I just tried http://jmol.sourceforge.net/demo/dots/ and it worked
perfectly.  After opening a new worksheet in the notebook mode I still
get a black square.  Two questions:

1)  Is notebook mode the only way to make 3d plots?

2) Is it possible that I have a path problem with sage in /tools
rather than /usr/bin?

Jack


On Jan 19, 12:31 pm, Jason Grout <jason-s...@creativetrax.com> wrote:
> jack wrote:
> > Thanks for the suggestions.  I have now installed icedtea6-plugin  and
> > sun-java6-plugin together with their dependencies etc.  Running sage
> > still gives no output and no error message.
>
> > However, when I run in notebook mode I get a solid black square with a
> > message saying 'jmol loading' with a countdown.  The square then stays
> > black.  While this is progress of a kind, it still gives no image.
>
> When you go to, for example,http://jmol.sourceforge.net/demo/dots/,
> does jmol work (can you rotate the model, etc.?)
>
> Thanks,
>
> Jason
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