Re: [HCP-Users] Subject 101107: different brain mask for rfMRI_REST1_LR and rfMRI_REST1_RL?

2016-12-16 Thread Glasser, Matthew
Check the raw data for that run and see if the head didn't move out of the FOV. Peace, Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Julien Dubois mailto:jcrdub...@gmail.com>> Date: Friday, December 16, 2016 at 1:02 PM To: "hcp-users@humanconnectome.org

Re: [HCP-Users] pconn.nii plot

2016-12-16 Thread Timothy Coalson
wb_view is the only way for workbench to set up how to view that matrix. Load the file, and change the view type to "chart", and select "matrix" for chart type if it isn't already selected. As with any other display in wb_view, you can capture the image with "file->capture image...". Because you

[HCP-Users] Two jobs avail: Data Science and Machine Learning in the NIMH IRP

2016-12-16 Thread Thomas, Adam (NIH/NIMH) [E]
Full details here: https://github.com/nih-fmrif/mlc_job_ad And here:  https://github.com/nih-fmrif/ADS_job_ad HIRING: Machine learning in neuroimaging researcher Who we are: The National Institute of Mental Health (NIMH) is the lead federal agency for research on mental disorders. NIMH is one o

Re: [HCP-Users] data release

2016-12-16 Thread Elam, Jennifer
Hi Chris, We are currently working on finishing up processing for the 1200 Subjects Release (~1100 with image data) and, if all goes well, we plan to release the data in January 2017. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School

[HCP-Users] Subject 101107: different brain mask for rfMRI_REST1_LR and rfMRI_REST1_RL?

2016-12-16 Thread Julien Dubois
Hi, I was just working with some of the HCP volume data and noticed that subject 101107 had a chunk of ventral prefrontal cortex missing in the rfMRI_REST1_LR.nii.gz volume (in MNINonLinear/Results/rfMRI_REST1_LR). Interestingly, the brain mask for rfMRI_REST1_RL.nii.gz seems different (more incl

Re: [HCP-Users] pconn.nii plot

2016-12-16 Thread nailin yao
Hi Tim, I don't quite get it. What I want to do is to plot output_correlation.pconn.nii file as a 180*180 correlation color matrix for viewing . If wb_command can achieve this, may I know the exact wb_command I can use to generate the scene file or image file? Or is there any tabs on wb_view can e

[HCP-Users] data release

2016-12-16 Thread Christopher Weise
Dear HCP team, thanks for all your great work! I was wondering if you have a time i mind for the next data new release (S1200)? Cheers Chris ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp

Re: [HCP-Users] group comparison

2016-12-16 Thread nailin yao
Thank you MH! That's exactly what I want to know. Best, Nailin 2016-12-15 16:20 GMT-05:00 Harms, Michael : > > Hi, > Please keep the exchange on the HCP-Users list, so that responses can be > captured as part of the thread on the list. > > Anderson can confirm, but I believe that if you are supp