Hi,
I am aligning to fasta DB of sequences and would like to count
The number of reads to each fasta entry by header names.
How do I designate to bowtie to store the names in the SAM
File and then use samtool to count them?
Lana Schaffer
The Scripps Research Institute
Biostatistics, Informatics
DNA Array Core Facility
858-784-2263
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