Hi,
On Galaxy d05bf67aefa6+ (stable) tip
If I go to:
Admin:Server:View data tables registry,
I get:
Internal Server Error
with the following log:
#
URL: https://galaxy.tamu.edu/admin/view_tool_data_tables
File
'/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py',
Hi,
Regarding the error I experienced with
[galaxy-dev] Error running oasesoptimizer rev. 53e887dda799
(konradpaszkiewicz) on Galaxy fd4113962c32+ (stable)
Two things:
FIRST
The error I reported, in short, it was my fault as I failed to to set up the:
cmdline =
'/usr/local/galaxy/bioinfos
It worked like a charm
Thanks
--R
On Fri, Aug 9, 2013 at 12:32 PM, Nate Coraor wrote:
>
> On Aug 9, 2013, at 1:16 PM, Rodolfo Aramayo wrote:
>
>> Dear Nate,
>>
>> Thanks
>>
>> Just to be sure I understand this correctly
>>
>
On Thu, Aug 8, 2013 at 1:31 PM, Nate Coraor wrote:
> On Aug 5, 2013, at 6:23 PM, Rodolfo Aramayo wrote:
>
>> Hi,
>>
>> I have a 80 core/1TB RAM Dell server.
>> In order improve Galaxy performance I modified the universe_wsgi.ini
>> file so as to improve
Attempting to run oasesoptimizer rev. 53e887dda799 (konradpaszkiewicz)
on Galaxy fd4113962c32+ (stable)
I get the following error:
#
error
An error occurred with this dataset: Traceback (most recent call
last): File
"/usr/local/galaxy/bioinfosoft/shed_tools/toolshed.g2.bx.psu.edu/repos/konradp
On Tue, Aug 6, 2013 at 11:41 AM, Peter Cock wrote:
> On Tue, Aug 6, 2013 at 5:30 PM, Rodolfo Aramayo wrote:
>> Dave,
>>
>> It did contain errors as reported by tailing the last part of the
>> INSTALLATION.log
>>
>> Thanks
>>
>> --Rodolfo
&g
You are very welcome
So...what happened??
Thanks
--R
On Tue, Aug 6, 2013 at 9:26 AM, Greg Von Kuster wrote:
> Hello Rodolfo,
>
> The following issue is resolved in 10319:61de03c05cf6 - thank for reporting
> this.
>
> Greg Von Kuster
>
> On Aug 5, 2013, at 3:50 PM
Hi,
I have a 80 core/1TB RAM Dell server.
In order improve Galaxy performance I modified the universe_wsgi.ini
file so as to improve the Scaling and Load Balancing
as follows:
# Use a threadpool for the web server instead of creating a thread for each
# request.
use_threadpool = True
# Number of
tall
>>
>>> 'Deactivate or uninstall' is available, can you try uninstalling again,
>>> and
>>> see if that functions correctly?
>>
>>
>> It worked!
>>
>> Before I was not able to do it as I was getting an ugly galaxy error
7;
> state. What options are available from the popup menu next to the
> ncbi_blast_plus repository on the manage installed repositories page? If
> 'Deactivate or uninstall' is available, can you try uninstalling again, and
> see if that functions correctly?
>
> --Dave
>
> Can you confirm the above?
>
> We further understand that the repository is stuck in the 'installing'
> state. What options are available from the popup menu next to the
> ncbi_blast_plus repository on the manage installed repositories page? If
> 'Deactivat
Dear Peter,
APOLOGIES for the delayed response
Please see below for details..
On Thu, Aug 1, 2013 at 8:51 AM, Peter Cock wrote:
> On Thu, Aug 1, 2013 at 2:47 PM, Rodolfo Aramayo wrote:
>> On Thu, Aug 1, 2013 at 8:40 AM, Peter Cock wrote:
>>>>>
>>>>>
On Thu, Aug 1, 2013 at 8:40 AM, Peter Cock wrote:
> On Thu, Aug 1, 2013 at 1:41 PM, Rodolfo Aramayo wrote:
>> On Thu, Aug 1, 2013 at 6:49 AM, Peter Cock wrote:
>>> On Thu, Aug 1, 2013 at 12:38 PM, Rodolfo Aramayo wrote:
>>>> People,
>>>>
>>>
On Thu, Aug 1, 2013 at 6:49 AM, Peter Cock wrote:
> On Thu, Aug 1, 2013 at 12:38 PM, Rodolfo Aramayo wrote:
>> People,
>>
>> I successfully installed NCBI_Blast_Plus from the toolshed
>> The tool, however, failed to work giving the following error:
>>
>>
People,
I successfully installed NCBI_Blast_Plus from the toolshed
The tool, however, failed to work giving the following error:
Fatal error: Exit code 255 ()
Error: NCBI C++ Exception:
"/usr/local/galaxy/galaxy-dist/database/tmp/tmpwL5OFq/ncbi-blast-2.2.26+-src/c++/src/corelib/ncbiobj.cpp",
Hi,
I starting getting this error since late galaxy update
I get data from UCSC Main (local), but when I click "display at UCSC main"
I get:
Not Found
The requested URL /cgi-bin-root/hgTracks was not found on this server.
Please help
Thanks
--R
Hi,
As Admin, I uploaded a set of files from filesystems paths
Uploading is successful but when I try to make the datasets public I get
the following error:
Internal Server Error
Galaxy was unable to sucessfully complete your request <==By The
Way...NOTE how sucessfully is misspelled!!
URL:
ht
Hi,
I hope this is the right place to ask,
I am trying to rsync from:
rsync -avzP rsync://datacache.g2.bx.psu.edu/indexes/
and I am getting the error:
@ERROR: chroot failed
rsync error: error starting client-server protocol (code 5) at main.c(1534)
[Receiver=3.0.9
I know I can rsync to any ot
Hi,
We are in the process of deploying a small Galaxy server here at Texas
A&M University
I am a GNU/Linux kind of guy
My IT people want to use an SMB-mounted drive share as a backup destination
I am concerned that this might impact the performance of the server as
in my mind the equation is as fo
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