Hello,
The current tool testing options provided by Galaxy are excellent for
verifying that Galaxy is functioning properly and that tools provide
reproducible results.
However, I believe there are two related shortcomings to the current
Galaxy approach, and I would like to propose a solution for
Uploaded data from Biomart and the data is displayed correctly in the middle
pane.
I deleted all datasets in the history except the first one (a fastq file), and
it now displays correctly too!
I upload a fasta file: it does not display.
Could this be a bug with fasta data?
Isabelle
--
Isabell
Hello,
Running galaxy-cloud latest release on amazon EC2, configuration out of the box
except for:
host = 0.0.0.0
I can upload data, run tools, but when I click on the 'eye' icon to view the
data , the middle panel is empty (accessing galaxy cloud from Firefox and
Chrome on CentOS linux).
I t
Hi George,
Thanks to your suggestion and work by Nate Coraor, Galaxy now has an IRC
channel:
Server: irc.freenode.net
Channel: #galaxyproject
This is an informal online gathering place for the Galaxy community to post
questions and help each other out.
Note that while IRC is conducive
Hi Curtis,
setup.sh has been removed from the installation process, as discussed in
this thread:
http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-March/004588.html
On Wed, Mar 9, 2011 at 2:12 PM, Curt Palm wrote:
> I just cloned the current release version of galaxy:
>
> hg clone http://bitbuc
I just cloned the current release version of galaxy:
hg clone http://bitbucket.org/galaxy/galaxy-dist
and can not run setup.sh because it is not present in the /galaxy-dist/
directory.
setup.sh is also not listed on the https://bitbucket.org/galaxy/galaxy-dist/src
page,
is this an error o
On Tue, Mar 08, 2011 at 11:15:44PM -0500, Musa A. Hassan wrote:
> Yes I can't get the file into galaxy at all. Am uploading from a file
> path. the file is 35mb.
When you say "uploading from a filepath" are you using the
administrator-only functionality explained here:
https://bitbucket.org/gala
On Wed, Mar 9, 2011 at 10:52 AM, Brad Chapman wrote:
> Shaun and Peter;
>
>> > Hi, I really like the new feature to show dataset information and
>> > parameters
>> > used to run the tool. Problem is that the link doesn't always work. It
>> > seems
>> > as though the first time I open a history a
Shaun and Peter;
> > Hi, I really like the new feature to show dataset information and parameters
> > used to run the tool. Problem is that the link doesn't always work. It seems
> > as though the first time I open a history and click the "i" the information
> > is displayed in the main screen, bu
On Wed, Mar 9, 2011 at 10:19 AM, SHAUN WEBB wrote:
>
> Hi, I really like the new feature to show dataset information and parameters
> used to run the tool. Problem is that the link doesn't always work. It seems
> as though the first time I open a history and click the "i" the information
> is disp
Hi, I really like the new feature to show dataset information and
parameters used to run the tool. Problem is that the link doesn't
always work. It seems as though the first time I open a history and
click the "i" the information is displayed in the main screen, but
after that none of the
Hi,
since making the last update I have found some new warnings in my
paster.log, it also seems as though the galaxy process starts to
gather memory and eventually hang (35% of 64G memory).
I've posted the entries below.
If anyone could help me understand what is going on that would be g
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