After using `./configure --disable-sage_conf` and running `make testlong`,
I see the same failures as reported with earlier versions. I've opened
issues #40869 (for the ninja warning message, which we should be able to
suppress when doctesting) and #40873 for the other problem, which seems to
be related to using homebrew's Singular. I see a few new failures:
**********************************************************************
File "src/sage/misc/package.py", line 280, in sage.misc.package.pkg_sources
Failed example:
sage_conf_info.is_installed()
Expected:
True
Got:
False
**********************************************************************
and different failures in sage/env.py:
**********************************************************************
File "src/sage/env.py", line 22, in sage.env
Failed example:
out = check_output([sys.executable, "-c", cmd],
env=env).decode().strip() # long time
Exception raised:
Traceback (most recent call last):
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/src/sage/doctest/forker.py",
line 733, in _run
self.compile_and_execute(example, compiler, test.globs)
~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/src/sage/doctest/forker.py",
line 1157, in compile_and_execute
exec(compiled, globs)
~~~~^^^^^^^^^^^^^^^^^
File "<doctest sage.env[8]>", line 1, in <module>
out = check_output([sys.executable, "-c", cmd],
env=env).decode().strip() # long time
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/homebrew/Cellar/[email protected]/3.13.7/Frameworks/Python.framework/Versions/3.13/lib/python3.13/subprocess.py",
line 472, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
**kwargs).stdout
^^^^^^^^^
File
"/opt/homebrew/Cellar/[email protected]/3.13.7/Frameworks/Python.framework/Versions/3.13/lib/python3.13/subprocess.py",
line 577, in run
raise CalledProcessError(retcode, process.args,
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command
'['/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/bin/python3',
'-c', "from sage.all import SAGE_ROOT, SAGE_LOCAL;from os.path import
samefile;s1 = samefile(SAGE_ROOT,
'/Users/palmieri/Sage/TESTING/sage-10.8.beta4');s2 = samefile(SAGE_LOCAL,
'/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local');print(s1 and s2);"]'
returned non-zero exit status 1.
**********************************************************************
File "src/sage/env.py", line 23, in sage.env
Failed example:
out == "True"
# long time
Exception raised:
Traceback (most recent call last):
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/src/sage/doctest/forker.py",
line 733, in _run
self.compile_and_execute(example, compiler, test.globs)
~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/src/sage/doctest/forker.py",
line 1157, in compile_and_execute
exec(compiled, globs)
~~~~^^^^^^^^^^^^^^^^^
File "<doctest sage.env[9]>", line 1, in <module>
out == "True"
# long time
^^^
NameError: name 'out' is not defined
**********************************************************************
File "src/sage/env.py", line 406, in sage.env.cython_aliases
Failed example:
cython( # optional -
sage.misc.cython
'''
#distutils: extra_compile_args = OPENMP_CFLAGS
#distutils: extra_link_args = OPENMP_CFLAGS
from cython.parallel import prange
cdef int i
cdef int n = 30
cdef int sum = 0
for i in prange(n, num_threads=4, nogil=True):
sum += i
print(sum)
''')
Exception raised:
Traceback (most recent call last):
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/spawn.py",
line 87, in spawn
subprocess.check_call(cmd, env=_inject_macos_ver(env))
~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/homebrew/Cellar/[email protected]/3.13.7/Frameworks/Python.framework/Versions/3.13/lib/python3.13/subprocess.py",
line 419, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/usr/bin/gcc',
'-fno-strict-overflow', '-Wsign-compare', '-Wunreachable-code',
'-fno-common', '-dynamic', '-DNDEBUG', '-g', '-O3', '-Wall',
'-I/Users/palmieri/Sage/TESTING/sage-10.8.beta4',
'-I/Users/palmieri/Sage/TESTING/sage-10.8.beta4/src',
'-I/Users/palmieri/Sage/TESTING/sage-10.8.beta4/build/sage-distro/src',
'-I/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/include',
'-I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.13/include/python3.13',
'-c',
'/var/folders/z6/yjw_7s357yx3_mhh81__lplc0000gn/T/sage_pqs5osot/spyx_w_aj7dbn/_var_folders_z6_yjw_7s357yx3_mhh81__lplc0000gn_T_sage_pqs5osot_tmp_8u17pu64_pyx/_var_folders_z6_yjw_7s357yx3_mhh81__lplc0000gn_T_sage_pqs5osot_tmp_8u17pu64_pyx_0.c',
'-o',
'/var/folders/z6/yjw_7s357yx3_mhh81__lplc0000gn/T/sage_pqs5osot/spyx_w_aj7dbn/_var_folders_z6_yjw_7s357yx3_mhh81__lplc0000gn_T_sage_pqs5osot_tmp_8u17pu64_pyx/build/temp.macosx-15.0-arm64-cpython-313/var/folders/z6/yjw_7s357yx3_mhh81__lplc0000gn/T/sage_pqs5osot/spyx_w_aj7dbn/_var_folders_z6_yjw_7s357yx3_mhh81__lplc0000gn_T_sage_pqs5osot_tmp_8u17pu64_pyx/_var_folders_z6_yjw_7s357yx3_mhh81__lplc0000gn_T_sage_pqs5osot_tmp_8u17pu64_pyx_0.o',
'-fopenmp', '-w']' returned non-zero exit status 1.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/compilers/C/unix.py",
line 221, in _compile
self.spawn(compiler_so + cc_args + [src, '-o', obj] +
extra_postargs)
~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/compilers/C/base.py",
line 1158, in spawn
spawn(cmd, dry_run=self.dry_run, **kwargs)
~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/spawn.py",
line 93, in spawn
raise DistutilsExecError(
f"command {_debug(cmd)!r} failed with exit code
{err.returncode}"
) from err
distutils.errors.DistutilsExecError: command '/usr/bin/gcc' failed with
exit code 1
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/src/sage/misc/cython.py",
line 461, in cython
dist.run_command("build")
~~~~~~~~~~~~~~~~^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/dist.py",
line 1102, in run_command
super().run_command(command)
~~~~~~~~~~~~~~~~~~~^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/dist.py",
line 1021, in run_command
cmd_obj.run()
~~~~~~~~~~~^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/command/build.py",
line 135, in run
self.run_command(cmd_name)
~~~~~~~~~~~~~~~~^^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/cmd.py",
line 357, in run_command
self.distribution.run_command(command)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/dist.py",
line 1102, in run_command
super().run_command(command)
~~~~~~~~~~~~~~~~~~~^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/dist.py",
line 1021, in run_command
cmd_obj.run()
~~~~~~~~~~~^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/command/build_ext.py",
line 96, in run
_build_ext.run(self)
~~~~~~~~~~~~~~^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/command/build_ext.py",
line 368, in run
self.build_extensions()
~~~~~~~~~~~~~~~~~~~~~^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/command/build_ext.py",
line 484, in build_extensions
self._build_extensions_serial()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/command/build_ext.py",
line 510, in _build_extensions_serial
self.build_extension(ext)
~~~~~~~~~~~~~~~~~~~~^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/command/build_ext.py",
line 261, in build_extension
_build_ext.build_extension(self, ext)
~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/Cython/Distutils/build_ext.py",
line 136, in build_extension
super().build_extension(ext)
~~~~~~~~~~~~~~~~~~~~~~~^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/command/build_ext.py",
line 565, in build_extension
objects = self.compiler.compile(
sources,
...<5 lines>...
depends=ext.depends,
)
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/compilers/C/base.py",
line 655, in compile
self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts)
~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/setuptools/_distutils/compilers/C/unix.py",
line 223, in _compile
raise CompileError(msg)
distutils.compilers.C.errors.CompileError: command '/usr/bin/gcc'
failed with exit code 1
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/src/sage/doctest/forker.py",
line 733, in _run
self.compile_and_execute(example, compiler, test.globs)
~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/src/sage/doctest/forker.py",
line 1157, in compile_and_execute
exec(compiled, globs)
~~~~^^^^^^^^^^^^^^^^^
File "<doctest sage.env.cython_aliases[5]>", line 1, in <module>
cython( # optional -
sage.misc.cython
~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
'''
^^^
...<11 lines>...
print(sum)
^^^^^^^^^^
''')
^^^^
File "sage/misc/lazy_import.pyx", line 414, in
sage.misc.lazy_import.LazyImport.__call__
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/src/sage/misc/cython.py",
line 734, in cython_compile
return cython_import_all(tmpfile, get_globals(), **kwds)
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/src/sage/misc/cython.py",
line 620, in cython_import_all
m = cython_import(filename, **kwds)
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/src/sage/misc/cython.py",
line 588, in cython_import
name, build_dir = cython(filename, **kwds)
~~~~~~^^^^^^^^^^^^^^^^^^
File
"/Users/palmieri/Sage/TESTING/sage-10.8.beta4/src/sage/misc/cython.py",
line 467, in cython
raise RuntimeError(msg.strip())
RuntimeError: command '/usr/bin/gcc' failed with exit code 1
clang: error: unsupported option '-fopenmp'
**********************************************************************
On Monday, September 22, 2025 at 11:39:19 AM UTC-7 John H Palmieri wrote:
> As I said, I think the problem is the removal of the file
> `pkgs/sage-conf/_sage_conf/_conf.py.in`, which happened in
> https://github.com/sagemath/sage/pull/40765. You might try testing those
> PRs before positively reviewing them.
>
>
> On Monday, September 22, 2025 at 11:05:28 AM UTC-7 Dima Pasechnik wrote:
>
>> ./configure --disable-sage_conf && make
>>
>> should complete and work.
>> sage_conf isn't needed anymore, but I am not sure now what's wrong
>> without this "disable"
>>
>>
>>
>> On September 22, 2025 12:57:45 PM CDT, John H Palmieri <
>> [email protected]> wrote:
>>
>>> This fails to build for me. (By "this", I mean `./bootstrap &&
>>> ./configure && make`.) I see this message in install.log:
>>>
>>> make[3]: *** No rule to make target
>>> `/Users/palmieri/Sage/TESTING/clean/sage-10.8.beta3/pkgs/sage-conf/_sage_conf/_conf.py',
>>>
>>> needed by
>>> `/Users/palmieri/Sage/TESTING/clean/sage-10.8.beta3/local/var/lib/sage/venv-python3.13/var/lib/sage/installed/sage_conf-10.8.beta4'.
>>>
>>> Stop.
>>> make[3]: *** Waiting for unfinished jobs....
>>>
>>> I'm guessing this is because someone deleted pkgs/sage-conf/_sage_conf/_
>>> conf.py.in.
>>>
>>>
>>>
>>> On Sunday, September 21, 2025 at 11:19:32 AM UTC-7 Volker Braun wrote:
>>>
>>>> As always, you can get the latest beta version from the "develop" git
>>>> branch. Alternatively, the self-contained source tarball is at
>>>> http://www.sagemath.org/download-latest.html
>>>>
>>>>
>>>> 83b52a79bab (tag: 10.8.beta4, github/develop) Updated SageMath version
>>>> to 10.8.beta4
>>>> 9c1da99ac79 gh-40850: fixing a bug in perfect_power
>>>> 4e5f1d9ee8b gh-40849: some details in arith/misc
>>>> d87f9dfd541 gh-40848: type annotation for is_simple and is_smooth
>>>> 82925d244c4 gh-40842: git-ignore sagemath.egg-info
>>>> 800f78b2067 gh-40837: adding a comment about chain_polynomial
>>>> 872adfb54cd gh-40836: Fix BipartiteGraph.vertex_cover(value_only=True)
>>>> for disconnected graphs
>>>> 7271bd0e54b gh-40833: various details in coding
>>>> 4f0a7283cb6 gh-40830: Add every path in XDG_DATA_DIRS to
>>>> `sage_data_paths`
>>>> 3c071b3869e gh-40829: a few fixes for pycodestyle
>>>> 7bb0818d549 gh-40827: ⬆️ Bump astral-sh/setup-uv from 6.6.1 to 6.7.0
>>>> 59139846046 gh-40826: Add some more "long time" annotations
>>>> 3b76ec2a0b4 gh-40821: Devcontainer: use devcontainer id as key for venv
>>>> and build directory
>>>> 1eb2b9aec16 gh-40819: various details in algebras, categories
>>>> d5468257435 gh-40818: add Newton polytopes for Laurent polynomials
>>>> 3142b99ddda gh-40817: some details about imports in combinat
>>>> 4f4d6e7d419 gh-40815: Speed up computation of radical of polynomial
>>>> eb4f55ce2ca gh-40811: Fixes incorrect jordan form issue
>>>> d2e4be5bdf9 gh-40808: add Newton polytopes in one variable
>>>> f911c0bdbd3 gh-40799: Move typing imports to TYPE_CHECKING block and
>>>> enable relevant ruff checks
>>>> 2c1f272d743 gh-40797: Build metadata fixes 10.8.beta2
>>>> c55f6ae194c gh-40771: Don't fall back to pari to compute the
>>>> discriminant of a maximal order.
>>>> 861e13d46eb gh-40765: Fix include directories in editable installs
>>>> 217acf3331b gh-40716: Make computation of LU decomposition of matrix
>>>> over GF(2^e) interruptible
>>>> 67330f3e735 gh-40702: add harmonic polytope to the library
>>>> 57aa4b58d8f gh-40697: Fix bug in SkewPolynomialRing when twisting
>>>> morphism is trivial
>>>> 7562e51842b gh-40686: Install pyx sources with meson
>>>> 3df6f01387d gh-40681: Add subsection Documentation Previews to
>>>> developer guide
>>>> 4758b85a182 gh-40587: Minor documentation formatting improvement
>>>> d5a1370ee51 gh-39905: Improve documentation of various gap-related
>>>> methods
>>>> 1b43bdbd8ab gh-39718: Add a note regarding element containment testing
>>>> 02da09c8a2a gh-39512: Add test for github format of doctest report
>>>> ccd017ef506 gh-39364: bump gmpy2 to 2.2.1
>>>> 53bea4cf004 gh-38589: FiniteField: make GF(p,n) the same as GF(p^n)
>>>> ad8740465a9 gh-36892: Decapitalize filenames in PREP doc
>>>> 28b7af09866 (tag: 10.8.beta3) Updated SageMath version to 10.8.beta3
>>>>
>>>
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