Hi everybody,
does anyone know if the bayesian version of Pagels 94 Method of correlated
binary traits is implemented in R somewhere?
There is the corHMM package which implements a 3-state ML version of it, but I
couldn’t find a Baysian version anywhere.
So I search for a Bayesian version of a
Hi Franz,
It is implemented in BayesTraits (
http://www.evolution.rdg.ac.uk/BayesTraits.html).
I know it's not R, and it's a command line based program, so might take a
while to get used to, but BayesTraits is really powerful (and it's
Bayesian!)
thanks,
Manabu
On 14 June 2016 at 09:58, mailbox
Hi Manabu,
thanks for that!
I can see the discrete model allows 2 binaries. There is no implementation of a
3 binaries model as a pendant to corDISC, I guess?!
Cheers,
Franz
> Am 14.06.2016 um 11:17 schrieb Manabu Sakamoto :
>
> Hi Franz,
>
> It is implemented in BayesTraits
> (http://www.
Hi Franz,
You should be able to use the multistate option
Manabu
On 14 June 2016 at 10:21, mailbox Franz wrote:
> Hi Manabu,
>
> thanks for that!
> I can see the discrete model allows 2 binaries. There is no implementation
> of a 3 binaries model as a pendant to corDISC, I guess?!
>
> Cheers,
Hi all,
I am trying to attach bootstrap values to a small tree (just 4 taxa). plotBS()
in the phangorn package gives me the following error:
tree <- plotBS(phylotree,bstrees,type="phylogram",p=90)
Error in if (drop[j]) next : missing value where TRUE/FALSE needed
This error disappears and ev
HI Kamilla,
can you send me your code and data and what phangorn version are you using?
Cheers,
Klaus
On Tue, Jun 14, 2016 at 6:42 PM, Kamila Naxerova
wrote:
> Hi all,
>
> I am trying to attach bootstrap values to a small tree (just 4 taxa).
> plotBS() in the phangorn package gives me the follow