[COOT] CentOS 6 Screenshot
Hello Everyone, When we run coot (0.8.2) on our CentOS 6_x64 systems and attempt DRAW=Screenshot=povray or raster3d we get an error similar to the following. We are using the latest build for CentOS 6_x64. The latest build for CentOS 5_x64 works fine on our CentOS 5 systems. Systems use the same NVIDIA graphics (K600) and driver version (340.32) CentOS 6_x64 error: ((safe_scheme_command) Error in proc: key: system-error args: (execlp ~A (No such file or directory) (2))) coot-bin: Fatal IO error 0 (Success) on X server :0.0. Gdk-ERROR **: The program 'coot-bin' received an X Window System error. This probably reflects a bug in the program. The error was 'BadGC (invalid GC parameter)'. (Details: serial 10420 error_code 13 request_code 60 minor_code 0) (Note to programmers: normally, X errors are reported asynchronously; that is, you will receive the error a while after causing it. To debug your program, run it with the --sync command line option to change this behavior. You can then get a meaningful backtrace from your debugger if you break on the gdk_x_error() function.) aborting... /home/dgb/coot/bin/coot: line 273: 28394 Aborted (core dumped) $coot_bin $@ ERROR: In procedure dynamic-link: ERROR: file: libguilegtk-2.0, message: file not found Any help, comments ideas would be appreciated. Thanks, Douglas Bailey NCI-Frederick 1050 Boyles Street Frederick, Maryland 21702 Ph: 301-846-5328 Fax: 301-846-6322 baile...@mail.nih.gov
Re: [COOT] CentOS 6 Screenshot
Dear Douglas Bailey, the last line says ERROR: file: libguilegtk-2.0, message: file not found did you try to install the rpm that contains the library? The 'BadGC' message sounds more lie X-Server error, sometimes due to a mismatch between a kernel module and the X11-driver. It may help to reboot the computer while ensuring that all modules are up to date with respect to the kernel. Best, Tim On 04/07/2015 07:47 PM, Bailey, Douglas (NIH/NCI) [E] wrote: Hello Everyone, When we run coot (0.8.2) on our CentOS 6_x64 systems and attempt DRAW=Screenshot=povray or raster3d we get an error similar to the following. We are using the latest build for CentOS 6_x64. The latest build for CentOS 5_x64 works fine on our CentOS 5 systems. Systems use the same NVIDIA graphics (K600) and driver version (340.32) CentOS 6_x64 error: ((safe_scheme_command) Error in proc: key: system-error args: (execlp ~A (No such file or directory) (2))) coot-bin: Fatal IO error 0 (Success) on X server :0.0. Gdk-ERROR **: The program 'coot-bin' received an X Window System error. This probably reflects a bug in the program. The error was 'BadGC (invalid GC parameter)'. (Details: serial 10420 error_code 13 request_code 60 minor_code 0) (Note to programmers: normally, X errors are reported asynchronously; that is, you will receive the error a while after causing it. To debug your program, run it with the --sync command line option to change this behavior. You can then get a meaningful backtrace from your debugger if you break on the gdk_x_error() function.) aborting... /home/dgb/coot/bin/coot: line 273: 28394 Aborted (core dumped) $coot_bin $@ ERROR: In procedure dynamic-link: ERROR: file: libguilegtk-2.0, message: file not found Any help, comments ideas would be appreciated. Thanks, Douglas Bailey NCI-Frederick 1050 Boyles Street Frederick, Maryland 21702 Ph: 301-846-5328 Fax: 301-846-6322 baile...@mail.nih.gov -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A signature.asc Description: OpenPGP digital signature
Re: [COOT] CentOS 6 Screenshot
Is this really an X error, or can coot not find the executables for povray or raster3d? execlp [1] seems to complain that it can't find files, which may feed back to Guile Gtk that there is an error with a similar phenotype to an X error. [1] : http://unixhelp.ed.ac.uk/CGI/man-cgi?execlp+3 Are povray and raster3d in your $PATH? Just a thought. Mark On 7 Apr 2015, at 13:47, Bailey, Douglas (NIH/NCI) [E] baile...@mail.nih.gov wrote: Hello Everyone, When we run coot (0.8.2) on our CentOS 6_x64 systems and attempt DRAW=Screenshot=povray or raster3d we get an error similar to the following. We are using the latest build for CentOS 6_x64. The latest build for CentOS 5_x64 works fine on our CentOS 5 systems. Systems use the same NVIDIA graphics (K600) and driver version (340.32) CentOS 6_x64 error: ((safe_scheme_command) Error in proc: key: system-error args: (execlp ~A (No such file or directory) (2))) coot-bin: Fatal IO error 0 (Success) on X server :0.0. Gdk-ERROR **: The program 'coot-bin' received an X Window System error. This probably reflects a bug in the program. The error was 'BadGC (invalid GC parameter)'. (Details: serial 10420 error_code 13 request_code 60 minor_code 0) (Note to programmers: normally, X errors are reported asynchronously; that is, you will receive the error a while after causing it. To debug your program, run it with the --sync command line option to change this behavior. You can then get a meaningful backtrace from your debugger if you break on the gdk_x_error() function.) aborting... /home/dgb/coot/bin/coot: line 273: 28394 Aborted (core dumped) $coot_bin $@ ERROR: In procedure dynamic-link: ERROR: file: libguilegtk-2.0, message: file not found Any help, comments ideas would be appreciated. Thanks, Douglas Bailey NCI-Frederick 1050 Boyles Street Frederick, Maryland 21702 Ph: 301-846-5328 Fax: 301-846-6322 baile...@mail.nih.gov
