Tried from source and got this error:
Error building Sage.
The following package(s) may have failed to build (not necessarily
during this run of 'make all-start'):
* package: r-3.6.2
log file: /home/lmiller/sage-9.0/logs/pkgs/r-3.6.2.log
build directory: /home/lmiller/sage-9.0/local/var/tmp/sage/build/r-3.6.2
which I'm guessing is only needed if one wants to use integration with R.
At this time I don't but in future I might, should I install R and
rebuild? Build took a LONG time.
Also, version 9 is now in ~/SAGE_ROOT/local but the system version is still
8.1. I guess I need to modify path or create a symlink to get sage
available to terminal on boot?
Finally, can the color scheme for sage on the terminal be changed? I used a
dark background so this is not easy to read.
Thanks in advance!
On Wednesday, April 8, 2020 at 12:14:48 AM UTC-5, Dima Pasechnik wrote:
>
> On Wed, Apr 8, 2020 at 11:05 AM hbetx9 <lance....@gmail.com <javascript:>>
> wrote:
>
> > I installed from package on Mint 19.3. I'm happy to run whatever is
> needed to help diagnose. For context, I have installed python 2.7.17 and
> the package pulled sage 8.1. I'm not sure why the packages didn't pull the
> most up to date. Is there a PPA I need to add?
> >
>
> my understanding is that MInt 19 by default follows Ubunu 18.04 (which
> indeed has Sage 8.1).
> We'd recommend you to build Sage (say, the latest stable version, 9.0)
> from source instead.
> While latest Ubuntu does have Sage 9.0, I don't know how to get it
> installed on your Mint, from PPA or otherwise.
> Perhaps you can ask on a Mint forum.
>
> HTH
> Dima
>
>
> > Best,
> > Lance
> >
> > On Saturday, April 4, 2020 at 9:49:09 PM UTC-5, Dima Pasechnik wrote:
> >>
> >> On Sun, Apr 5, 2020 at 7:44 AM Lance Edward Miller <lem...@uark.edu>
> wrote:
> >> >
> >> > After install on Linux Mint 19.3, I got the following crash report.
> Any help is appreciated.
> >>
> >> What exactly have you installed?
> >> A binary installation, or done a build from sources?
> >>
> >> >
> >> >
> ***************************************************************************
> >> >
> >> > IPython post-mortem report
> >> >
> >> > {'commit_hash': u'b467d487e',
> >> > 'commit_source': 'installation',
> >> > 'default_encoding': 'UTF-8',
> >> > 'ipython_path': '/usr/lib/python2.7/dist-packages/IPython',
> >> > 'ipython_version': '5.5.0',
> >> > 'os_name': 'posix',
> >> > 'platform':
> 'Linux-5.3.0-40-generic-x86_64-with-LinuxMint-19.3-tricia',
> >> > 'sys_executable': '/usr/bin/python',
> >> > 'sys_platform': 'linux2',
> >> > 'sys_version': '2.7.17 (default, Nov 7 2019, 10:07:09) \n[GCC
> 7.4.0]'}
> >> >
> >> >
> ***************************************************************************
> >> >
> >> >
> >> >
> >> >
> ***************************************************************************
> >> >
> >> > Crash traceback:
> >> >
> >> >
> ---------------------------------------------------------------------------
> >> >
> ---------------------------------------------------------------------------
> >> > ImportError Python 2.7.17:
> /usr/bin/python
> >> > Sat Apr 4
> 18:39:09 2020
> >> > A problem occurred executing Python code. Here is the sequence of
> function
> >> > calls leading up to the error, with the most recent (innermost) call
> last.
> >> > /usr/share/sagemath/bin/sage-ipython in <module>()
> >> > 1 #!/usr/bin/env python
> >> > 2 # -*- coding: utf-8 -*-
> >> > 3 """
> >> > 4 Sage IPython startup script.
> >> > 5 """
> >> > 6
> >> > 7 from sage.repl.interpreter import SageTerminalApp
> >> > 8
> >> > 9 app = SageTerminalApp.instance()
> >> > ---> 10 app.initialize()
> >> > global app.initialize = <bound method
> SageTerminalApp.initialize of <sage.repl.interpreter.SageTerminalApp object
> at 0x7f76836e7150>>
> >> > 11 app.start()
> >> >
> >> > <decorator-gen-110> in
> initialize(self=<sage.repl.interpreter.SageTerminalApp object>, argv=None)
> >> >
> >> > /usr/lib/python2.7/dist-packages/traitlets/config/application.pyc in
> catch_config_error(method=<function initialize>,
> app=<sage.repl.interpreter.SageTerminalApp object>, *args=(None,),
> **kwargs={})
> >> > 72 TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR = False
> >> > 73 else:
> >> > 74 raise ValueError("Unsupported value for environment
> variable: 'TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR' is set to '%s'
> which is none of {'0', '1', 'false', 'true', ''}."% _envvar )
> >> > 75
> >> > 76
> >> > 77 @decorator
> >> > 78 def catch_config_error(method, app, *args, **kwargs):
> >> > 79 """Method decorator for catching invalid config
> (Trait/ArgumentErrors) during init.
> >> > 80
> >> > 81 On a TraitError (generally caused by bad config), this
> will print the trait's
> >> > 82 message, and exit the app.
> >> > 83
> >> > 84 For use on init methods, to prevent invoking excepthook
> on invalid input.
> >> > 85 """
> >> > 86 try:
> >> > ---> 87 return method(app, *args, **kwargs)
> >> > method = <function initialize at 0x7f76806919d0>
> >> > app = <sage.repl.interpreter.SageTerminalApp object at
> 0x7f76836e7150>
> >> > args = (None,)
> >> > kwargs = {}
> >> > 88 except (TraitError, ArgumentError) as e:
> >> > 89 app.print_help()
> >> > 90 app.log.fatal("Bad config encountered during
> initialization:")
> >> > 91 app.log.fatal(str(e))
> >> > 92 app.log.debug("Config at the time: %s", app.config)
> >> > 93 app.exit(1)
> >> > 94
> >> > 95
> >> > 96 class ApplicationError(Exception):
> >> > 97 pass
> >> > 98
> >> > 99
> >> > 100 class LevelFormatter(logging.Formatter):
> >> > 101 """Formatter with additional `highlevel` record
> >> > 102
> >> >
> >> > /usr/lib/python2.7/dist-packages/IPython/terminal/ipapp.pyc in
> initialize(self=<sage.repl.interpreter.SageTerminalApp object>, argv=None)
> >> > 301
> >> > 302 return super(TerminalIPythonApp,
> self).parse_command_line(argv)
> >> > 303
> >> > 304 @catch_config_error
> >> > 305 def initialize(self, argv=None):
> >> > 306 """Do actions after construct, but before starting
> the app."""
> >> > 307 super(TerminalIPythonApp, self).initialize(argv)
> >> > 308 if self.subapp is not None:
> >> > 309 # don't bother initializing further, starting
> subapp
> >> > 310 return
> >> > 311 # print self.extra_args
> >> > 312 if self.extra_args and not self.something_to_run:
> >> > 313 self.file_to_run = self.extra_args[0]
> >> > 314 self.init_path()
> >> > 315 # create the shell
> >> > --> 316 self.init_shell()
> >> > self.init_shell = <bound method SageTerminalApp.init_shell of
> <sage.repl.interpreter.SageTerminalApp object at 0x7f76836e7150>>
> >> > 317 # and draw the banner
> >> > 318 self.init_banner()
> >> > 319 # Now a variety of things that happen after the
> banner is printed.
> >> > 320 self.init_gui_pylab()
> >> > 321 self.init_extensions()
> >> > 322 self.init_code()
> >> > 323
> >> > 324 def init_shell(self):
> >> > 325 """initialize the InteractiveShell instance"""
> >> > 326 # Create an InteractiveShell instance.
> >> > 327 # shell.display_banner should always be False for the
> terminal
> >> > 328 # based app, because we call shell.show_banner() by
> hand below
> >> > 329 # so the banner shows *before* all extension loading
> stuff.
> >> > 330 self.shell =
> self.interactive_shell_class.instance(parent=self,
> >> > 331 profile_dir=self.profile_dir,
> >> >
> >> > /usr/lib/python2.7/dist-packages/sage/repl/interpreter.pyc in
> init_shell(self=<sage.repl.interpreter.SageTerminalApp object>)
> >> > 730 This code is based on
> >> > 731 :meth:`TerminalIPythonApp.init_shell`.
> >> > 732
> >> > 733 EXAMPLES::
> >> > 734
> >> > 735 sage: from sage.repl.interpreter import
> SageTerminalApp
> >> > 736 sage: app = SageTerminalApp.instance()
> >> > 737 sage: app.shell
> >> > 738 <sage.repl.interpreter.SageTestShell object at
> 0x...>
> >> > 739 """
> >> > 740 # Shell initialization
> >> > 741 self.shell = self.shell_class.instance(
> >> > 742 parent=self,
> >> > 743 config=self.config,
> >> > 744 profile_dir=self.profile_dir,
> >> > --> 745 ipython_dir=self.ipython_dir)
> >> > global ipython_dir = undefined
> >> > self.ipython_dir = u'/home/lmiller/.ipython'
> >> > 746 self.shell.configurables.append(self)
> >> > 747 self.shell.has_sage_extensions = SAGE_EXTENSION in
> self.extensions
> >> > 748
> >> > 749 # Load the %lprun extension if available
> >> > 750 try:
> >> > 751 import line_profiler
> >> > 752 except ImportError:
> >> > 753 pass
> >> > 754 else:
> >> > 755 self.extensions.append('line_profiler')
> >> > 756
> >> > 757 if self.shell.has_sage_extensions:
> >> > 758 self.extensions.remove(SAGE_EXTENSION)
> >> > 759
> >> > 760 # load sage extension here to get a crash if
> >> >
> >> > /usr/lib/python2.7/dist-packages/traitlets/config/configurable.pyc in
> instance(cls=<class 'sage.repl.interpreter.SageTerminalInteractiveShell'>,
> *args=(), **kwargs={'config': {'InteractiveShell': {'term_title': True,
> 'color...ue}, 'SageTerminalApp': {'force_interact': True}}, 'ipython_dir':
> u'/home/lmiller/.ipython', 'parent': <sage.repl.interpreter.SageTerminalApp
> object>, 'profile_dir': <IPython.core.profiledir.ProfileDir object>})
> >> > 397 >>> class Foo(SingletonConfigurable): pass
> >> > 398 >>> foo = Foo.instance()
> >> > 399 >>> foo == Foo.instance()
> >> > 400 True
> >> > 401
> >> > 402 Create a subclass that is retrived using the base
> class instance::
> >> > 403
> >> > 404 >>> class Bar(SingletonConfigurable): pass
> >> > 405 >>> class Bam(Bar): pass
> >> > 406 >>> bam = Bam.instance()
> >> > 407 >>> bam == Bar.instance()
> >> > 408 True
> >> > 409 """
> >> > 410 # Create and save the instance
> >> > 411 if cls._instance is None:
> >> > --> 412 inst = cls(*args, **kwargs)
> >> > inst = undefined
> >> > cls = <class
> 'sage.repl.interpreter.SageTerminalInteractiveShell'>
> >> > args = ()
> >> > kwargs = {'ipython_dir': u'/home/lmiller/.ipython',
> 'profile_dir': <IPython.core.profiledir.ProfileDir object at
> 0x7f76806b4d50>, 'config': {'InteractiveShell': {'term_title': True,
> 'colors': 'LightBG', 'confirm_exit': False, 'prompts_class': <class
> 'sage.repl.prompts.SagePrompts'>, 'separate_in': '',
> 'ast_node_interactivity': 'all', 'simple_prompt': False},
> 'InteractiveShellApp': {'extensions': ['sage']}, 'TerminalIPythonApp':
> {'shell_class': <class
> 'sage.repl.interpreter.SageTerminalInteractiveShell'>, 'display_banner':
> False, 'test_shell': False, 'verbose_crash': True}, 'SageTerminalApp':
> {'force_interact': True}}, 'parent': <sage.repl.interpreter.SageTerminalApp
> object at 0x7f76836e7150>}
> >> > 413 # Now make sure that the instance will also be
> returned by
> >> > 414 # parent classes' _instance attribute.
> >> > 415 for subclass in cls._walk_mro():
> >> > 416 subclass._instance = inst
> >> > 417
> >> > 418 if isinstance(cls._instance, cls):
> >> > 419 return cls._instance
> >> > 420 else:
> >> > 421 raise MultipleInstanceError(
> >> > 422 'Multiple incompatible subclass instances of
> '
> >> > 423 '%s are being created.' % cls.__name__
> >> > 424 )
> >> > 425
> >> > 426 @classmethod
> >> > 427 def initialized(cls):
> >> >
> >> >
> /usr/lib/python2.7/dist-packages/IPython/terminal/interactiveshell.pyc in
> __init__(self=<sage.repl.interpreter.SageTerminalInteractiveShell object>,
> *args=(), **kwargs={'config': {'InteractiveShell': {'term_title': True,
> 'color...ue}, 'SageTerminalApp': {'force_interact': True}}, 'ipython_dir':
> u'/home/lmiller/.ipython', 'parent': <sage.repl.interpreter.SageTerminalApp
> object>, 'profile_dir': <IPython.core.profiledir.ProfileDir object>})
> >> > 423
> >> > 424 def init_alias(self):
> >> > 425 # The parent class defines aliases that can be safely
> used with any
> >> > 426 # frontend.
> >> > 427 super(TerminalInteractiveShell, self).init_alias()
> >> > 428
> >> > 429 # Now define aliases that only make sense on the
> terminal, because they
> >> > 430 # need direct access to the console in a way that we
> can't emulate in
> >> > 431 # GUI or web frontend
> >> > 432 if os.name == 'posix':
> >> > 433 for cmd in ['clear', 'more', 'less', 'man']:
> >> > 434 self.alias_manager.soft_define_alias(cmd,
> cmd)
> >> > 435
> >> > 436
> >> > 437 def __init__(self, *args, **kwargs):
> >> > --> 438 super(TerminalInteractiveShell, self).__init__(*args,
> **kwargs)
> >> > global super = undefined
> >> > global TerminalInteractiveShell = <class
> 'IPython.terminal.interactiveshell.TerminalInteractiveShell'>
> >> > self.__init__ = <bound method
> SageTerminalInteractiveShell.__init__ of
> <sage.repl.interpreter.SageTerminalInteractiveShell object at
> 0x7f76806b4910>>
> >> > args = ()
> >> > kwargs = {'profile_dir': <IPython.core.profiledir.ProfileDir
> object at 0x7f76806b4d50>, 'config': {'InteractiveShell': {'term_title':
> True, 'colors': 'LightBG', 'confirm_exit': False, 'prompts_class': <class
> 'sage.repl.prompts.SagePrompts'>, 'separate_in': '',
> 'ast_node_interactivity': 'all', 'simple_prompt': False},
> 'InteractiveShellApp': {'extensions': ['sage']}, 'TerminalIPythonApp':
> {'shell_class': <class
> 'sage.repl.interpreter.SageTerminalInteractiveShell'>, 'display_banner':
> False, 'test_shell': False, 'verbose_crash': True}, 'SageTerminalApp':
> {'force_interact': True}}, 'ipython_dir': u'/home/lmiller/.ipython',
> 'parent': <sage.repl.interpreter.SageTerminalApp object at 0x7f76836e7150>}
> >> > 439 self.init_prompt_toolkit_cli()
> >> > 440 self.init_term_title()
> >> > 441 self.keep_running = True
> >> > 442
> >> > 443 self.debugger_history = InMemoryHistory()
> >> > 444
> >> > 445 def ask_exit(self):
> >> > 446 self.keep_running = False
> >> > 447
> >> > 448 rl_next_input = None
> >> > 449
> >> > 450 def pre_prompt(self):
> >> > 451 if self.rl_next_input:
> >> > 452 # We can't set the buffer here, because it will
> be reset just after
> >> > 453 # this. Adding a callable to pre_run_callables
> does what we need
> >> >
> >> > /usr/lib/python2.7/dist-packages/IPython/core/interactiveshell.pyc in
> __init__(self=<sage.repl.interpreter.SageTerminalInteractiveShell object>,
> ipython_dir=u'/home/lmiller/.ipython',
> profile_dir=<IPython.core.profiledir.ProfileDir object>, user_module=None,
> user_ns=None, custom_exceptions=((), None), **kwargs={'config':
> {'InteractiveShell': {'term_title': True, 'color...ue}, 'SageTerminalApp':
> {'force_interact': True}}, 'parent': <sage.repl.interpreter.SageTerminalApp
> object>})
> >> > 488 self.init_builtins()
> >> > 489
> >> > 490 # The following was in post_config_initialization
> >> > 491 self.init_inspector()
> >> > 492 if py3compat.PY3:
> >> > 493 self.raw_input_original = input
> >> > 494 else:
> >> > 495 self.raw_input_original = raw_input
> >> > 496 self.init_completer()
> >> > 497 # TODO: init_io() needs to happen before
> init_traceback handlers
> >> > 498 # because the traceback handlers hardcode the
> stdout/stderr streams.
> >> > 499 # This logic in in debugger.Pdb and should eventually
> be changed.
> >> > 500 self.init_io()
> >> > 501 self.init_traceback_handlers(custom_exceptions)
> >> > 502 self.init_prompts()
> >> > --> 503 self.init_display_formatter()
> >> > self.init_display_formatter = <bound method
> SageTerminalInteractiveShell.init_display_formatter of
> <sage.repl.interpreter.SageTerminalInteractiveShell object at
> 0x7f76806b4910>>
> >> > 504 self.init_display_pub()
> >> > 505 self.init_data_pub()
> >> > 506 self.init_displayhook()
> >> > 507 self.init_magics()
> >> > 508 self.init_alias()
> >> > 509 self.init_logstart()
> >> > 510 self.init_pdb()
> >> > 511 self.init_extension_manager()
> >> > 512 self.init_payload()
> >> > 513 self.init_deprecation_warnings()
> >> > 514 self.hooks.late_startup_hook()
> >> > 515 self.events.trigger('shell_initialized', self)
> >> > 516 atexit.register(self.atexit_operations)
> >> > 517
> >> > 518 def get_ipython(self):
> >> >
> >> > /usr/lib/python2.7/dist-packages/sage/repl/interpreter.pyc in
> init_display_formatter(self=<sage.repl.interpreter.SageTerminalInteractiveShell
>
> object>)
> >> > 245
> >> > 246 sage: from sage.repl.interpreter import
> SageTerminalInteractiveShell
> >> > 247 sage: SageTerminalInteractiveShell() # not tested
> >> > 248 <sage.repl.interpreter.SageNotebookInteractiveShell
> object at 0x...>
> >> > 249 """
> >> > 250
> >> > 251 def init_display_formatter(self):
> >> > 252 """
> >> > 253 Switch to the Sage IPython commandline rich output
> backend
> >> > 254
> >> > 255 EXAMPLES::
> >> > 256
> >> > 257 sage: from sage.repl.interpreter import
> SageTerminalInteractiveShell
> >> > 258 sage:
> SageTerminalInteractiveShell().init_display_formatter() # not tested
> >> > 259 """
> >> > --> 260 from sage.repl.rich_output.backend_ipython import
> BackendIPythonCommandline
> >> > global sage.repl.rich_output.backend_ipython = undefined
> >> > BackendIPythonCommandline = undefined
> >> > 261 backend = BackendIPythonCommandline()
> >> > 262 backend.get_display_manager().switch_backend(backend,
> shell=self)
> >> > 263
> >> > 264
> >> > 265 class SageTestShell(SageShellOverride,
> TerminalInteractiveShell):
> >> > 266 """
> >> > 267 Test Shell
> >> > 268
> >> > 269 Care must be taken in these doctests to quit the test
> shell in
> >> > 270 order to switch back the rich output display backend to
> the
> >> > 271 doctest backend.
> >> > 272
> >> > 273 EXAMPLES::
> >> > 274
> >> > 275 sage: from sage.repl.interpreter import
> get_test_shell
> >> >
> >> > /usr/lib/python2.7/dist-packages/sage/repl/rich_output/__init__.py in
> <module>()
> >> > 1 # -*- encoding: utf-8 -*-
> >> > 2
> >> > ----> 3 from .display_manager import get_display_manager
> >> > global display_manager = undefined
> >> > global get_display_manager = undefined
> >> > 4 from .pretty_print import pretty_print
> >> > 5
> >> > 6
> >> >
> >> >
> /usr/lib/python2.7/dist-packages/sage/repl/rich_output/display_manager.py
> in <module>()
> >> > 24 The Sage display manager using the doctest backend
> >> > 25 """
> >> > 26
> >> > 27
> #*****************************************************************************
>
>
> >> > 28 # Copyright (C) 2015 Volker Braun <vbrau...@gmail.com>
> >> > 29 #
> >> > 30 # Distributed under the terms of the GNU General Public
> License (GPL)
> >> > 31 # as published by the Free Software Foundation; either
> version 2 of
> >> > 32 # the License, or (at your option) any later version.
> >> > 33 # http://www.gnu.org/licenses/
> >> > 34
> #*****************************************************************************
>
>
> >> > 35
> >> > 36
> >> > 37 import warnings
> >> > 38
> >> > ---> 39 from sage.structure.sage_object import SageObject
> >> > global sage.structure.sage_object = undefined
> >> > global SageObject = undefined
> >> > 40 from sage.repl.rich_output.output_basic import (
> >> > 41 OutputPlainText, OutputAsciiArt, OutputUnicodeArt,
> OutputLatex,
> >> > 42 )
> >> > 43 from sage.repl.rich_output.preferences import
> DisplayPreferences
> >> > 44
> >> > 45
> >> > 46 class DisplayException(Exception):
> >> > 47 """
> >> > 48 Base exception for all rich output-related exceptions.
> >> > 49
> >> > 50 EXAMPLES::
> >> > 51
> >> > 52 sage: from sage.repl.rich_output.display_manager
> import DisplayException
> >> > 53 sage: raise DisplayException('foo')
> >> > 54 Traceback (most recent call last):
> >> >
> >> > ImportError: No module named sage_object
> >> >
> >> >
> ***************************************************************************
> >> >
> >> > --
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