Hmmm. This is better because matplotlib is compiling, but R is not
compiling because of an old version of bzip2.
I'm trying:
./configure --without-system-bzip2
and then make.
-Mike
On Tuesday, 12 November 2019 22:35:57 UTC-5, Mike Zabrocki wrote:
>
> Hi Dima,
>
> It didn't fix the problem, but that may be because it didn't start with a
> clean build. I'll let it run overnight and let you know what I get
> tomorrow.
>
> -Mike
>
> On Tuesday, 12 November 2019 14:04:03 UTC-5, Dima Pasechnik wrote:
>
> I believe that running
>
> ./configure --without-system-zlib
>
> followed by
>
> make
>
> should allow all these errors to go away. Please try this.
>
> On Tue, Nov 12, 2019 at 6:51 PM Mike Zabrocki <mike.z...@gmail.com>
> wrote:
> >
> > Clearly I missed the typo. Here is the output of the 4 commands that
> are failing now (but this is after the "./configure --without-system-zlib")
> > and I am attaching the 4 log files and the config.log file.
> >
> > [zabrocki@algebra sage-8.9]$ make freetype-clean
> >
> > make build/make/Makefile --stop
> >
> > make[1]: Entering directory `/usr/local/sage-8.9'
> >
> > make[1]: `build/make/Makefile' is up to date.
> >
> > make[1]: Leaving directory `/usr/local/sage-8.9'
> >
> > build/bin/sage-logger \
> >
> > "cd build/make && ./install 'freetype-clean'" logs/install.log
> >
> > make[1]: Entering directory `/usr/local/sage-8.9/build/make'
> >
> > make[1]: Leaving directory `/usr/local/sage-8.9/build/make'
> >
> > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***
> >
> > }
> >
> > BASH_FUNC_module()=() { eval `/usr/bin/modulecmd bash $*`
> >
> > _=/bin/env
> >
> > CONFIGURED_CC=gcc
> >
> > CONFIGURED_CXX=g++
> >
> > CONFIGURED_FC=gfortran
> >
> > CONFIGURED_OBJC=gcc
> >
> > CONFIGURED_OBJCXX=g++
> >
> > CVS_RSH=ssh
> >
> > G_BROKEN_FILENAMES=1
> >
> > HISTCONTROL=ignoredups
> >
> > HISTSIZE=1000
> >
> > HOME=/home/zabrocki
> >
> > HOSTNAME=algebra.math.yorku.ca
> >
> > LANG=en_US.UTF-8
> >
> > LESSOPEN=||/usr/bin/lesspipe.sh %s
> >
> > LOADEDMODULES=
> >
> > LOGNAME=zabrocki
> >
> >
> LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
>
>
> >
> > MAIL=/var/spool/mail/zabrocki
> >
> > MAKEFLAGS= V=1
> >
> > MAKELEVEL=1
> >
> > MAKE=make
> >
> > MFLAGS=
> >
> > MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles
> >
> > MODULESHOME=/usr/share/Modules
> >
> >
> PATH=/usr/local/sage-8.9/build/bin:/usr/local/sage-8.9/src/bin:/usr/local/sage-8.9/local/bin:.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin
>
>
> >
> > PG_ROOT=/opt/webwork/pg
> >
> > PWD=/usr/local/sage-8.9/build/make
> >
> > PYTHONPATH=/usr/local/sage-8.9/local
> >
> > QTDIR=/usr/lib64/qt-3.3
> >
> > QTINC=/usr/lib64/qt-3.3/include
> >
> > QTLIB=/usr/lib64/qt-3.3/lib
> >
> > SAGE_ARB_LIBRARY=arb
> >
> > SAGE_BROWSER=firefox
> >
> > SAGE_CONFIGURE_FLINT=--with-flint=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_GMP=--with-gmp=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_MPC=--with-mpc=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_MPFR=--with-mpfr=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_NTL=--with-ntl=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_PARI=--with-pari=/usr/local/sage-8.9/local
> >
> > SAGE_CRTI_DIR=/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
> >
> > SAGE_EXTCODE=/usr/local/sage-8.9/local/share/sage/ext
> >
> > SAGE_FLINT_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_FREETYPE_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_GMP_INCLUDE=/usr/local/sage-8.9/local/include
> >
> > SAGE_GMP_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_LOCAL=/usr/local/sage-8.9/local
> >
> > SAGE_LOGS=/usr/local/sage-8.9/logs/pkgs
> >
> > SAGE_MPC_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_MPFR_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_NTL_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_ORIG_PATH_SET=True
> >
> >
> SAGE_ORIG_PATH=.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin
>
>
> >
> > SAGE_PARI_CFG=/usr/local/sage-8.9/local/lib/pari/pari.cfg
> >
> > SAGE_PARI_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_PKG_CONFIG_PATH=
> >
> > SAGE_PYTHON_VERSION=2
> >
> > SAGE_ROOT=/usr/local/sage-8.9
> >
> > SAGE_SHARE=/usr/local/sage-8.9/local/share
> >
> > SAGE_SPKG_INST=/usr/local/sage-8.9/local/var/lib/sage/installed
> >
> > SAGE_SRC=/usr/local/sage-8.9/src
> >
> > SAGE_VERSION=8.9
> >
> > SELINUX_LEVEL_REQUESTED=
> >
> > SELINUX_ROLE_REQUESTED=
> >
> > SELINUX_USE_CURRENT_RANGE=
> >
> > SHELL=/bin/bash
> >
> > SHLVL=4
> >
> > SSH_CLIENT=130.63.254.6 61734 2029
> >
> > SSH_CONNECTION=130.63.254.6 61734 130.63.76.137 2029
> >
> > SSH_TTY=/dev/pts/0
> >
> > TERM=xterm-256color
> >
> > USER=zabrocki
> >
> > WEBWORK_ROOT=/opt/webwork/webwork2
> >
> > ***********************************************
> >
> > make[1]: Entering directory `/usr/local/sage-8.9/build/make'
> >
> > sage-spkg-uninstall freetype '/usr/local/sage-8.9/local'
> >
> > Uninstalling existing 'freetype'
> >
> > Removing stamp file
> '/usr/local/sage-8.9/local/var/lib/sage/installed/freetype-2.9.1'
> >
> > make[1]: Leaving directory `/usr/local/sage-8.9/build/make'
> >
> >
> > real 0m0.095s
> >
> > user 0m0.073s
> >
> > sys 0m0.020s
> >
> > Sage build/upgrade complete!
> >
> > [zabrocki@algebra sage-8.9]$ make pkgconf-clean
> >
> > make build/make/Makefile --stop
> >
> > make[1]: Entering directory `/usr/local/sage-8.9'
> >
> > make[1]: `build/make/Makefile' is up to date.
> >
> > make[1]: Leaving directory `/usr/local/sage-8.9'
> >
> > build/bin/sage-logger \
> >
> > "cd build/make && ./install 'pkgconf-clean'" logs/install.log
> >
> > make[1]: Entering directory `/usr/local/sage-8.9/build/make'
> >
> > make[1]: Leaving directory `/usr/local/sage-8.9/build/make'
> >
> > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***
> >
> > }
> >
> > BASH_FUNC_module()=() { eval `/usr/bin/modulecmd bash $*`
> >
> > _=/bin/env
> >
> > CONFIGURED_CC=gcc
> >
> > CONFIGURED_CXX=g++
> >
> > CONFIGURED_FC=gfortran
> >
> > CONFIGURED_OBJC=gcc
> >
> > CONFIGURED_OBJCXX=g++
> >
> > CVS_RSH=ssh
> >
> > G_BROKEN_FILENAMES=1
> >
> > HISTCONTROL=ignoredups
> >
> > HISTSIZE=1000
> >
> > HOME=/home/zabrocki
> >
> > HOSTNAME=algebra.math.yorku.ca
> >
> > LANG=en_US.UTF-8
> >
> > LESSOPEN=||/usr/bin/lesspipe.sh %s
> >
> > LOADEDMODULES=
> >
> > LOGNAME=zabrocki
> >
> >
> LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
>
>
> >
> > MAIL=/var/spool/mail/zabrocki
> >
> > MAKEFLAGS= V=1
> >
> > MAKELEVEL=1
> >
> > MAKE=make
> >
> > MFLAGS=
> >
> > MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles
> >
> > MODULESHOME=/usr/share/Modules
> >
> >
> PATH=/usr/local/sage-8.9/build/bin:/usr/local/sage-8.9/src/bin:/usr/local/sage-8.9/local/bin:.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin
>
>
> >
> > PG_ROOT=/opt/webwork/pg
> >
> > PWD=/usr/local/sage-8.9/build/make
> >
> > PYTHONPATH=/usr/local/sage-8.9/local
> >
> > QTDIR=/usr/lib64/qt-3.3
> >
> > QTINC=/usr/lib64/qt-3.3/include
> >
> > QTLIB=/usr/lib64/qt-3.3/lib
> >
> > SAGE_ARB_LIBRARY=arb
> >
> > SAGE_BROWSER=firefox
> >
> > SAGE_CONFIGURE_FLINT=--with-flint=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_GMP=--with-gmp=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_MPC=--with-mpc=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_MPFR=--with-mpfr=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_NTL=--with-ntl=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_PARI=--with-pari=/usr/local/sage-8.9/local
> >
> > SAGE_CRTI_DIR=/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
> >
> > SAGE_EXTCODE=/usr/local/sage-8.9/local/share/sage/ext
> >
> > SAGE_FLINT_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_FREETYPE_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_GMP_INCLUDE=/usr/local/sage-8.9/local/include
> >
> > SAGE_GMP_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_LOCAL=/usr/local/sage-8.9/local
> >
> > SAGE_LOGS=/usr/local/sage-8.9/logs/pkgs
> >
> > SAGE_MPC_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_MPFR_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_NTL_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_ORIG_PATH_SET=True
> >
> >
> SAGE_ORIG_PATH=.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin
>
>
> >
> > SAGE_PARI_CFG=/usr/local/sage-8.9/local/lib/pari/pari.cfg
> >
> > SAGE_PARI_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_PKG_CONFIG_PATH=
> >
> > SAGE_PYTHON_VERSION=2
> >
> > SAGE_ROOT=/usr/local/sage-8.9
> >
> > SAGE_SHARE=/usr/local/sage-8.9/local/share
> >
> > SAGE_SPKG_INST=/usr/local/sage-8.9/local/var/lib/sage/installed
> >
> > SAGE_SRC=/usr/local/sage-8.9/src
> >
> > SAGE_VERSION=8.9
> >
> > SELINUX_LEVEL_REQUESTED=
> >
> > SELINUX_ROLE_REQUESTED=
> >
> > SELINUX_USE_CURRENT_RANGE=
> >
> > SHELL=/bin/bash
> >
> > SHLVL=4
> >
> > SSH_CLIENT=130.63.254.6 61734 2029
> >
> > SSH_CONNECTION=130.63.254.6 61734 130.63.76.137 2029
> >
> > SSH_TTY=/dev/pts/0
> >
> > TERM=xterm-256color
> >
> > USER=zabrocki
> >
> > WEBWORK_ROOT=/opt/webwork/webwork2
> >
> > ***********************************************
> >
> > make[1]: Entering directory `/usr/local/sage-8.9/build/make'
> >
> > sage-spkg-uninstall pkgconf '/usr/local/sage-8.9/local'
> >
> > Uninstalling existing 'pkgconf'
> >
> > Running post-uninstall script for 'pkgconf'
> >
> > Removing stamp file
> '/usr/local/sage-8.9/local/var/lib/sage/installed/pkgconf-0.9.7.p2'
> >
> > make[1]: Leaving directory `/usr/local/sage-8.9/build/make'
> >
> >
> > real 0m0.149s
> >
> > user 0m0.091s
> >
> > sys 0m0.046s
> >
> > Sage build/upgrade complete!
> >
> > [zabrocki@algebra sage-8.9]$ ./configure
> >
> > checking for a BSD-compatible install... /usr/bin/install -c
> >
> > checking whether build environment is sane... yes
> >
> > checking for a thread-safe mkdir -p... /bin/mkdir -p
> >
> > checking for gawk... gawk
> >
> > checking whether make sets $(MAKE)... yes
> >
> > checking whether make supports nested variables... yes
> >
> > checking whether to enable maintainer-specific portions of Makefiles...
> yes
> >
> > checking for root user... no
> >
> > checking build system type... x86_64-pc-linux-gnu
> >
> > checking host system type... x86_64-pc-linux-gnu
> >
> > checking for a sed that does not truncate output... /bin/sed
> >
> > checking for ar... yes
> >
> > checking for m4... yes
> >
> > checking for pkg-config... /usr/bin/pkg-config
> >
> > checking pkg-config is at least version 0.9.0... yes
> >
> > checking for ranlib... yes
> >
> > checking for strip... yes
> >
> > checking for GNU or BSD tar... /bin/tar
> >
> > checking for GNU make... /usr/bin/make
> >
> > checking for latex... yes
> >
> > checking for perl... /usr/bin/perl
> >
> > checking for Perl version 5.8.0 or later... yes
> >
> > checking for gcc... gcc
> >
> > checking whether the C compiler works... yes
> >
> > checking for C compiler default output file name... a.out
> >
> > checking for suffix of executables...
> >
> > checking whether we are cross compiling... no
> >
> > checking for suffix of object files... o
> >
> > checking whether we are using the GNU C compiler... yes
> >
> > checking whether gcc accepts -g... yes
> >
> > checking for gcc option to accept ISO C89... none needed
> >
> > checking whether gcc understands -c and -o together... yes
> >
> > checking whether make supports the include directive... yes (GNU style)
> >
> > checking dependency style of gcc... none
> >
> > checking how to run the C preprocessor... gcc -E
> >
> > checking for g++... g++
> >
> > checking whether we are using the GNU C++ compiler... yes
> >
> > checking whether g++ accepts -g... yes
> >
> > checking dependency style of g++... none
> >
> > checking for gfortran... gfortran
> >
> > checking whether we are using the GNU Fortran compiler... yes
> >
> > checking whether gfortran accepts -g... yes
> >
> > checking for gcc... gcc
> >
> > checking whether we are using the GNU Objective C compiler... no
> >
> > checking whether gcc accepts -g... no
> >
> > checking dependency style of gcc... none
> >
> > checking for g++... g++
> >
> > checking whether we are using the GNU Objective C++ compiler... no
> >
> > checking whether g++ accepts -g... no
> >
> > checking dependency style of g++... none
> >
> > checking how to run the C++ preprocessor... g++ -E
> >
> > checking for grep that handles long lines and -e... /bin/grep
> >
> > checking for egrep... /bin/grep -E
> >
> > checking for ANSI C header files... yes
> >
> > checking for sys/types.h... yes
> >
> > checking for sys/stat.h... yes
> >
> > checking for stdlib.h... yes
> >
> > checking for string.h... yes
> >
> > checking for memory.h... yes
> >
> > checking for strings.h... yes
> >
> > checking for inttypes.h... yes
> >
> > checking for stdint.h... yes
> >
> > checking for unistd.h... yes
> >
> > checking complex.h usability... yes
> >
> > checking complex.h presence... yes
> >
> > checking for complex.h... yes
> >
> > checking for sqrt in -lm... yes
> >
> > checking Python version to install... 2
> >
> > checking BLAS library... openblas
> >
> > configure: === checking whether to install the gcc SPKG ===
> >
> > checking for the location of crti.o...
> /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
> >
> > configure: === checking whether to install the mpir SPKG ===
> >
> > using mpir SPKG (via --with-mp=mpir)
> >
> > configure: === checking whether to install the gmp SPKG ===
> >
> > configure: === checking whether to install the mpfr SPKG ===
> >
> > using Sage's mpfr SPKG
> >
> > configure: === checking whether to install the ntl SPKG ===
> >
> > using Sage's ntl SPKG
> >
> > configure: === checking whether to install the flint SPKG ===
> >
> > using Sage's flint SPKG
> >
> > configure: === checking whether to install the arb SPKG ===
> >
> > configure: === checking whether to install the bzip2 SPKG ===
> >
> > checking bzlib.h usability... yes
> >
> > checking bzlib.h presence... yes
> >
> > checking for bzlib.h... yes
> >
> > checking for library containing BZ2_bzCompress... -lbz2
> >
> > checking for break... no
> >
> > configure: === checking whether to install the cmake SPKG ===
> >
> > checking for cmake >= 3.4...
> >
> > configure: === checking whether to install the curl SPKG ===
> >
> > configure: === checking whether to install the ncurses SPKG ===
> >
> > checking for NCURSES... no
> >
> > checking ncurses.h usability... yes
> >
> > checking ncurses.h presence... yes
> >
> > checking for ncurses.h... yes
> >
> > checking for library containing wresize... -lncurses
> >
> > configure: === checking whether to install the readline SPKG ===
> >
> > checking Installing ncurses? ... No.
> >
> > checking for READLINE... no
> >
> > checking readline/readline.h usability... yes
> >
> > checking readline/readline.h presence... yes
> >
> > checking for readline/readline.h... yes
> >
> > checking for library containing rl_bind_keyseq... -lreadline
> >
> > configure: === checking whether to install the pari SPKG ===
> >
> > using Sage's pari SPKG
> >
> > configure: === checking whether to install the eclib SPKG ===
> >
> > configure: === checking whether to install the ecm SPKG ===
> >
> > configure: === checking whether to install the zlib SPKG ===
> >
> > configure: === checking whether to install the libpng SPKG ===
> >
> > configure: === checking whether to install the freetype SPKG ===
> >
> > checking Installing libpng? ... yes; install freetype as well
> >
> > configure: === checking whether to install the gf2x SPKG ===
> >
> > checking for Fortran flag needed to accept free-form source...
> -ffree-form
> >
> > configure: === checking whether to install the gfortran SPKG ===
> >
> > configure: === checking whether to install the git SPKG ===
> >
> > checking for git... /usr/bin/git
> >
> > configure: === checking whether to install the givaro SPKG ===
> >
> > configure: === checking whether to install the gp2c SPKG ===
> >
> > checking installing pari? ... yes; install gp2c as well
> >
> > configure: pari.cfg is $SAGE_LOCAL/lib/pari/pari.cfg
> >
> > using Sage's gp2c SPKG
> >
> > checking for ld used by gcc... /usr/bin/ld
> >
> > checking if the linker (/usr/bin/ld) is GNU ld... yes
> >
> > checking for shared library run path origin... done
> >
> > checking for iconv... yes
> >
> > checking for working iconv... yes
> >
> > checking for iconv declaration...
> >
> > extern size_t iconv (iconv_t cd, char * *inbuf, size_t
> *inbytesleft, char * *outbuf, size_t *outbytesleft);
> >
> > configure: === checking whether to install the iconv SPKG ===
> >
> > configure: === checking whether to install the isl SPKG ===
> >
> > checking installing gmp/mpir? ... yes; install isl as well
> >
> > configure: === checking whether to install the lcalc SPKG ===
> >
> > configure: === checking whether to install the libffi SPKG ===
> >
> > checking for LIBFFI... yes
> >
> > configure: === checking whether to install the libgd SPKG ===
> >
> > configure: === checking whether to install the lrcalc SPKG ===
> >
> > configure: === checking whether to install the m4ri SPKG ===
> >
> > configure: === checking whether to install the m4rie SPKG ===
> >
> > configure: === checking whether to install the mpc SPKG ===
> >
> > using Sage's mpc SPKG
> >
> > configure: === checking whether to install the mpfi SPKG ===
> >
> > configure: === checking whether to install the ninja_build SPKG ===
> >
> > checking for ninja >= 1.7.2...
> >
> > configure: === checking whether to install the pari_elldata SPKG ===
> >
> > checking installing pari? ... yes; install pari_elldata as well
> >
> > configure: === checking whether to install the pari_galdata SPKG ===
> >
> > configure: === checking whether to install the pari_galpol SPKG ===
> >
> > checking installing pari? ... yes; install pari_galpol as well
> >
> > configure: === checking whether to install the pari_nftables SPKG ===
> >
> > checking installing pari? ... yes; install pari_nftables as well
> >
> > configure: === checking whether to install the pari_seadata SPKG ===
> >
> > checking installing pari? ... yes; install pari_seadata as well
> >
> > configure: === checking whether to install the pari_seadata_small SPKG
> ===
> >
> > configure: === checking whether to install the patch SPKG ===
> >
> > configure: === checking whether to install the pcre SPKG ===
> >
> > configure: === checking whether to install the perl_term_readline_gnu
> SPKG ===
> >
> > checking for perl module Term::ReadLine... ok
> >
> > checking Term::ReadLine module...... non-GNU
> >
> > configure: === checking whether to install the pkgconf SPKG ===
> >
> > checking for pkg-config >= 0.29...
> >
> > installing pkgconf spkg
> >
> > configure: === checking whether to install the rw SPKG ===
> >
> > configure: === checking whether to install the symmetrica SPKG ===
> >
> > configure: === checking whether to install the xz SPKG ===
> >
> > configure: === checking whether to install the yasm SPKG ===
> >
> > configure: === checking whether to install the zeromq SPKG ===
> >
> > configure: === checking whether to install the libsemigroups SPKG ===
> >
> > checking for LIBSEMIGROUPS... no
> >
> > checking SPKGs to install...
> >
> > 4ti2-1.6.7.p0
> >
> > alabaster-0.7.12
> >
> > appnope-0.1.0.p0
> >
> > arb-2.16.0.p0
> >
> > atlas-3.10.2.p3
> >
> > autotools-20141105.p0
> >
> > awali-1.0.2-190218
> >
> > babel-2.6.0
> >
> > backports_abc-0.5
> >
> > backports_functools_lru_cache-1.5
> >
> > backports_shutil_get_terminal_size-1.0.0.p1
> >
> > backports_ssl_match_hostname-3.5.0.1.p0
> >
> > barvinok-0.41.1
> >
> > benzene-20130630
> >
> > bleach-3.1.0
> >
> > bliss-0.73+debian-1+sage-2016-08-02.p0
> >
> > boost-1_66_0
> >
> > boost_cropped-1.66.0.p0
> >
> > brial-1.2.5
> >
> > buckygen-1.0
> >
> > bzip2-1.0.6-20150304.p0 will not be installed (configure check)
> >
> > cbc-2.9.4.p0
> >
> > ccache-3.3.4
> >
> > cddlib-0.94j
> >
> > certifi-2019.3.9
> >
> > cliquer-1.21.p4
> >
> > cmake-3.11.0
> >
> > cocoalib-0.99564
> >
> > combinatorial_designs-20140630.p0
> >
> > compilerwrapper-1.2
> >
> > configparser-3.7.4
> >
> > configure-2ab843c20b9601e9efb540e4a76624a8c29604eb
> >
> > conway_polynomials-0.5
> >
> > coxeter3-8ac9c71723c8ca57a836d6381aed125261e44e9e
> >
> > cryptominisat-5.6.8
> >
> > csdp-6.2.p0
> >
> > curl-7.62.0.p0
> >
> > cvxopt-1.1.8.p2
> >
> > cycler-0.10.0.p0
> >
> > cypari-2.1.1
> >
> > cysignals-1.10.2
> >
> > cython-0.29.12.p0
> >
> > d3js-3.4.8
> >
> > database_cremona_ellcurve-20161017
> >
> > database_jones_numfield-4
> >
> > database_kohel-20160724
> >
> > database_mutation_class-1.0
> >
> > database_odlyzko_zeta-20061209
> >
> > database_stein_watkins-20110713
> >
> > database_stein_watkins_mini-20070827
> >
> > database_symbolic_data-20070206
> >
> > dateutil-2.5.3
> >
> > decorator-4.4.0
> >
> > deformation-d05941b.p0
> >
> > defusedxml-0.6.0
> >
> > docutils-0.14
> >
> > dot2tex-2.11.3.p0
> >
> > e_antic-0.1.3
> >
> > ecl-16.1.2.p5
> >
> > eclib-20190226
> >
> > ecm-7.0.4.p1
> >
> > elliptic_curves-0.8.1
> >
> > entrypoints-0.3
> >
> > enum34-1.1.6
> >
> > fflas_ffpack-2.4.3
> >
> > flask-0.10.1.p0
> >
> > flask_autoindex-0.6.p0
> >
> > flask_babel-0.9.p0
> >
> > flask_oldsessions-0.10.p0
> >
> > flask_openid-1.2.5.p0
> >
> > flask_silk-0.2.p0
> >
> > flint-2.5.2.p4
> >
> > flintqs-1.0.p0
> >
> > fplll-5.2.1
> >
> > fpylll-0.4.1dev
> >
> > freetype-2.9.1
> >
> > fricas-1.3.5
> >
> > frobby-0.9.0.p2
> >
> > functools32-3.2.3-2.p0
> >
> > future-0.17.1
> >
> > gambit-15.1.1.p0
> >
> > gap-4.10.2.p1
> >
> > gap3-04jul17
> >
> > gap_jupyter-0.9
> >
> > gap_packages-4.10.2.p1
> >
> > gc-7.6.4.p0
> >
> > gcc-7.4.0
> >
> > gdb-8.2
> >
> > gf2x-1.2.p0
> >
> > gfan-0.6.2.p1
> >
> > gfortran-7.4.0 will not be installed (configure check)
> >
> > giac-1.5.0.63.p0
> >
> > giacpy_sage-0.6.7
> >
> > git-2.11.0 will not be installed (configure check)
> >
> > git_trac-20160625.p0
> >
> > givaro-4.1.1
> >
> > glpk-4.63.p2
> >
> > glucose-4.1
> >
> > gmp-6.1.2 will not be installed (configure check)
> >
> > gmpy2-2.1.0b1
> >
> > gp2c-0.0.10.p0
> >
> > graphs-20161026.p0
> >
> > gsl-2.5
> >
> > html5lib-1.0.1
> >
> > iconv-1.15 will not be installed (configure check)
> >
> > igraph-0.7.1999.p0
> >
> > imagesize-1.1.0
> >
> > iml-1.0.4p1.p2
> >
> > ipaddress-1.0.22
> >
> > ipykernel-4.8.2
> >
> > ipython-5.8.0
> >
> > ipython_genutils-0.2.0
> >
> > ipywidgets-7.4.2
> >
> > isl-0.20
> >
> > itsdangerous-1.1.0
> >
> > jinja2-2.10
> >
> > jmol-14.29.52
> >
> > jsonschema-2.6.0
> >
> > jupymake-0.9
> >
> > jupyter_client-5.2.4
> >
> > jupyter_core-4.4.0
> >
> > kenzo-1.1.7-r3
> >
> > kiwisolver-1.0.1
> >
> > latte_int-1.7.5.p0
> >
> > lcalc-1.23.p19
> >
> > libatomic_ops-7.6.2
> >
> > libbraiding-1.0
> >
> > libffi-3.2.1 will not be installed (configure check)
> >
> > libgd-2.1.1.1.p1
> >
> > libhomfly-1.02r4
> >
> > libogg-1.3.1.p0
> >
> > libpng-1.6.29.p1
> >
> > libsemigroups-0.6.7
> >
> > libtheora-1.1.1
> >
> > lidia-2.3.0+latte-patches-2019-05-02
> >
> > lie-2.2.2
> >
> > linbox-1.6.3
> >
> > lrcalc-1.2.p1
> >
> > lrslib-062+autotools-2017-03-03.p1
> >
> > m4ri-20140914.p0
> >
> > m4rie-20150908.p0
> >
> > markupsafe-1.1.0
> >
> > mathjax-2.7.4.p0
> >
> > matplotlib-2.2.4.p0
> >
> > maxima-5.42.2
> >
> > mcqd-1.0
> >
> > meataxe-1.0.p0
> >
> > mistune-0.8.4
> >
> > modular_decomposition-20100607
> >
> > mpc-1.1.0
> >
> > mpfi-1.5.2
> >
> > mpfr-4.0.1.p0
> >
> > mpfrcx-0.5
> >
> > mpir-3.0.0-644faf502c56f97d9accd301965fc57d6ec70868.p0
> >
> > mpmath-1.1.0
> >
> > nauty-26r1.p0
> >
> > nbconvert-5.4.0
> >
> > nbformat-4.4.0
> >
> > ncurses-6.0.p0 will not be installed (configure check)
> >
> > networkx-2.2
> >
> > ninja_build-1.8.2
> >
> > normaliz-3.7.2
> >
> > nose-1.3.7
> >
> > notebook-5.7.6.p0
> >
> > notedown-1.5.1
> >
> > ntl-11.3.2
> >
> > numpy-1.16.1
> >
> > openblas-0.3.6.p0
> >
> > openssl-1.1.1b
> >
> > ore_algebra-0.3
> >
> > p_group_cohomology-3.2
> >
> > packaging-18.0
> >
> > palp-2.1.p2
> >
> > pandoc_attributes-8bc82f6d
> >
> > pandocfilters-1.4.2
> >
> > pari-2.11.1.p2
> >
> > pari_elldata-20161017
> >
> > pari_galdata-20080411.p0
> >
> > pari_galpol-20180625
> >
> > pari_jupyter-1.3.2
> >
> > pari_nftables-20080929
> >
> > pari_seadata-20090618
> >
> > pari_seadata_small-20090618.p0
> >
> > patch-2.7.5
> >
> > pathlib2-2.3.3
> >
> > pathpy-7.1.p0
> >
> > pcre-8.40.p2
> >
> > perl_term_readline_gnu-1.35
> >
> > pexpect-4.6.0.p0
> >
> > pickleshare-0.7.5
> >
> > pillow-5.3.0.p0
> >
> > pip-18.1
> >
> > pkgconf-0.9.7.p2
> >
> > pkgconfig-1.4.0
> >
> > planarity-3.0.0.5.p0
> >
> > plantri-4.5
> >
> > polylib-5.22.5
> >
> > polymake-3.4
> >
> > polytopes_db-20170220.p0
> >
> > ppl-1.2.p1
> >
> > pplpy-0.8.4
> >
> > primecount-4.7
> >
> > prometheus_client-0.5.0
> >
> > prompt_toolkit-1.0.15
> >
> > psutil-5.2.0.p2
> >
> > ptyprocess-0.5.1.p0
> >
> > pycosat-0.6.3
> >
> > pycygwin-0.1
> >
> > pygments-2.3.1.p0
> >
> > pynac-0.7.26
> >
> > pynormaliz-2.7
> >
> > pyparsing-2.3.0
> >
> > pysingular-0.9.5
> >
> > python2-2.7.15.p1
> >
> > python3-3.7.3.p1
> >
> > python_igraph-0.7.1999
> >
> > python_openid-2.2.5.p0
> >
> > pytz-2018.7
> >
> > pyx-0.12.1.p0
> >
> > pyzmq-18.1.0
> >
> > qepcad-B.1.71
> >
> > qhull-2015-src-7.2.0.p1
> >
> > r-3.6.1
> >
> > ratpoints-2.1.3.p5
> >
> > readline-6.3.008.p0 will not be installed (configure check)
> >
> > requests-2.13.0
> >
> > rpy2-2.8.2.p1
> >
> > rst2ipynb-0.2.2.p0
> >
> > rubiks-20070912.p21
> >
> > rw-0.7.p0
> >
> > saclib-2.2.7
> >
> > sagenb-1.1.2
> >
> > sagenb_export-3.2
> >
> > sagetex-3.3
> >
> > scandir-1.9.0
> >
> > scipoptsuite-5.0.1
> >
> > scipy-1.2.0
> >
> > scons-1.2.0
> >
> > send2trash-1.5.0
> >
> > setuptools-40.6.3
> >
> > setuptools_scm-3.1.0
> >
> > simplegeneric-0.8.1.p0
> >
> > singledispatch-3.4.0.3.p0
> >
> > singular-4.1.1p2.p0
> >
> > singular_jupyter-0.9.7
> >
> > sip-4.18
> >
> > sirocco-2.0.p0
> >
> > six-1.12.0
> >
> > snowballstemmer-1.2.1.p0
> >
> > speaklater-1.3.p0
> >
> > sphinx-1.8.5.p0
> >
> > sphinxcontrib_websupport-1.1.0
> >
> > sqlite-3270100
> >
> > subprocess32-3.5.3
> >
> > surf-1.0.6-gcc6
> >
> > symmetrica-2.0.p11
> >
> > sympow-1.018.1.p13
> >
> > sympy-1.4.p0
> >
> > tachyon-0.98.9.p7
> >
> > tdlib-0.3.1.p0
> >
> > termcap-1.3.1.p3
> >
> > terminado-0.8.1
> >
> > testpath-0.4.2
> >
> > thebe-9624e0a0.p0
> >
> > threejs-r105
> >
> > tides-2.0.p0
> >
> > topcom-0.17.7
> >
> > tornado-4.5.2
> >
> > traitlets-4.3.2
> >
> > twisted-16.3.0.p0
> >
> > typing-3.6.6
> >
> > valgrind-3.14.0
> >
> > vcversioner-2.16.0.0.p0
> >
> > wcwidth-0.1.7.p0
> >
> > webencodings-0.5.1
> >
> > werkzeug-0.14.1
> >
> > widgetsnbextension-3.4.2
> >
> > xz-5.2.2.p0
> >
> > yasm-1.3.0.p0
> >
> > zeromq-4.2.5
> >
> > zlib-1.2.11.p0
> >
> > zn_poly-0.9.1.p0
> >
> > zope_interface-4.6.0
> >
> > checking that generated files are newer than configure... done
> >
> > configure: creating ./config.status
> >
> > config.status: creating build/make/Makefile-auto
> >
> > config.status: creating build/make/Makefile
> >
> > config.status: creating src/Makefile
> >
> > config.status: creating src/bin/sage-env-config
> >
> > config.status: executing depfiles commands
> >
> > config.status: executing mkdirs commands
> >
> > config.status: creating directory /usr/local/sage-8.9/logs/pkgs
> >
> > config.status: creating directory local
> >
> > config.status: creating directory local/bin
> >
> > config.status: creating directory local/etc
> >
> > config.status: creating directory local/include
> >
> > config.status: creating directory local/lib
> >
> > config.status: creating directory local/share
> >
> > config.status: creating directory local/var/lib/sage/installed
> >
> > [zabrocki@algebra sage-8.9]$ ./sage -f matplotlib
> >
> > make build/make/Makefile --stop
> >
> > make[1]: Entering directory `/usr/local/sage-8.9'
> >
> > make[1]: `build/make/Makefile' is up to date.
> >
> > make[1]: Leaving directory `/usr/local/sage-8.9'
> >
> > build/bin/sage-logger \
> >
> > "cd build/make && ./install 'matplotlib-clean'" logs/install.log
> >
> > make[1]: Entering directory `/usr/local/sage-8.9/build/make'
> >
> > make[1]: Leaving directory `/usr/local/sage-8.9/build/make'
> >
> > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***
> >
> > }
> >
> > BASH_FUNC_module()=() { eval `/usr/bin/modulecmd bash $*`
> >
> > _=/bin/env
> >
> > CONFIGURED_CC=gcc
> >
> > CONFIGURED_CXX=g++
> >
> > CONFIGURED_FC=gfortran
> >
> > CONFIGURED_OBJC=gcc
> >
> > CONFIGURED_OBJCXX=g++
> >
> > CVS_RSH=ssh
> >
> > G_BROKEN_FILENAMES=1
> >
> > HISTCONTROL=ignoredups
> >
> > HISTSIZE=1000
> >
> > HOME=/home/zabrocki
> >
> > HOSTNAME=algebra.math.yorku.ca
> >
> > LANG=en_US.UTF-8
> >
> > LESSOPEN=||/usr/bin/lesspipe.sh %s
> >
> > LOADEDMODULES=
> >
> > LOGNAME=zabrocki
> >
> >
> LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
>
>
> >
> > MAIL=/var/spool/mail/zabrocki
> >
> > MAKEFLAGS= V=1
> >
> > MAKELEVEL=1
> >
> > MAKE=make
> >
> > MFLAGS=
> >
> > MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles
> >
> > MODULESHOME=/usr/share/Modules
> >
> >
> PATH=/usr/local/sage-8.9/build/bin:/usr/local/sage-8.9/src/bin:/usr/local/sage-8.9/local/bin:.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin
>
>
> >
> > PG_ROOT=/opt/webwork/pg
> >
> > PWD=/usr/local/sage-8.9/build/make
> >
> > PYTHONPATH=/usr/local/sage-8.9/local
> >
> > QTDIR=/usr/lib64/qt-3.3
> >
> > QTINC=/usr/lib64/qt-3.3/include
> >
> > QTLIB=/usr/lib64/qt-3.3/lib
> >
> > SAGE_ARB_LIBRARY=arb
> >
> > SAGE_BROWSER=firefox
> >
> > SAGE_CONFIGURE_FLINT=--with-flint=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_GMP=--with-gmp=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_MPC=--with-mpc=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_MPFR=--with-mpfr=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_NTL=--with-ntl=/usr/local/sage-8.9/local
> >
> > SAGE_CONFIGURE_PARI=--with-pari=/usr/local/sage-8.9/local
> >
> > SAGE_CRTI_DIR=/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
> >
> > SAGE_EXTCODE=/usr/local/sage-8.9/local/share/sage/ext
> >
> > SAGE_FLINT_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_FREETYPE_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_GMP_INCLUDE=/usr/local/sage-8.9/local/include
> >
> > SAGE_GMP_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_LOCAL=/usr/local/sage-8.9/local
> >
> > SAGE_LOGS=/usr/local/sage-8.9/logs/pkgs
> >
> > SAGE_MPC_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_MPFR_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_NTL_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_ORIG_PATH_SET=True
> >
> >
> SAGE_ORIG_PATH=.:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/openv/netbackup/bin:/opt/dell/srvadmin/bin:/opt/webwork/webwork2/bin:/home/zabrocki/bin
>
>
> >
> > SAGE_PARI_CFG=/usr/local/sage-8.9/local/lib/pari/pari.cfg
> >
> > SAGE_PARI_PREFIX=/usr/local/sage-8.9/local
> >
> > SAGE_PKG_CONFIG_PATH=
> >
> > SAGE_PYTHON_VERSION=2
> >
> > SAGE_ROOT=/usr/local/sage-8.9
> >
> > SAGE_SHARE=/usr/local/sage-8.9/local/share
> >
> > SAGE_SPKG_INST=/usr/local/sage-8.9/local/var/lib/sage/installed
> >
> > SAGE_SRC=/usr/local/sage-8.9/src
> >
> > SAGE_VERSION=8.9
> >
> > SELINUX_LEVEL_REQUESTED=
> >
> > SELINUX_ROLE_REQUESTED=
> >
> > SELINUX_USE_CURRENT_RANGE=
> >
> > SHELL=/bin/bash
> >
> > SHLVL=5
> >
> > SSH_CLIENT=130.63.254.6 61734 2029
> >
> > SSH_CONNECTION=130.63.254.6 61734 130.63.76.137 2029
> >
> > SSH_TTY=/dev/pts/0
> >
> > TERM=xterm-256color
> >
> > USER=zabrocki
> >
> > WEBWORK_ROOT=/opt/webwork/webwork2
> >
> > ***********************************************
> >
> > make[1]: Entering directory `/usr/local/sage-8.9/build/make'
> >
> > sage-spkg-uninstall matplotlib '/usr/local/sage-8.9/local'
> >
> > Package 'matplotlib' is currently not installed
> >
> > No legacy uninstaller found for 'matplotlib'; nothing to do
> >
> > make[1]: Leaving directory `/usr/local/sage-8.9/build/make'
> >
> >
> > real 0m0.080s
> >
> > user 0m0.064s
> >
> > sys 0m0.015s
> >
> > Sage build/upgrade complete!
> >
> > make build/make/Makefile --stop
> >
> > make[1]: Entering directory `/usr/local/sage-8.9'
> >
> > make[1]: `build/make/Makefile' is up to date.
> >
> > make[1]: Leaving directory `/usr/local/sage-8.9'
> >
> > build/bin/sage-logger \
> >
> > "cd build/make && ./install 'all-toolchain'" logs/install.log
> >
> > make[1]: Entering directory `/usr/local/sage-8.9/build/make'
> >
> > make[1]: Leaving directory `/usr/local/sage-8.9/build/make'
> >
> > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***
> >
> > }
> >
> > BASH_FUNC_module()=() { eval `/usr/bin/modulecmd bash $*`
> >
> > _=/bin/env
> >
> > CONFIGURED_CC=gcc
> >
> > CONFIGURED_CXX=g++
> >
> > CONFIGURED_FC=gfortran
> >
> > CONFIGURED_OBJC=gcc
> >
> > CONFIGURED_OBJCXX=g++
> >
> > CVS_RSH=ssh
> >
> > G_BROKEN_FILENAMES=1
> >
> > HISTCONTROL=ignoredups
> >
> > HISTSIZE=1000
> >
> > HOME=/home/zabro
>
> ...
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