I do not believe I I have permissions to build on a disk physically in the machine being used. The scratch folder is where I was told to install any software that I wish to use. The home directory that I have is not large enough to install anything.
On Tue, Mar 24, 2020 at 8:43 PM Dima Pasechnik <dimp...@gmail.com> wrote: > > > On Wed, 25 Mar 2020, 02:21 Kashif Bari, <kashb...@gmail.com> wrote: > >> Hi Dima, >> >> I am building locally, as this is a university cluster and I only have >> access to my local directories. >> > > by "local" I mean the filesystem on a disk physically in the machine you > are using, > as opposed to a networked file system, often used on HPC clusters. > > HPC clusters usually give users space for their home directories on > networked file systems, and for "scratch" partitions too. > > >> Unfortunately, this did not resolve the issue and this line was added to >> my output: >> >> [sqlite-3270100] configure: WARNING: unrecognized options: >> --disable-maintainer-mode >> >> In the log file, it still has this as the last error: >> >> configure: error: in >> `/scratch/user/kbari/sage-8.9/local/var/tmp/sage/build/sqlite-3270100/src': >> configure: error: C compiler cannot create executables >> >> Best, >> Kash >> >> On Tue, Mar 24, 2020 at 7:53 AM Dima Pasechnik <dimp...@gmail.com> wrote: >> >>> On Tue, Mar 24, 2020 at 4:51 PM Kashif Bari <kashb...@gmail.com> wrote: >>> > >>> > I believe I was able to resolve the issue with mpc-1.1.0 by loading a >>> more recent version of the texinfo package! Hopefully others who have this >>> issue will be able to resolve it similarly. >>> > >>> > However, I ended up running into this issue when running make again: >>> > >>> > Error building Sage. >>> > >>> > The following package(s) may have failed to build (not necessarily >>> > during this run of 'make all-start'): >>> > >>> > * package: sqlite-3270100 >>> > log file: /scratch/user/kbari/sage-8.9/logs/pkgs/sqlite-3270100.log >>> > build directory: >>> /scratch/user/kbari/sage-8.9/local/var/tmp/sage/build/sqlite-3270100 >>> > >>> > The build directory may contain configuration files and other >>> potentially >>> > helpful information. WARNING: if you now run 'make' again, the build >>> > directory will, by default, be deleted. Set the environment variable >>> > SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. >>> > >>> > make: *** [all-start] Error 1 >>> > >>> >>> this is a familiar problem, due to skew clocks on your system, I suppose. >>> Is /scratch/ a local filesystem? If not, you'd better try building on >>> a local filesystem. >>> (the problem is that sq >>> In the upcoming release one should be able to use sqlite from the >>> system, >>> thanks to https://trac.sagemath.org/ticket/29002 >>> >>> One way around this should be to change the line >>> >>> sdh_configure >>> >>> near the bottom of build/pkgs/sqlite/spkg-install >>> >>> to be >>> >>> sdh_configure --disable-maintainer-mode >>> >>> and try again running make again. >>> >>> (This change should make sqlite's ./configure less sensitive to skew >>> clock) >>> >>> HTH, >>> Dima >>> >>> >>> >>> > It seems CentOS doesn't like when I install Sage! Thank you all once >>> again for all your helpful comments! >>> > >>> > On Wed, Mar 18, 2020 at 11:33 PM Dima Pasechnik <dimp...@gmail.com> >>> wrote: >>> >> >>> >> On Thu, Mar 19, 2020 at 12:25 PM Kashif Bari <kashb...@gmail.com> >>> wrote: >>> >> > >>> >> > Thank you, Dima, I was able to load the texinfo package before I >>> did make and I believe this resolved my issue with mpfr. However, I ran >>> into the same issue with mpc-1.1.0 now instead of mpfr. >>> >> >>> >> hmm, the same? If you have now makeinfo installed, it should be a >>> >> different issue. >>> >> >>> >> > >>> >> > I currently have sage 8.9 installed on my personal laptop, so I >>> figured I would stick with the same version that I know my code runs on. >>> >> > >>> >> > On Wed, Mar 18, 2020 at 9:56 PM Dima Pasechnik <dimp...@gmail.com> >>> wrote: >>> >> >> >>> >> >> mpfr needs makeinfo program to be installed. This is a pretty >>> standard thing, >>> >> >> which on Centos is in texinfo package >>> >> >> >>> https://centos.pkgs.org/7/centos-x86_64/texinfo-5.1-5.el7.x86_64.rpm.html >>> >> >> >>> >> >> >>> >> >> By the way, why are you building Sage 8.9, and not 9.0? >>> >> >> >>> >> >> On Thu, Mar 19, 2020 at 7:00 AM Kashif Bari <kashb...@gmail.com> >>> wrote: >>> >> >> > >>> >> >> > I am trying to install Sage version 8.9 on the High performance >>> cluster at my university, which runs Linux (CentOS 7). I am installing to >>> my local "scratch" folder since I do not have administrative permissions. I >>> am trying to install from source code as the pre-built binaries are for >>> Ubuntu and Debian and did not work for me and I was unsure if they would >>> work on CentOS 7. I was able to run ./configure without any issues and then >>> when i did make, I received the following log file (attached) and error: >>> >> >> > >>> >> >> > Error building Sage. >>> >> >> > >>> >> >> > The following package(s) may have failed to build (not >>> necessarily >>> >> >> > during this run of 'make all-start'): >>> >> >> > >>> >> >> > * package: mpfr-4.0.1.p0 >>> >> >> > log file: >>> /scratch/user/kbari/sage-8.9/logs/pkgs/mpfr-4.0.1.p0.log >>> >> >> > build directory: >>> /scratch/user/kbari/sage-8.9/local/var/tmp/sage/build/mpfr-4.0.1.p0 >>> >> >> > >>> >> >> > The build directory may contain configuration files and other >>> potentially >>> >> >> > helpful information. WARNING: if you now run 'make' again, the >>> build >>> >> >> > directory will, by default, be deleted. Set the environment >>> variable >>> >> >> > SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. >>> >> >> > >>> >> >> > make[1]: *** [all-start] Error 1 >>> >> >> > make[1]: Leaving directory `/scratch/user/kbari/sage-8.9' >>> >> >> > make: *** [all] Error 2 >>> >> >> > >>> >> >> > >>> >> >> > I have tried to contact the help and support for the cluster, >>> but they do not know much about Sage. Any help would be greatly >>> appreciated! 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