc-1.1.0 > > > > mpfi-1.5.2 > > > > mpfr-4.0.1.p0 > > > > mpfrcx-0.5 > > > > mpir-3.0.0-644faf502c56f97d9accd301965fc57d6ec70868.p0 > > > > mpmath-1.1.0 > > > > nauty-26r1.p0 > > > > nbconvert-5.4.0 > > > > nbformat-4.4.0 > > > > ncurses-6.0.p0 will not be installed (configure check) > > > > networkx-2.2 > > > > ninja_build-1.8.2 > > > > normaliz-3.7.2 > > > > nose-1.3.7 > > > > notebook-5.7.6.p0 > > > > notedown-1.5.1 > > > > ntl-11.3.2 > > > > numpy-1.16.1 > > > > openblas-0.3.6.p0 > > > > openssl-1.1.1b > > > > ore_algebra-0.3 > > > > p_group_cohomology-3.2 > > > > packaging-18.0 > > > > palp-2.1.p2 > > > > pandoc_attributes-8bc82f6d > > > > pandocfilters-1.4.2 > > > > pari-2.11.1.p2 > > > > pari_elldata-20161017 > > > > pari_galdata-20080411.p0 > > > > pari_galpol-20180625 > > > > pari_jupyter-1.3.2 > > > > pari_nftables-20080929 > > > > pari_seadata-20090618 > > > > pari_seadata_small-20090618.p0 > > > > patch-2.7.5 > > > > pathlib2-2.3.3 > > > > pathpy-7.1.p0 > > > > pcre-8.40.p2 > > > > perl_term_readline_gnu-1.35 > > > > pexpect-4.6.0.p0 > > > > pickleshare-0.7.5 > > > > pillow-5.3.0.p0 > > > > pip-18.1 > > > > pkgconf-0.9.7.p2 > > > > pkgconfig-1.4.0 > > > > planarity-3.0.0.5.p0 > > > > plantri-4.5 > > > > polylib-5.22.5 > > > > polymake-3.4 > > > > polytopes_db-20170220.p0 > > > > ppl-1.2.p1 > > > > pplpy-0.8.4 > > > > primecount-4.7 > > > > prometheus_client-0.5.0 > > > > prompt_toolkit-1.0.15 > > > > psutil-5.2.0.p2 > > > > ptyprocess-0.5.1.p0 > > > > pycosat-0.6.3 > > > > pycygwin-0.1 > > > > pygments-2.3.1.p0 > > > > pynac-0.7.26 > > > > pynormaliz-2.7 > > > > pyparsing-2.3.0 > > > > pysingular-0.9.5 > > > > python2-2.7.15.p1 > > > > python3-3.7.3.p1 > > > > python_igraph-0.7.1999 > > > > python_openid-2.2.5.p0 > > > > pytz-2018.7 > > > > pyx-0.12.1.p0 > > > > pyzmq-18.1.0 > > > > qepcad-B.1.71 > > > > qhull-2015-src-7.2.0.p1 > > > > r-3.6.1 > > > > ratpoints-2.1.3.p5 > > > > readline-6.3.008.p0 will not be installed (configure check) > > > > requests-2.13.0 > > > > rpy2-2.8.2.p1 > > > > rst2ipynb-0.2.2.p0 > > > > rubiks-20070912.p21 > > > > rw-0.7.p0 > > > > saclib-2.2.7 > > > > sagenb-1.1.2 > > > > sagenb_export-3.2 > > > > sagetex-3.3 > > > > scandir-1.9.0 > > > > scipoptsuite-5.0.1 > > > > scipy-1.2.0 > > > > scons-1.2.0 > > > > send2trash-1.5.0 > > > > setuptools-40.6.3 > > > > setuptools_scm-3.1.0 > > > > simplegeneric-0.8.1.p0 > > > > singledispatch-3.4.0.3.p0 > > > > singular-4.1.1p2.p0 > > > > singular_jupyter-0.9.7 > > > > sip-4.18 > > > > sirocco-2.0.p0 > > > > six-1.12.0 > > > > snowballstemmer-1.2.1.p0 > > > > speaklater-1.3.p0 > > > > sphinx-1.8.5.p0 > > > > sphinxcontrib_websupport-1.1.0 > > > > sqlite-3270100 > > > > subprocess32-3.5.3 > > > > surf-1.0.6-gcc6 > > > > symmetrica-2.0.p11 > > > > sympow-1.018.1.p13 > > > > sympy-1.4.p0 > > > > tachyon-0.98.9.p7 > > > > tdlib-0.3.1.p0 > > > > termcap-1.3.1.p3 > > > > terminado-0.8.1 > > > > testpath-0.4.2 > > > > thebe-9624e0a0.p0 > > > > threejs-r105 > > > > tides-2.0.p0 > > > > topcom-0.17.7 > > > > tornado-4.5.2 > > > > traitlets-4.3.2 > > > > twisted-16.3.0.p0 > > > > typing-3.6.6 > > > > valgrind-3.14.0 > > > > vcversioner-2.16.0.0.p0 > > > > wcwidth-0.1.7.p0 > > > > webencodings-0.5.1 > > > > werkzeug-0.14.1 > > > > widgetsnbextension-3.4.2 > > > > xz-5.2.2.p0 > > > > yasm-1.3.0.p0 > > > > zeromq-4.2.5 > > > > zlib-1.2.11.p0 > > > > zn_poly-0.9.1.p0 > > > > zope_interface-4.6.0 > > > > checking that generated files are newer than configure... done > > > > configure: creating ./config.status > > > > config.status: creating build/make/Makefile-auto > > > > config.status: creating build/make/Makefile > > > > config.status: creating src/Makefile > > > > config.status: creating src/bin/sage-env-config > > > > config.status: executing depfiles commands > > > > config.status: executing mkdirs commands > > > > config.status: creating directory /usr/local/sage-8.9/logs/pkgs > > > > config.status: creating directory local > > > > config.status: creating directory local/bin > > > > config.status: creating directory local/etc > > > > config.status: creating directory local/include > > > > config.status: creating directory local/lib > > > > config.status: creating directory local/share > > > > config.status: creating directory local/var/lib/sage/installed > > > > [zabrocki@algebra sage-8.9]$ ./sage -f matplotlib > > > > make build/make/Makefile --stop > > > > make[1]: Entering directory `/usr/local/sage-8.9' > > > > make[1]: `build/make/Makefile' is up to date. > > > > make[1]: Leaving directory `/usr/local/sage-8.9' > > > > build/bin/sage-logger \ > > > > "cd build/make && ./install 'matplotlib-clean'" logs/install.log > > > > make[1]: Entering directory `/usr/local/sage-8.9/build/make' > > > > make[1]: Leaving directory `/usr/local/sage-8.9/build/make' > > > > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: *** > > > > } > > > > BASH_FUNC_module()=() { eval `/usr/bin/modulecmd bash $*` > > > > _=/bin/env > > > > CONFIGURED_CC=gcc > > > > CONFIGURED_CXX=g++ > > > > CONFIGURED_FC=gfortran > > > > CONFIGURED_OBJC=gcc > > > > CONFIGURED_OBJCXX=g++ > > > > CVS_RSH=ssh > > > > G_BROKEN_FILENAMES=1 > > > > HISTCONTROL=ignoredups > > > > HISTSIZE=1000 > > > > HOME=/home/zabrocki > > > > HOSTNAME=algebra.math.yorku.ca > > > > LANG=en_US.UTF-8 > > > > LESSOPEN=||/usr/bin/lesspipe.sh %s > > > > LOADEDMODULES= > > > > LOGNAME=zabrocki > > > > > LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45: > > > > > > MAIL=/var/spool/mail/zabrocki > > > > MAKEFLAGS= V=1 > > > > MAKELEVEL=1 > > > > MAKE=make > > > > MFLAGS= > > > > MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles > > > > MODULESHOME=/usr/share/Modules > > > > > PATH=/usr/local/sage-8.9/build/bin:/usr/local/sage-8.9/src/bin:/usr/local/sage-8.9/local/bin:.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin > > > > > > PG_ROOT=/opt/webwork/pg > > > > PWD=/usr/local/sage-8.9/build/make > > > > PYTHONPATH=/usr/local/sage-8.9/local > > > > QTDIR=/usr/lib64/qt-3.3 > > > > QTINC=/usr/lib64/qt-3.3/include > > > > QTLIB=/usr/lib64/qt-3.3/lib > > > > SAGE_ARB_LIBRARY=arb > > > > SAGE_BROWSER=firefox > > > > SAGE_CONFIGURE_FLINT=--with-flint=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_GMP=--with-gmp=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_MPC=--with-mpc=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_MPFR=--with-mpfr=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_NTL=--with-ntl=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_PARI=--with-pari=/usr/local/sage-8.9/local > > > > SAGE_CRTI_DIR=/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 > > > > SAGE_EXTCODE=/usr/local/sage-8.9/local/share/sage/ext > > > > SAGE_FLINT_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_FREETYPE_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_GMP_INCLUDE=/usr/local/sage-8.9/local/include > > > > SAGE_GMP_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_LOCAL=/usr/local/sage-8.9/local > > > > SAGE_LOGS=/usr/local/sage-8.9/logs/pkgs > > > > SAGE_MPC_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_MPFR_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_NTL_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_ORIG_PATH_SET=True > > > > > SAGE_ORIG_PATH=.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin > > > > > > SAGE_PARI_CFG=/usr/local/sage-8.9/local/lib/pari/pari.cfg > > > > SAGE_PARI_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_PKG_CONFIG_PATH= > > > > SAGE_PYTHON_VERSION=2 > > > > SAGE_ROOT=/usr/local/sage-8.9 > > > > SAGE_SHARE=/usr/local/sage-8.9/local/share > > > > SAGE_SPKG_INST=/usr/local/sage-8.9/local/var/lib/sage/installed > > > > SAGE_SRC=/usr/local/sage-8.9/src > > > > SAGE_VERSION=8.9 > > > > SELINUX_LEVEL_REQUESTED= > > > > SELINUX_ROLE_REQUESTED= > > > > SELINUX_USE_CURRENT_RANGE= > > > > SHELL=/bin/bash > > > > SHLVL=5 > > > > SSH_CLIENT=130.63.254.6 61734 2029 > > > > SSH_CONNECTION=130.63.254.6 61734 130.63.76.137 2029 > > > > SSH_TTY=/dev/pts/0 > > > > TERM=xterm-256color > > > > USER=zabrocki > > > > WEBWORK_ROOT=/opt/webwork/webwork2 > > > > *********************************************** > > > > make[1]: Entering directory `/usr/local/sage-8.9/build/make' > > > > sage-spkg-uninstall matplotlib '/usr/local/sage-8.9/local' > > > > Package 'matplotlib' is currently not installed > > > > No legacy uninstaller found for 'matplotlib'; nothing to do > > > > make[1]: Leaving directory `/usr/local/sage-8.9/build/make' > > > > > > real 0m0.080s > > > > user 0m0.064s > > > > sys 0m0.015s > > > > Sage build/upgrade complete! > > > > make build/make/Makefile --stop > > > > make[1]: Entering directory `/usr/local/sage-8.9' > > > > make[1]: `build/make/Makefile' is up to date. > > > > make[1]: Leaving directory `/usr/local/sage-8.9' > > > > build/bin/sage-logger \ > > > > "cd build/make && ./install 'all-toolchain'" logs/install.log > > > > make[1]: Entering directory `/usr/local/sage-8.9/build/make' > > > > make[1]: Leaving directory `/usr/local/sage-8.9/build/make' > > > > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: *** > > > > } > > > > BASH_FUNC_module()=() { eval `/usr/bin/modulecmd bash $*` > > > > _=/bin/env > > > > CONFIGURED_CC=gcc > > > > CONFIGURED_CXX=g++ > > > > CONFIGURED_FC=gfortran > > > > CONFIGURED_OBJC=gcc > > > > CONFIGURED_OBJCXX=g++ > > > > CVS_RSH=ssh > > > > G_BROKEN_FILENAMES=1 > > > > HISTCONTROL=ignoredups > > > > HISTSIZE=1000 > > > > HOME=/home/zabrocki > > > > HOSTNAME=algebra.math.yorku.ca > > > > LANG=en_US.UTF-8 > > > > LESSOPEN=||/usr/bin/lesspipe.sh %s > > > > LOADEDMODULES= > > > > LOGNAME=zabrocki > > > > > 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> > > > > > MAIL=/var/spool/mail/zabrocki > > > > MAKEFLAGS= V=1 > > > > MAKELEVEL=1 > > > > MAKE=make > > > > MFLAGS= > > > > MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles > > > > MODULESHOME=/usr/share/Modules > > > > > PATH=/usr/local/sage-8.9/build/bin:/usr/local/sage-8.9/src/bin:/usr/local/sage-8.9/local/bin:.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin > > > > > > PG_ROOT=/opt/webwork/pg > > > > PWD=/usr/local/sage-8.9/build/make > > > > PYTHONPATH=/usr/local/sage-8.9/local > > > > QTDIR=/usr/lib64/qt-3.3 > > > > QTINC=/usr/lib64/qt-3.3/include > > > > QTLIB=/usr/lib64/qt-3.3/lib > > > > SAGE_ARB_LIBRARY=arb > > > > SAGE_BROWSER=firefox > > > > SAGE_CONFIGURE_FLINT=--with-flint=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_GMP=--with-gmp=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_MPC=--with-mpc=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_MPFR=--with-mpfr=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_NTL=--with-ntl=/usr/local/sage-8.9/local > > > > SAGE_CONFIGURE_PARI=--with-pari=/usr/local/sage-8.9/local > > > > SAGE_CRTI_DIR=/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 > > > > SAGE_EXTCODE=/usr/local/sage-8.9/local/share/sage/ext > > > > SAGE_FLINT_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_FREETYPE_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_GMP_INCLUDE=/usr/local/sage-8.9/local/include > > > > SAGE_GMP_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_LOCAL=/usr/local/sage-8.9/local > > > > SAGE_LOGS=/usr/local/sage-8.9/logs/pkgs > > > > SAGE_MPC_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_MPFR_PREFIX=/usr/local/sage-8.9/local > > > > SAGE_N... -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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