Re: [Dspace-tech] One handle server for two DSpace instances?

2013-06-04 Thread helix84
Hi Nikolai,

I sent you the code in a separate email.

Peter, I'd like to discuss this with you, e.g. around the DevMtg time
tomorrow, if possible.


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Re: [Dspace-tech] How "bi_private" table and sequence are missing?

2013-06-03 Thread helix84
On Mon, Jun 3, 2013 at 2:49 PM, LifeH2O  wrote:
> Got it! Thank you @helix :) Also can we run index-init anytime? or it is used
> only one time after installation. We have enough data after upgrade.

You can run it at any time, just remember that you need to stop Tomcat
to run index-init. index-init can take a long time to run, from dozens
of minutes up to hours, depending on the number of your items and
quantity of metadata.

In case anything goes wrong, you can keep a backup of your current
copy of the index, which is in [dspace]/search/. Remember, that it
must correspond to your index configuration in dspace.cfg (if you
didn't customize it, you're fine).

There's an advanced trick you can use to reduce downtime - make a
clone of your DSpace installation (especially pay attention to the
mentioned browse index configuration) and do the indexing on this
clone, while the live instance is running. When the indexing is
complete, copy over the [dspace]/search/ directory to the production
instance, which should result in a much shorter downtime. Then run
index-update to add any new or changed items in the production
instance to the index (since the copy was made).

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Re: [Dspace-tech] How "bi_private" table and sequence are missing?

2013-06-03 Thread helix84
On Mon, Jun 3, 2013 at 1:06 PM, LifeH2O  wrote:
> We didn't find code to create "bi_private" in who DSpace source code. Why???
> Also this code should have been added in upgrade scripts. How "bi_private"
> table is created???

I'm not certain about the particular bi_private table and sequence,
but all the other browse index (bi_*) tables are created by running
index-init. They're not part of the static schema because they depend
on what browse indices you have declared in your configuratation.

You can find more information about reindexing including command line
flags here:
https://wiki.duraspace.org/display/DSDOC3x/ReIndexing%20Content%20(for%20Browse%20or%20Search)


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Re: [Dspace-tech] DSpace v3.1 and Postgres v9?

2013-06-03 Thread helix84
Hi Michael,

I answered this question here:

https://wiki.duraspace.org/display/DSDOC3x/Installation?focusedCommentId=34637101#comment-34637101

In short - you're free to try, I wouldn't expect any problems. If you
do, please report back. When we have enough confirmations, we'll add
it as a recommended version.


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Re: [Dspace-tech] Harvesting OAI-ORE via XMLUI interface (v2)

2013-06-03 Thread helix84
On Sat, Jun 1, 2013 at 4:56 AM, Nemiz, Elvi  wrote:
> I tried harvesting from demo.dspace.org and I also got the same error. I
> successfully harvested content from http://scholar.sun.ac.za/ although the
> identifier is broken.

Hi Elvi,

OAI on demo works for me (listing the full contents without
restrictions), worked for me even when you sent your email. What exact
query did you use? I assume you used some time period restriction
because that's what the known issue is about.


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Re: [Dspace-tech] Dspace Query

2013-06-03 Thread helix84
On Mon, Jun 3, 2013 at 5:25 AM, DASADIYA CHAITANYA
 wrote:
> Plz tell me what is the maven version for Dspace 1.8.2 

Hello Dasadiya,

this is described in the official documentation for your version of DSpace:

https://wiki.duraspace.org/display/DSDOC18/Installation#Installation-ApacheMaven2.2.xorhigher(Javabuildtool)


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Re: [Dspace-tech] Export Metadata Produces Duplicate Fields

2013-05-31 Thread helix84
On Thu, May 30, 2013 at 4:56 PM, Martin Courtois  wrote:
> Any idea why this occurring?

Hi Marty,

this is occurring because the exporter distinguishes between fields
where the language is NULL and where the language is an empty string
(""). There is really no reason why DSpace should treat these two
cases differently, so you can consider this a bug. Different
import/submission methods use different value for "no language".
In addition, you could also get specific columns for different
languages, if you fill them in (e.g. dc.title[en_US]).

> Is it ok to combine values into a single field?

Yes, it's completely harmless.


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Re: [Dspace-tech] Automatic DSpace Backup

2013-05-31 Thread helix84
Hello,

simply take the commands you're running manually and run them from
cron. This really isn't DSpace-specific, but you can find examples of
some other DSpace cron jobs here:
https://wiki.duraspace.org/display/DSDOC3x/Installation#Installation-%27cron%27Jobs


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Re: [Dspace-tech] Viewing DRI in submission workflow

2013-05-31 Thread helix84
Just noting that /DRI/ doesn't seem to work, either:

http://demo.dspace.org/xmlui/DRI/submit/606d578d15026d0a4a7a51322a051b24573f7235.continue


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Re: [Dspace-tech] Increase in lo Traffic Since 3.1 Upgrade

2013-05-31 Thread helix84
On Fri, May 31, 2013 at 10:59 AM, Sean Carte  wrote:
> I suppose I need to shut down tomcat and see if this continues, but this is
> a production server. If I were to firewall off all ports above 5000 on the
> lo interface, this should not have any impact on DSpace? I tried that and
> couldn't access the site.

5432 is postgres...


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Re: [Dspace-tech] Increase in lo Traffic Since 3.1 Upgrade

2013-05-31 Thread helix84
Hi Sean,

DSpace 3.1 is just a bugfix relase for 3.0, so that's hardly the
source of the increase. It will be something else you did while doing
the upgrade. Perhaps you started using either Discovery or the new
OAI.

Most importantly, DSpace uses the loopback interface to communicate
with Solr, which contains three cores: statistics (Solr statistics
since about 1.6), search (Discovery since 1.7 for XMLUI, optional for
3.0 JSPUI) and oai (OAI since 3.0). You can tell the Solr traffic
apart from your AJP (mod_proxy) traffic by port - Solr is listening on
8080 by default, while AJP is listening on 8009 by default.


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Re: [Dspace-tech] dspace database export as rdf

2013-05-28 Thread helix84
Hi Nikolaos,

a few miscellaneous observations:

I think your paper should also be linked here as it gives more details:
http://www.cn.ntua.gr/~nkons/r2rml_parser-2013_post_peer-review.pdf

Personally, I don't know what I would use this for, but I have a
question - would it make sense to prepare this repository in form of a
DSpace addon? Yet another optional interface, much like dspace-lni or
dspace-rest.

I didn't read the source, but I didn't see any configuration file, so
it's not obvious to me how you configure the database connection and
whether both Postgres and Oracle are supported.

There's a missing Examples link here:
https://github.com/nkons/r2rml-parser/wiki


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Re: [Dspace-tech] MIMETYPE in item-list

2013-05-28 Thread helix84
On Tue, May 28, 2013 at 3:44 PM, helix84  wrote:

>
> https://github.com/DSpace/DSpace/blob/dspace-3.1/dspace-xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-list.xsl#L259
>

Here's an example what you could put on that line:




It's really the same thing as in the itemSummaryView-DIM template in
item-view.xsl, just remove the "./mets:fileSec/" part.


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Re: [Dspace-tech] MIMETYPE in item-list

2013-05-28 Thread helix84
Nevermind, I see your point. I'll try to propose a solution.


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Re: [Dspace-tech] MIMETYPE in item-list

2013-05-28 Thread helix84
Hi Jamie,

Have you tried modifying it here?

https://github.com/DSpace/DSpace/blob/dspace-3.1/dspace-xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-list.xsl#L259


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Re: [Dspace-tech] Complete auto-import

2013-05-28 Thread helix84
Check the value of your "upload.temp.dir" configuration property and make
sure the user your Tomcat runs under has the permission to write there.


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Re: [Dspace-tech] Edit template item for a comunity

2013-05-28 Thread helix84
Hi Karolayne,

questions about collection templates seem to be a trend at the moment.

On Tue, May 28, 2013 at 2:54 PM, Karol Braun  wrote:

> I need to create a specific metadata template for all collections of a
> community, does anyone know how I can do?
>

You can't do that from the DSpace interface. DSpace can create one
collection template for each collection for you.

However, I see no reason why you couldn't do this using SQL, because the
template is just a normal item, so you could create it once and then just
add a reference to it for each collection where you want to use it.

Look at the "template_item_id" column of the "collection" table. This
should point to the "item_id" of a template item for that collection. That
template item would have the metadata values you need pre-filled. Please,
bear in mind that I never actually tried it and don't try it without doing
a full database backup first.


> I've tried to edit the item template in the web interface, but the
> metadata fields remain the same when I do a new submission.
>

All I can say is that I tried it and it works. When you log in as admin, go
to the collection, and create (or edit) the template, you can make a list
of fields and their values that will be prefilled. Then, when you submit to
that collection, you should see the fields pre-filled in th submission
forms.

In case it doesn't work, try also looking at the log to see if there are
any errors at that time.


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Re: [Dspace-tech] Edith metadata's collection

2013-05-28 Thread helix84
On Tue, May 28, 2013 at 12:38 PM, Miguel Angel Robledo <
marobl...@santafe.gov.ar> wrote:

> Generally, I follow the procedure you describe " In XMLUI, when you go to
> a collection, select Edit Collection, there's a button to create an Item
> template at the bottom." But now i need do this in various collections and
> therefore I would like to do this in batches.
>
> Your suggestion to use "Batch Metadata Editor" is not applicable because
> it only allows to edit metadata of items but not metadata of collections
> and then I should run it periodically to be applied to new items in the
> collection.
>

I'd still recommend doing it manually unless you have over a hundred such
collections.

However, if you do have such a large number, look at the "template_item_id"
column of the "collection" table. This should point to the "item_id" of a
template item for that collection. That template item would have the
metadata values you need pre-filled. Please, bear in mind that I never
actually tried it and don't try it without doing a full database backup
first.


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Re: [Dspace-tech] Settin a document type for a particular collection

2013-05-28 Thread helix84
On Tue, May 28, 2013 at 11:10 AM, rémi Asare wrote:

> I'm using Dspace 3.1 and i was wondering if there is any possibility to
> set a document type for a particular collection. For instance i have a
> "Thesis" collection in which i often put thesis, and it is kind of
> bothersome and time consuming to choose for every submission "Thesis" as
> document type. Thanks in advance.
>

I think this should be possible using collection templates, but I never
tried it. Try looking at the Input Form section here:

https://sites.google.com/a/ohiolink.edu/drmc/documentation/single-item-submission


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Re: [Dspace-tech] Create a new field

2013-05-28 Thread helix84
On Tue, May 28, 2013 at 1:33 PM, rémi Asare  wrote:

> Normally, when you are submitting a new item to a collection, you are only
> given one field for authors where you can put as many as you want. All
> these authors are by defaut "dc.contributor.author". How can i add a new
> field "dc.contributor.advisor"?
>

Hi Rémi,

assuming you have already added the new field into DSpace, the following
page describes how to alter the input forms:

https://wiki.duraspace.org/display/DSPACE/Alter+submission+input+forms


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Re: [Dspace-tech] Complete auto-import

2013-05-28 Thread helix84
Hi Miguel,

yes, content exported that way can also be easily imported. The following
page details both export and import and all related aspects:

https://wiki.duraspace.org/display/DSDOC3x/AIP+Backup+and+Restore


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Re: [Dspace-tech] AIP package as SIP

2013-05-28 Thread helix84
On Tue, May 28, 2013 at 12:09 PM, Moisés Álvarez wrote:

> So I'm looking to use AIP profile packages to generate collections and
> items, I've read in DSpace documentation that AIP is only oriented to
> backup and restore DSpace existing elements and I'm not sure if AIP can
> be used this way to generate new content.
>

Hi Moisés,

yes, AIP can certainly used this way to generate new content.

If you want to go the REST API route, please be advised that several
different REST API implementations are currently available outside of
official DSpace as addons and it's not yet clear which implementation will
be chosen and incuded as the official one. However, one will most probably
be in DSpace 4.0.

Feel free to ask any particular questions if you have any.


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~~helix84

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Re: [Dspace-tech] Email configuration

2013-05-28 Thread helix84
On Tue, May 28, 2013 at 10:38 AM, Ibrahim Bounhas
wrote:

> mail.extraproperties = mail.smtp.socketFactory.port=465, \
> mail.smtp.starttls.enable=true, \
> mail.smtp.socketFactory.class=javax.net.ssl.SSLSocketFactory, \
> mail.smtp.socketFactory.fallback=false
>

I see a mistake here. Remove this part:
mail.smtp.starttls.enable=true, \

The recommended documentation for setting up DSpace with GMail SMTP is here:

http://blog.stuartlewis.com/2009/09/05/using-gmail-with-dspace/

Then use the test-email script to verify whether it works. If it doesn't
send us the full output of test-email.


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Re: [Dspace-tech] thumbnails to pdf

2013-05-28 Thread helix84
On Tue, May 28, 2013 at 10:15 AM, Webshet, Sisay (ILRI) 
wrote:
> Or I want to hide the thumbnails info like ( Files  SizeFormat
 ViewDescription)
> But I want the thumbnails to be linkable to pdf file

https://github.com/DSpace/DSpace/blob/dspace-3.1/dspace-xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl#L40

To hide the "Files in this item" section, remove the xsl:choose block.

Adding the JPG thumbnail image linking to the PDF file is easy, just add
the following code to the top of the template:










    


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Re: [Dspace-tech] thumbnails to pdf

2013-05-28 Thread helix84
Hi Sisay,

I'm not sure what you mean. I have found most items in your repository
have only JPG files, but I may have been looking at wrong items.
Better show us in screenshots of both World Bank and ILRI.


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Re: [Dspace-tech] Items problem

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 10:41 PM, Luis Rojas C. (CATIE)
 wrote:
> My first question is whether in dspace 3.1 all are private collections. How
> to make them public?

All collections are public by default.

> My other point, when I see a record and I click, it displays information
> about that file.

Is there a question?


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Re: [Dspace-tech] SS attached - Re: how to disable download form communities and collection for unregistered users

2013-05-27 Thread helix84
On Tue, May 28, 2013 at 6:17 AM,   wrote:
> See the attachment. This is what I enter. But when I give find, it shows 41 
> (ID=42).

You need to type 12345678/42 to the Handle field (NOT 42 to the
Internal ID field).


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Re: [Dspace-tech] Edith metadata's collection

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 6:50 PM, Miguel Angel Robledo
 wrote:
> The procedure described in XMLUI is that I do usually to create the item
> template that metadata are associated to each new item. Because there are
> several collections to be created is intended to do this in batches.
>
> I do not use because I need Batch Metadata editor with every new associate
> that metadata element because that it should run periodically.

I'm sorry, but I don't understand your sentence structure. Perhaps
also send it in Spanish.


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Re: [Dspace-tech] [Dspace-general] Excel to Dspace in 3.1 version - More than 20 records

2013-05-27 Thread helix84
Please, always reply to the dspace-tech mailing list, not directly to me.

DSpace has several export options. For the purpose of migrating a
whole repository (even with the structure) I think it would be best to
use AIP. There are many options for what it can do for you, so make
sure to read the documentation thoroughly:

https://wiki.duraspace.org/display/DSDOC3x/AIP+Backup+and+Restore


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~~helix84

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On Mon, May 27, 2013 at 6:21 PM, C. Sugumaran C  wrote:
> Thank you
> Now it is working.
>
>
> One more requirement.
> Three persons are having the Dspace database in Windows XP OS
> All the three are already having full text bitstream
> I would like to combine these three database into one in another computer,
> which is also a windows xp OS.
>
> When I exported into excel and imported into another computer, I got only
> the metadata.
>
> So,
> I would like to know, is it possible to export with bitstream to another
> computer through excel ?
>
> Please help me, so that most of my  subordinate data input work will be
> reduced.
>
> If it is not possible through excel,
>
> Is it possible to use back up - restore method (Pl. send the corresponding
> link for details).  In that case, is it possible to combine 3 or more
> database with same structure
>
> Plese give your suggestions.
>
>
> C. Sugumaran
> Scientist / Engr 'SF'
> Documentation Officer
>  Liquid Propulsion Systems Centre
> INDIAN SPACE RESEARCH ORGANISATION
> VALIAMALA - 695 547
> TRIVANDRUM
> PHONE : 0471- 2567 678 (O),
> FAX : 0471 - 2567841 (pp)  -
> EMAIL -
> c_suguma...@hotmail.com ;
> c_suguma...@yahoo.co.in ;
> c_suguma...@lpsc.gov.in
>
>
>
>> From: heli...@centrum.sk
>> Date: Mon, 27 May 2013 17:55:57 +0200
>
>> Subject: Re: [Dspace-general] Excel to Dspace in 3.1 version - More than
>> 20 records
>> To: c_suguma...@hotmail.com
>> CC: dspace-tech@lists.sourceforge.net
>
>>
>> The problem is that you didn't uncomment the property:
>>
>> # gui-item-limit = 120
>>
>> This is what it must look like:
>>
>> gui-item-limit = 120
>>
>> Then restart Tomcat.
>>
>> But for large files, it's preferable to use the command-line version
>> because with the web interface the HTML pages showing differences can
>> get very large and take a long time to display.
>>
>>
>> Regards,
>> ~~helix84
>>
>> Compulsory reading: DSpace Mailing List Etiquette
>> https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette
>>
>>
>> On Mon, May 27, 2013 at 5:50 PM, C. Sugumaran C 
>> wrote:
>> > I have corrected in 'dspace' only and not in 'dspace-source'
>> >
>> > I have changed 20 into 120
>> > I have restarted tomcat service also.
>> > and imported 100 records,
>> >
>> > I got a error message - which the screen shot is attached
>> > Attached the edited bulkedit.cfg file for you reference.
>> >
>> > Pl remail me, where I am doing mistake
>> >
>> >
>> >
>> >
>> > C. Sugumaran
>> > Scientist / Engr 'SF'
>> > Documentation Officer
>> > Liquid Propulsion Systems Centre
>> > INDIAN SPACE RESEARCH ORGANISATION
>> > VALIAMALA - 695 547
>> > TRIVANDRUM
>> > PHONE : 0471- 2567 678 (O),
>> > FAX : 0471 - 2567841 (pp) -
>> > EMAIL -
>> > c_suguma...@hotmail.com ;
>> > c_suguma...@yahoo.co.in ;
>> > c_suguma...@lpsc.gov.in
>> >
>> >
>> >
>> >> From: heli...@centrum.sk
>> >> Date: Mon, 27 May 2013 16:27:40 +0200
>> >> Subject: Re: [Dspace-general] Excel to Dspace in 3.1 version - More
>> >> than
>> >> 20 records
>> >> To: c_suguma...@hotmail.com
>> >> CC: dspace-gene...@lists.sourceforge.net
>> >
>> >>
>> >> The limit applies only to the web interface. Since you say you edited
>> >> the configuration, it seems you also have access to the server. You
>> >> can use the command line interface which has no such limits:
>> >>
>> >> https://wiki.duraspace.org/display/DSDOC3x/Batch+Metadata+Editing
>> >>
>> >>
>> >> Regarding why changing the GUI limit option is not working for you -
>> >> that's strange.
>> >> 1) Did you restart Tomcat after you changed it?
>> >> 2) Did you change it in [dspace-source] or in [dspace]?
>> >>
>> >>
>> >> Regards,
>> >> ~~helix84
>> >>
>> >> Compulsory reading: DSpace Mailing List Etiquette
>> >> https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette

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Re: [Dspace-tech] [Dspace-general] Excel to Dspace in 3.1 version - More than 20 records

2013-05-27 Thread helix84
The problem is that you didn't uncomment the property:

# gui-item-limit = 120

This is what it must look like:

gui-item-limit = 120

Then restart Tomcat.

But for large files, it's preferable to use the command-line version
because with the web interface the HTML pages showing differences can
get very large and take a long time to display.


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
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On Mon, May 27, 2013 at 5:50 PM, C. Sugumaran C  wrote:
> I have corrected in 'dspace' only and not in 'dspace-source'
>
> I have changed 20 into 120
> I have restarted tomcat service also.
> and imported 100 records,
>
> I got a error message - which the screen shot is  attached
> Attached the edited bulkedit.cfg file for you reference.
>
> Pl remail me, where I am doing mistake
>
>
>
>
> C. Sugumaran
> Scientist / Engr 'SF'
> Documentation Officer
>  Liquid Propulsion Systems Centre
> INDIAN SPACE RESEARCH ORGANISATION
> VALIAMALA - 695 547
> TRIVANDRUM
> PHONE : 0471- 2567 678 (O),
> FAX : 0471 - 2567841 (pp)  -
> EMAIL -
> c_suguma...@hotmail.com ;
> c_suguma...@yahoo.co.in ;
> c_suguma...@lpsc.gov.in
>
>
>
>> From: heli...@centrum.sk
>> Date: Mon, 27 May 2013 16:27:40 +0200
>> Subject: Re: [Dspace-general] Excel to Dspace in 3.1 version - More than
>> 20 records
>> To: c_suguma...@hotmail.com
>> CC: dspace-gene...@lists.sourceforge.net
>
>>
>> The limit applies only to the web interface. Since you say you edited
>> the configuration, it seems you also have access to the server. You
>> can use the command line interface which has no such limits:
>>
>> https://wiki.duraspace.org/display/DSDOC3x/Batch+Metadata+Editing
>>
>>
>> Regarding why changing the GUI limit option is not working for you -
>> that's strange.
>> 1) Did you restart Tomcat after you changed it?
>> 2) Did you change it in [dspace-source] or in [dspace]?
>>
>>
>> Regards,
>> ~~helix84
>>
>> Compulsory reading: DSpace Mailing List Etiquette
>> https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette

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Re: [Dspace-tech] Edith metadata's collection

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 3:25 PM, Miguel Angel Robledo
 wrote:
> I need to edit metadata through a collection of items. By XMLUI I create a
> collection and edit a element's template with common metadata ... is
> possible to apply this process in batches?

In XMLUI, when you go to a collection, select Edit Collection, there's
a button to create an Item template at the bottom. That should be what
you're asking about, but I personally haven't used it.

Why don't you use the Batch Metadata Editor as I suggested? I think
that's much less work.


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Re: [Dspace-tech] Change permissions in batch

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 3:21 PM, Miguel Angel Robledo
 wrote:
> I need to apply it to a number of collections and their associated's
> elements. I understand that I must do it by SQL because XMLUI only applies
> to the collection for new items.

No, there must be something you misunderstood.

It's true that collection permissions apply only to new items.

However, the wildcard policy admin tools is able to change access
policies on all exising items or bitstreams in a specified collection.

So I think you can use it. It's safer than SQL. But let us know if you
still think it doesn't do what you want.


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Re: [Dspace-tech] Moving image and bitstream up

2013-05-27 Thread helix84
https://github.com/DSpace/DSpace/blob/dspace-3.1/dspace-xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl#L40

In the itemSummaryView-DIM, move the first three lines down to the end
of the template.


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Re: [Dspace-tech] Returning a taken task back to Pool?

2013-05-27 Thread helix84
Workflow is an area I have almost no experience with. But if you want to
look around in the database, look at the *workflowitem* and
*workspaceitem*tables. You'll be interested in the
*item_id* and *owner* columns. To look up *item_id* by title, you can do
SELECT item_id, textvalue FROM metadatavalue WHERE textvalue = 'Your Item
Title'. *owner* will have a value corresponding to *eperson_id*, which you
can look up in the *eperson* table.

Don't forget to make backup of your database before doing any changes!


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Re: [Dspace-tech] SS attached - Re: how to disable download form communities and collection for unregistered users

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 1:52 PM,   wrote:
> See the attachment. When I search for id 42, it shows 41 (ID = 42)..Not sure 
> why it is so.

You sent me this one before. See screenshot - you need to type
12345678/42 to the handle field (NOT 42 to the Internal ID field).


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Re: [Dspace-tech] Column preview thumbnails

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 11:56 AM, cotanio  wrote:
> I just saw that the permissions of the collection is anonymous read access.
> Therefore, it seems that the problem is not that. The classes that I
> mentioned earlier have no change from the default versions. Any idea?

Sorry, I'm not sure what the problem might be. You'll probably need to
go through the source to find it. If you discover a bug, please, file
it in Jira, but you should also verify that it does also occur in the
latest version.

Other things you could look at:
Try the same thing on DSpace 3.1 at demo.dspace.org.
Do .jpg thumbanils work?
Do you have webui.browse.thumbnail.maxwidth and
webui.browse.thumbnail.maxheight set?
Do filtered thumbnails work (when you put an image into ORIGINAL and
run filter-media)?


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~~helix84

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Re: [Dspace-tech] Returning a taken task back to Pool?

2013-05-27 Thread helix84
Hi Michael,

before we dig into SQL, does this help?

http://dspace.2283337.n4.nabble.com/Authorizations-and-Workflow-Steps-tp4656873p4656898.html


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Re: [Dspace-tech] SS attached - Re: how to disable download form communities and collection for unregistered users

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 12:08 PM,   wrote:
> Pls find the attached screenshots..Item#44 asks for uname/pwd while trying to 
> download while Item#42 doesn't.

You sent me the screenshots for items 123456789/44 and 123456789/41,
which both require passwords. So I can't see the difference there.
Please, send me the screenshot also for 123456789/42 so that I can
compare it to one of those you sent me.

This is the current situation:

123456789/44 password
123456789/42 no password
123456789/41 password

Please, note, that handle (123456789/41) is not the same as item_id (ID=42).

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Re: [Dspace-tech] how to disable download form communities and collection for unregistered users

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 11:23 AM,   wrote:
> I am working from jspui admin login. I searched for an item in 2007 
> collection and gave its same permission for an item in 2012 collection - but 
> still same issue.

Send either a link to the 2007 and 2012 items or screenshots of the
authorizations screen for both items.


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Re: [Dspace-tech] Moving image and bitstream up

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 11:02 AM, Webshet, Sisay (ILRI)
 wrote:
> however I want to bring the image and bitsream to the top of the page.

The whole "Files in this item" section or just one of the bitstreams.
If so, which one?


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Re: [Dspace-tech] how to disable download form communities and collection for unregistered users

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 10:34 AM,   wrote:
> I have the Anonymous READ access for the 2012 collection. Also, I checked an 
> item in 2007 collection and gave the same permission for an item in 2012 
> collection...but issue is still the same.

OK, I should have been more specific. Check the item's *bitstream*
Anonymous READ policy.

This is what you want to remove:
http://i.imgur.com/atDVDu9.png


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Re: [Dspace-tech] Column preview thumbnails

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 10:10 AM, cotanio  wrote:
> I ran this task without result. Filter media used to create thumbnails of the
> original bundle, but what I have in the collection is the bundle thumbnail.
> Therefore items have no associated bitstream. The items have metadata
> only.The thumbnail should appear automatically when I launch ItemImport and
> put in the file contents: *imagen.png bundle: THUMBNAIL*. Can be an issue
> related to user permissions to view thumbnails? Is there any option in the
> file dspace.cfg need to change?

OK, I understand now. The thumbnail should be displayed if the file in
the THUMBNAIL bundle has Anonymous READ access - can you verify that?

In case it doesn't (I think Anonymous READ would be the default), you
should try to add it manually. If it works, you can add it for all
items using the wildcard policy admin tool.
Also, here's how you can specify permissions during item import:
http://dspace.2283337.n4.nabble.com/Bundle-permissions-on-batch-imports-tp4204952p4212226.html


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Re: [Dspace-tech] how to disable download form communities and collection for unregistered users

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 10:14 AM,   wrote:
> What should I do in "Advanced Policy Manager" ? What kind of permission 
> should I give?

Well, first, you need to identify whether this is the problem. Did you
remove the Anonymous READ policy from your 2012 collection after it
already had items in it? In that case they will still have Anonymous
READ access, because items inherit collection policies only during
submission.

After you verified that the items still have Anonymous READ access,
you will use the wildcard tools to remove it. Compare and contrast
access policies on your 2007 and 2012 items (not collections) if you
want them to be the same.


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Re: [Dspace-tech] Fwd: [Dspace-devel] Item state definitions

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 9:52 AM, Andrea Bollini  wrote:
> As I haven't received yet any feedback or comment I'm trying to get more 
> visibility on the tech list.
> Please note that imho it is very important for the consistent of the DSpace 
> data model that we all agree about standard scope and usage of item state.


 Hi Andrea,

I think the reason you didn't get feedback is that you're describing
how things should work, while it's not completely clear how it differs
from how things currently work. To get feedback, you should describe
the status quo, why it is not ideal and propose a change.

For example, I notice that no interface except XMLUI currently doesn't
respects the "discoverable" attribute (the private state). It's clear
that this is a problem. So the proposal should say whether we should
add support to all other interfaces or wait for a more final solution
and what that would be.

I know this is a lot of work and I appreciate you started looking into
it, thank you.


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Re: [Dspace-tech] Connection refused.

2013-05-27 Thread helix84
Use the manual procedure (for older versions of DSpace) for clearing
the Cocoon cache as described here:

https://wiki.duraspace.org/display/DSPACE/TechnicalFaq#TechnicalFaq-ClearingCocoon(XMLUI)cache


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Re: [Dspace-tech] how to disable download form communities and collection for unregistered users

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 8:20 AM,   wrote:
> If you are talking about the "Collection's Authorizations", I have it done - 
> both 2007 and 2012 collections have the same permissions.

This is a likely source of error:

https://wiki.duraspace.org/display/DSPACE/TechnicalFaq#TechnicalFaq-Ichangedaccessrestrictionsonacollection,butrestrictionsdidn'tchangeonitsitems

> But when I try to access and download the 2012 journal I get only the below 
> log:

That's only a consequence of not having access to the bitstream.


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Re: [Dspace-tech] Dspace Index not created.

2013-05-27 Thread helix84
On Mon, May 27, 2013 at 6:40 AM, onkar rai  wrote:
> I installed Dspace successfully but the problem in when i submitted any file
> in collection its index is not created. I am sending the dspace.cfg file
> kindly suggest me where am I lacking.

As I asked before, you need to send the full error message you got
while running ant fresh_install.


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Re: [Dspace-tech] SMTP Authentication failed

2013-05-26 Thread helix84
On Sun, May 26, 2013 at 3:17 PM, Alan Orth  wrote:
> I will comment on the Jira bug.  I'm not sure how DSpace releases go, but is
> this type of fix a candidate for 3.1.x or 3.2?

Glad to hear that.

I'm actually on the fence with this one - in a certain aspect it is a
fix, but it changes the past behaviour, which also brings potential to
break a corner case. There is still the possibility that sending empty
username and password serves a purpose, I just don't know about it.

Since DSpace 3 the release numbering actually changed and 3.2 would be
the next bugfix release and 4.0 will be the next major release.

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Re: [Dspace-tech] SMTP Authentication failed

2013-05-25 Thread helix84
On Sat, May 25, 2013 at 12:54 PM, Alan Orth  wrote:
> Thanks for doing that for me.  I'll make sure to keep an eye on DS-1561.

I maked you as the reporter and added the issue to your watchlist, so
you will receive any updates to that issue.

I'll try to prepare a fix when I can get to it.


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Re: [Dspace-tech] SMTP Authentication failed

2013-05-25 Thread helix84
https://jira.duraspace.org/browse/DS-1561


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Re: [Dspace-tech] Edith metadata's collection

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 5:52 PM, Miguel Angel Robledo
 wrote:
> I need to associate a serie of metadata to some collections empty. Can i
> do this by command line? Because i need to do this over a large group of
> collections.

Hi Miguel,

if you would like to create many new items containing metadata and no
bitstreams, it's actually very easy to do this using Batch Metadata
Editing. See the official documentation [1] and a nice tutorial [2].

[1] https://wiki.duraspace.org/display/DSDOC3x/Batch+Metadata+Editing
[2] https://kb.osu.edu/dspace/handle/1811/47279


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Re: [Dspace-tech] Change permissions in batch

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 5:44 PM, Miguel Angel Robledo
 wrote:
> I need to change the access restrictions to a number of elements in a
> collection. The permissions must be changed from a users group to
> anonymous, Can i do this in batches?

Hi Miguel,

the easiest way to do this on a whole collection is to use the
Advanced Policy Manager (wildcard policy admin tool). In XMLUI, log in
as an administrator. In the Administrative menu, click Authorizations
(under Access Control.) Then in the main pane, under the search box,
there's a link to the tool (Advanced authorizations tool: Click here
to go to the item wildcard policy admin tool).

You could do this in two steps:
1) adding the anonymous READ access to all items in the specified collection
2) removing READ access from a particular group from all items in the
specified collection (strictly speaking, this is not necessary, but it
is "cleaner")

If you have more complex needs (e.g. you need to specify a set of
items, not a complete collection), then it's quite easy to do this
using SQL. If this is what you need, feel free to ask for details (and
specify what you need).


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Re: [Dspace-tech] LDAP group

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 3:08 PM, Webshet, Sisay (ILRI)
 wrote:
> Is there a  possibility of creating more than one group (login.specialgroup)
> who log into LDAP
>
> For Dsapce 3.1

Yes, this functionality has been added in DSpace 3. See the
login.groupmap option in documentation:

https://wiki.duraspace.org/display/DSDOC3x/Authentication+Plugins#AuthenticationPlugins-ConfiguringLDAPAuthentication


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Re: [Dspace-tech] Restricting navigation elements to admin users

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 2:56 PM, Benjamin Ryan
 wrote:
> Thanks, do you know of any good docs or tutorials on this area as I 
> have not used the sitemap.xml files much as yet.

Just google for "cocoon sitemap". It's not DSpace-specific.


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[Dspace-tech] setting "shmmax" in Linux will not be necessary anymore starting with Postgres 9.3

2013-05-24 Thread helix84
Hi fellow DSpace admins,

I just wanted to notify you that setting "shmmax" in Linux will not be
necessary anymore starting with Postgres 9.3, as explained in the
following article in the "No more shmmax" chapter:

http://lwn.net/Articles/550418/

It will be one less step to worry about.


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Re: [Dspace-tech] Unable to register as new user

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 2:52 PM, SanjibKumarDeka  wrote:
> Should I replace that port with 465, as written in the following part,

No, just comment it out. Follow Stuart's post. It's verified to work.
Use test-email to quickly test the configuration without needing to
restart dspace. Once it works in test-email, you can restart.

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Re: [Dspace-tech] Column preview thumbnails

2013-05-24 Thread helix84
Hi Cotanio,

have you run "[dspace]/bin/dspace filter-media"?


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Re: [Dspace-tech] Unable to register as new user

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 2:28 PM, SanjibKumarDeka  wrote:
> I have already gone through the Stuart's post and set as per the instructions.

No, you haven't. Stuart's post doesn't say anything about setting port
to 25, because a different port is used and set elsewhere. But you
still have in your configuration:

mail.server.port = 25

Here you can see your DSpace trying to connect to port 25, which is wrong:

> Error sending email:
>  - Error: javax.mail.MessagingException: Could not connect to SMTP host: 
> smtp.gmail.com, port: 25;


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Re: [Dspace-tech] What are the options for restricting the display of the login box for embargoed files

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 2:00 PM, Evans, Kev 
wrote:
> We use: dc.rights.embargodate
>   dc.right.embargoreason

OK, turned out I can't easily find out the metadata value from the login
page. So here's a simplified version that hides the form if any reason is
shown (reason is not shown if you click the login link directly):







    


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Re: [Dspace-tech] What are the options for restricting the display of the login box for embargoed files

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 1:55 PM, Evans, Kev  wrote:
> We have DSPace V. 1.8.2 so I'm assumimg 1.6 embargo.

The metadata field is essential to know.


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Re: [Dspace-tech] What are the options for restricting the display of the login box for embargoed files

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 12:56 PM, Evans, Kev  wrote:
> The question here is how can you tell apart:
> a) when the user is denied access due to not being logged in (in which case 
> the login box should be displayed); and
> b) when the user is denied access due to embargo (in which case you don't 
> want to display the login box)
>
> Yes, this is our dilemma. We can't tell them apart; but in our repository 
> everyone has view access unless embargoed. Therefore only Administrators 
> should have access. In which case they can login via the My Account panel we 
> have on the right hand navigation.

Makes sense.

> Do you still use the original 1.6 embargo as opposed to simplified
> embargo introduced in DSpace 3? In that case which metadata field
> stores the information that there is/isn't an embargo?

So?


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Re: [Dspace-tech] Restricting navigation elements to admin users

2013-05-24 Thread helix84
Hi Ben,

yes, it could be possible, but I'd expect some limitations because
this works on the URL matching layer.

As an example, see how Elastic Search Statistics behaves differently
depending on whether the user is in the specified group (which is
allowed access) or not:

https://github.com/DSpace/DSpace/blob/dspace-3.1/dspace-xmlui/src/main/resources/aspects/StatisticsElasticSearch/sitemap.xmap#L51

https://github.com/DSpace/DSpace/blob/dspace-3.1/dspace-xmlui/src/main/java/org/dspace/app/xmlui/aspect/statisticsElasticSearch/SpecifiedGroupAuthenticatedSelector.java


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Re: [Dspace-tech] What are the options for restricting the display of the login box for embargoed files

2013-05-24 Thread helix84
Only to explain why the current implementation makes sense: we don't
know what kind if credentials you want to enter before displaying the
login box and therefore we can't predict whether you'll have access
after login or not. As an example case - you can always use the login
box to log in as the administrator and you will be given access to the
file.


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Re: [Dspace-tech] What are the options for restricting the display of the login box for embargoed files

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 12:19 PM, Evans, Kev  wrote:
> We want to display the message when users click on the bitstream but NOT the 
> login box. And despite the message (we have edited telling them they do not 
> have access to the file - due to embargo) they still  attempt to login. Hence 
> creating frustrated users!
>
> Hope this makes sense.

Yes, now it does.

The question here is how can you tell apart:
a) when the user is denied access due to not being logged in (in which
case the login box should be displayed); and
b) when the user is denied access due to embargo (in which case you
don't want to display the login box)

Do you still use the original 1.6 embargo as opposed to simplified
embargo introduced in DSpace 3? In that case which metadata field
stores the information that there is/isn't an embargo?


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Re: [Dspace-tech] What are the possible data format export options in Dspace?

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 12:21 PM, Evans, Kev  wrote:
> Yes this is the kind of duplication, although only using one language [en]

These are inconsistencies in your user data - you should have your own
policy whether you always use a language code for a certain field or
not.

The inconsistency between NULL and empty string is DSpace's fault
because different processes (submission/edit/import methods) are not
consistent in what they put in by default. Sorry about that, we should
fix it, it's just low priority.

Anyway, the Batch Metadata Editor makes it extremely easy to move data
between these columns, and re-import them. Moving a data value from
the dc.title[] column to dc.title and leaving the value under
dc.title[] empty will do what you'd expect - create a new metadata
value with NULL language and get rid of the metadata value with empty
string as language.


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Re: [Dspace-tech] What are the possible data format export options in Dspace?

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 11:53 AM, Evans, Kev  wrote:
> But when call it from the WebUI, the fields are replicated multiple times.

You didn't write which fields, so I'm guessing you hit a common issue.
DSpace treats field names as distinct based on what is specified as
language. Say you're using two languages in your repository, en and
de, then you can have fields with the following language variations
and here's an example how the would be displayed in the CSV header:
field language - column header for dc.title
en - dc.title[en]
de - dc.title[de]
empty string - dc.title[]
NULL - dc.title

Is this the kind of duplication you're seeing?


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Re: [Dspace-tech] What are the options for restricting the display of the login box for embargoed files

2013-05-24 Thread helix84
On Fri, May 24, 2013 at 9:56 AM, Evans, Kev  wrote:
> That's the process as it stands
>
> But, we have a request to not show the login box box at step 1)

So what's supposed to happen? You want to stop displaying the link to
the bitstream if the user doesn't have access to it? Or stop
displaying that bitstream altogether? You hardly wrote anything, so
you're letting me guess.


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Re: [Dspace-tech] What are the options for restricting the display of the login box for embargoed files

2013-05-23 Thread helix84
On Thu, May 23, 2013 at 5:03 PM, Evans, Kev  wrote:
> Dspace Version. 1.8.2
> Theme: xmlui

I'll assume the default Mirage theme.

The process normally looks like this:

1) click on an embargoed bitstream, get the following prompt:
The file is restricted
The file you are attempting to access is a restricted file and
requires credentials to view. Please login below to access the file.
Sign in to DSpace

2) sign in to dspace as a non-administrative user

3) get the following message:
This bitstream is restricted
You do not have the credentials to access the restricted bitstream

This seems pretty straight-forward to me. I'm not sure how you'd like
to make it clearer.

Anyway, I added a new feature that appears in DSpace 3 that shows a
lock icon for bitstreams that have restricted access (missing
Anonymous READ). Since you're on 1.8, you have 2 options if you want
this feature:
1) upgrade to DSpace 3
2) apply my patch from this Jira ticket (it's compatible with 1.8):
https://jira.duraspace.org/browse/DS-1193

There's a screenshot attached to that ticket showing what it looks like.


If I misunderstood and you wanted something else, please explain.


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Re: [Dspace-tech] Displaying specific bundles

2013-05-23 Thread helix84
You're doing some weird things here. I made a patch for you instead.

I think you got confused by the complicated structure of the already
existing theme. Next time, try to gut the stuff you don't need and
rewrite what you need in a simpler way - you'll save time and learn
something along the way.


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item-view_preservation.diff
Description: Binary data
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Re: [Dspace-tech] iRODS support in DSpace

2013-05-23 Thread helix84
On Thu, May 23, 2013 at 11:28 PM, Harish Maringanti  wrote:
> Has anyone used registration option in DSpace -
> https://wiki.duraspace.org/display/DSPACE/DspaceSrbIntegration ? Am just
> wondering how dependent that is on the specific protocol (srb, irods ?).

I can confirm that registration works with local filesystem storage,
but I don't have any experience with SRB.

For relevant code you may want to look here:
https://github.com/DSpace/DSpace/blob/dspace-3.1/dspace-api/src/main/java/org/dspace/storage/bitstore/BitstreamStorageManager.java#L442


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Re: [Dspace-tech] What are the options for restricting the display of the login box for embargoed files

2013-05-23 Thread helix84
On Thu, May 23, 2013 at 3:59 PM, Evans, Kev  wrote:
> What are the options for restricting the display of the login box for
> embargoed files. We have altered the messages but users are still trying to
> login to restricted files. Where can this be changed? i.e. in template.xsl.

Hi Kev,

which DSpace version and theme?


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Re: [Dspace-tech] To restrict usage of submitted items

2013-05-23 Thread helix84
On Thu, May 23, 2013 at 1:25 PM, SanjibKumarDeka  wrote:
> Sorry for this confusing post. Yes, I'm talking about access restrictions
> features like, printing/ copying of any format documents.

In that case, this has nothing to do with DSpace, but with the
document authoring software (e.g. Adobe Acrobat or another PDF
printer) of those specific formats. DSpace has only the responsibility
to deliver or not to deliver you the whole bitstream. It has no effect
on any more granular restrictions afterwards.


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Re: [Dspace-tech] view item only shows collection name

2013-05-23 Thread helix84
Hi Onkar,

please, do not post your questions to existing threads. Start your own
thread for your question.

What is the *exact* message displayed? I tried looking but there is
not message that says literally "index not created".


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Re: [Dspace-tech] To restrict usage of submitted items

2013-05-23 Thread helix84
Hello Sanjib,

I'm sorry, but your question is very confusing. It's unclear what
you're actually asking. It seems you're confusing items and
bitstreams. Do you want to
a) restrict access to items (the page with item metadata)
b) or to bitstreams (so that dspace asks for username and password
when you try to access a bitstream)
c) or are you talking about access restrictions fetures of the PDF
format (disallow printing/copying)?


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Re: [Dspace-tech] Error generated after clicking on feedback

2013-05-23 Thread helix84
On Thu, May 23, 2013 at 12:05 PM, Henry Agbodza
 wrote:
> Error sending email:
>  - Error: javax.mail.MessagingException: Could not connect to SMTP host:
> awdflibrary.org, port: 25;
>   nested exception is:
> java.net.ConnectException: Connection refused

That means your mail.server is wrong, there's no SMTP daemon listening
on port 25 of awdflibrary.org. Contact your local mail server
administrator and ask for your SMTP hostname, port, authentication
method and credentials.


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Re: [Dspace-tech] SMTP Authentication failed

2013-05-23 Thread helix84
OK, here's how I understood it: if you comment out
mail.server.username and mail.server.password, it works, but if you
leave them empty, it doesn't work (presumably because it sends empty
values).

On Thu, May 23, 2013 at 11:20 AM, Alan Orth  wrote:
> If I comment out the mail.* settings in my production.properties file I get
> an error about circular definitions:

Yes, unfortunately, this is a known limitation of the Maven filtering
process as documented here:
https://wiki.duraspace.org/display/DSDOC3x/Configuration#Configuration-Thebuild.propertiesConfigurationPropertiesFile


I guess the the only solution we can provide in DSpace is not to send
username and password if they're both empty.


The relevant code is here:
https://github.com/DSpace/DSpace/blob/dspace-3.1/dspace-api/src/main/java/org/dspace/core/Email.java#L265

It seems to me the code should behave the same (username == null)
regardless of whether mail.server.username is commented out or has an
empty value. But I would need to verify this.


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Re: [Dspace-tech] iRODS support in DSpace

2013-05-22 Thread helix84
You may also want to get in touch with Lucas Gilbert who developed the
iRODS code for DSpace. Optionally to help with forward-porting it,
definitely to help testing it once it's forward-ported.


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Re: [Dspace-tech] iRODS support in DSpace

2013-05-22 Thread helix84
To give more details on the procedure, you should first take a look at
how the customization changed the BitstreamStorageManager class
compared to how that class looked at that time. So you need to look at
the diff of these two contemporary files:

https://github.com/DSpace/DSpace/commit/9ae95a94e79e80eeda99280857b4516734b4135d#dspace-api/src/main/java/org/dspace/storage/bitstore/BitstreamStorageManager.java

https://www.irods.org/dspace/BitstreamStorageManager.java

And port those differences to the file as it looks today:

https://github.com/DSpace/DSpace/blob/master/dspace-api/src/main/java/org/dspace/storage/bitstore/BitstreamStorageManager.java


In addition, the wiki page mentions adding the jargon.jar library as a
dependency. You would do that here:

https://github.com/DSpace/DSpace/blob/master/pom.xml#L443


The dspace.cfg changes are pretty clear.


That's the development part. Then you need to make sure it works in
your environment. Then I can help with the administrative part (GitHub
and Jira) of filing the feature request.


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Re: [Dspace-tech] iRODS support in DSpace

2013-05-22 Thread helix84
On Wed, May 22, 2013 at 11:40 PM, Harish Maringanti  wrote:
> We are thinking about supporting big datasets via dspace and the option of 
> iRODS came up as that is supported in the computer science department here. I 
> found this reference to dspace on irods website - 
> https://www.irods.org/index.php/DSpace but couldn't tell if that code ever 
> made it to dspace.
>
> I saw some SRB options in dspace.cfg but no reference to irods. Has anyone 
> integrated irods with dspace ?

Yes, SRB has been a part of DSpace for a long time.
But iRODS has never been officially proposed, there's nothing in our
issue tracker:

https://jira.duraspace.org/secure/IssueNavigator.jspa?reset=true&jqlQuery=project+%3D+DS+AND+%28summary+~+iRODS+OR+description+~+iRODS+OR+comment+~+iRODS%29

If you're interested in picking it up and submitting it to DSpace (so
that it would be integrated in the next released version), you should
create such feature request in our Jira:

https://jira.duraspace.org/browse/DS

And creating a GitHub pull request against our latest code (master
branch) in GitHub:

https://github.com/DSpace/DSpace

Since hardly anyone has access to an iRODS infrastructure, I think an
exception could be made with regards to the required amount of testing
a feature must get before being accepted as long as it works for you
and is not specific for your institution.

The obvious benefit for you from submitting the feature to DSpace as
opposed to maintaining it as a local customization would be that after
it's accepted, you don't have to maintain that custom code locally
(starting from your upgrade to the version of DSpace that would
contain it).

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Re: [Dspace-tech] Submission in collection

2013-05-22 Thread helix84
On Wed, May 22, 2013 at 11:44 PM, Luis Rojas C. (CATIE) <
luisro...@catie.ac.cr> wrote:
> Hi Lighton, thanks for your response. Hoe i créate a invisible comunity?

You don't. You just don't display it. Here's a very rough example (where
you would replace comm with coll).

Here's how you hide the community list from the front page:


  
  


Here's how you display the number of items (strength) in a community
(assuming you're using Discovery):




 [
http://localhost:8080/solr/search/select/?q=location.comm:85+AND+search.resourcetype:2&version=2.2&start=0&rows=0&indent=on&facet=true')/response/result[@numFound]/@numFound"/>
]




With that template ready, you simply add this static list of communities
(or, in your case, top-level collections) to [dspace]/config/news-xmlui.xml

xyz.intro.headxyz.intro.p.1
  http://example.com/handle/123456789/1";>xyz.intro.li.1
  http://example.com/handle/123456789/2";>xyz.intro.li.2
  http://example.com/handle/123456789/3";>xyz.intro.li.3xyz.intro.p.2


This should be enough to get you started.


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Re: [Dspace-tech] What are the possible data format export options in Dspace?

2013-05-22 Thread helix84
On Wed, May 22, 2013 at 3:03 PM, Evans, Kev  wrote:
> I notice there is a GUI option. When enabled what should I expect to see? Is 
> it in the context menu? Or a specific uri?

That means you can also do it from web UI. if you log in as admin in
XMLUI, you can find it un der Administrative - Import Metadata. But
when called from web UI, it is subject to the limit set here:

https://github.com/DSpace/DSpace/blob/dspace-3.1/dspace/config/modules/bulkedit.cfg#L19


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Re: [Dspace-tech] Error generated after clicking on feedback

2013-05-22 Thread helix84
On Wed, May 22, 2013 at 12:33 PM, Henry Agbodza
 wrote:
> I had this error after clicking on the Feedback link.
> I'm using Dspace 3.1 and the mirage theme.
> java.lang.StringIndexOutOfBoundsException: String index out of range: -1

That means you don't have mail.allowed.referrers set correctly in dspace.cfg.

We're aware that the error message should be more helpful and have
filed it as a bug.
https://jira.duraspace.org/browse/DS-1467


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Re: [Dspace-tech] Internal server error while doing keyword search

2013-05-22 Thread helix84
OK, try this:

1) stop Tomcat
2) mv /home/dspace/search /home/dspace/search.bak
3) mkdir /home/dspace/search
4) /home/dspace/bin/dspace index-init -r -v
5) start Tomcat


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Re: [Dspace-tech] Internal server error while doing keyword search

2013-05-22 Thread helix84
On Wed, May 22, 2013 at 10:54 AM,   wrote:
> root@itlab:/home/dspace/log# java -cp
/home/dspace/lib/lucene-core-2.3.0.jar-ea:org.apache.lucene...
org.apache.lucene.index.CheckIndex /home/dspace/search/ -fix

There should be a space before -ea. Here's the full command for you:

java -cp /home/dspace/lib/lucene-core-2.3.0.jar -ea:org.apache.lucene...
org.apache.lucene.index.CheckIndex /home/dspace/search/ -fix


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Re: [Dspace-tech] Internal server error while doing keyword search

2013-05-22 Thread helix84
That means that the error is also triggered when indexing, not just
when querying the index. Try this to fix the index structure:

java -cp /home/dspace/lib/lucene-core-3.5.0.jar
-ea:org.apache.lucene... org.apache.lucene.index.CheckIndex
/home/dspace/search -fix

This assumes DSpace 3. If you're using an older version, lucene-core
version may also be different.


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Re: [Dspace-tech] Internal server error while doing keyword search

2013-05-22 Thread helix84
Stop Tomcat and run the following command (replace [dspace] with your
DSpace installation directory):

[dspace]/bin/dspace index-init -r -v

Then start Tomcat.


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Re: [Dspace-tech] tomcat shutdown automatically

2013-05-22 Thread helix84
On Wed, May 22, 2013 at 5:36 AM, Ady Wahyudi Paundu  wrote:
> also along the line there is suggestion from Peter Dietz to use
> [dspace]/bin/dspace update-discovery-index -o
> should i use that too?

Yes, it's recommended to run it periodically. Probably daily,
depending on how frequently you update/insert new content.


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Re: [Dspace-tech] Internal server error while doing keyword search

2013-05-22 Thread helix84
On Wed, May 22, 2013 at 8:59 AM,   wrote:
> java.io.IOException: read past EOF
> at 
> org.apache.lucene.store.BufferedIndexInput.refill(BufferedIndexInput.java:146)
> at 
> org.apache.lucene.store.BufferedIndexInput.readByte(BufferedIndexInput.java:38)

Hi Ribin,

it seems like this issue in Lucene:
https://issues.apache.org/jira/browse/LUCENE-2729

> Is it something related to permission issues in any files/folder in the 
> backend? I am running Dspace 1.5.2 in Ubuntu 12.04

Probably not, but it never hurts to run
chown -R [dspace-user]:[dspace-group] [dspace]/search

It seems your lucene index has become corrupted for some reason. It's
no big deal, it can be easily recreated. Stop Tomcat and run
[dspace]/bin/dspace index-init -r -v

This can take a while but the error should go away after you start
Tomcat. If the error ever occurs again, don't hesitate to contact us
and we'll try to investigate further.


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Re: [Dspace-tech] Change the default background color of Mirage Header

2013-05-21 Thread helix84
On Tue, May 21, 2013 at 7:17 PM, Henry Agbodza
 wrote:
> Thanks for the quick response. I have solved it now. The login link at the
> header section still has a white colour.
> How do i change that?

https://github.com/DSpace/DSpace/blob/master/dspace-xmlui/src/main/webapp/themes/Mirage/lib/css/style.css#L86


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Re: [Dspace-tech] Authenticating users without creating EPerson in DB

2013-05-21 Thread helix84
On Tue, May 21, 2013 at 7:33 PM, Patrick West  wrote:
> Will this be part of 1.8? Or 3.1? Or both? (Please say 1.8, please say 1.8,
> or both)

Both 1.8.2 and 3.1 are already released and it's not part of DSpace yet.

However, authentication plugins are probably the easiest custom code
to add because it's just one file you have to add and rebuild DSpace,
then simply point your configuration to it. So you can download the
code from the Jira ticket and try it.

The more people report back, the sooner all the problems will be
resolved and the sooner it gets to DSpace. Next chance is DSpace 4.0
(to be release by the end of this year) if we can get it in by August.


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Re: [Dspace-tech] oai harvest problem. dc:identifier NOT hdl.handle.net

2013-05-21 Thread helix84
On Tue, May 21, 2013 at 9:26 PM, Titus, Gene W
 wrote:
> harvester.acceptedHandleServer = hdl.handle.net,
> digital.library.txstate.edu, library.txstate.edu, txstate.edu
>
> None of these match and I'm creating a new handle for each entry harvested
> and not assigning the dc.identifier.uri to be the dc.identifier
>
> Is it because the dc.identifier from this new site has an https in the
> field?

No, that's not it, the code doesn't look at that part. You can find
the logic here if that helps:

https://github.com/DSpace/DSpace/blob/dspace-1_7_x/dspace-api/src/main/java/org/dspace/harvest/OAIHarvester.java#L605

One more comment I have is that it seems to me that
harvester.acceptedHandleServer values must be separated by a comma
with no space. Anyway, digital.library.txstate.edu is the one you need
to have there (the string is split by slashes - "/" - and it compares
the part between the second and third slash).


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Re: [Dspace-tech] layout broken with only one recent submission

2013-05-21 Thread helix84
On Tue, May 21, 2013 at 6:20 PM, Shawn M. Kiewel  wrote:
> We are using DSpace 3.1, and have found that our layout is broken, but only 
> when there is exactly one recent submission, apparently from an unclosed div 
> tag. Has anyone else run into this problem?
>
> Examples:
>
> 1 recent: http://athenaeum.libs.uga.edu/handle/10724/19496
> multiple: http://athenaeum.libs.uga.edu/handle/10724/18871

This seems to be a problem with some modification you made. As you can
see here, the unmodified Reference theme doesn't have this problem:

http://demo.dspace.org/xmlui/handle/10673/13?themepath=Reference/

It would be quite hard for me to find the problem without the full
source of your theme, because you modified an existing theme. It would
be easy if you had created a new one and would have only overridden
what you need, inheriting the rest from your parent theme.


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Re: [Dspace-tech] Change the default background color of Mirage Header

2013-05-21 Thread helix84
On Tue, May 21, 2013 at 6:20 PM, Henry Agbodza
 wrote:
> Can someone direct me as to how i can change the default background color of
> Mirage theme Header.

Header background:
https://github.com/DSpace/DSpace/blob/master/dspace-xmlui/src/main/webapp/themes/Mirage/lib/css/style.css#L48
Breadcrumb trail:
https://github.com/DSpace/DSpace/blob/master/dspace-xmlui/src/main/webapp/themes/Mirage/lib/css/style.css#L90


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Re: [Dspace-tech] What are the possible data format export options in Dspace?

2013-05-21 Thread helix84
On Tue, May 21, 2013 at 4:47 PM, Evans, Kev  wrote:
> What are the possible data format export options in DSpace?
>
> Are Repository Administrators/Curators  able to easily extract information
> that can be used  to check compliance levels with funder open access
> policies.
>
> For example, I'd like to be able to get the following list:
>
> Author, Title, Date of publication, Funder, Rights etc. exported into Excel?

Hi Kevin,

there are in fact many options how to export data from DSpace. Most
prominently OAI which lets you define many metadata formats, but also
some package-like formats as described in the System Administration
section [1].

Since you're interested in export of particlar metadata fields into
Excel, I'd recommend you to use the Batch Metadata Editing Tool, which
can export a CSV [2] with all the metadata of a specified
site/community/collection/item.

[1] https://wiki.duraspace.org/display/DSDOC3x/DSpace+3.x+Documentation
[2] https://wiki.duraspace.org/display/DSDOC3x/Batch+Metadata+Editing


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Re: [Dspace-tech] SMTP Authentication failed

2013-05-21 Thread helix84
On Tue, May 21, 2013 at 2:08 PM, Alan Orth  wrote:
> Here's the full stack trace, including the "Caused by":
> https://gist.github.com/alanorth/4e942aa252764a3d87aa/raw/2c4a9ad30f537386cc3bb1c9a885204e949038e2/gistfile1.txt

OK, in this case that didn't tell me anything new.


> My mail.* properties from dspace.cfg:

Looks good.


> mail.allowed.referrers = cgspace.cgiar.org

I have localhost here, so try this:
mail.allowed.referrers = localhost, cgspace.cgiar.org

But I don't think this is the issue (the error would be different).


> We did switch to using build.properties (one for
> dev and production) with a common dspace.cfg, though... I will try to
> use our old config file maybe...

This sounds like a likely culprit to me. Make sure you didn't comment
out any properties present in the default build.properties. You have
to leave the value empty instead of commenting it out.


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette

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Re: [Dspace-tech] SMTP Authentication failed

2013-05-21 Thread helix84
Isn't there a "Caused by" line just after the snippet you sent?

I'm baffled why sending email from DSpace wouldn't work when using
test-email works - both use the same send() method of the
org.dspace.core.Email class. The only difference is that one is
launched from command line, the other one from Tomcat.

Can you think of any changes you made between when the email last
worked and now?

Also attach your mail.* properties from dspace.cfg. We're looking for
an inconspicuous problem here.


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
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Re: [Dspace-tech] email alters stops

2013-05-21 Thread helix84
What's the output of "[dspace]/bin/dspace test-email"?


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
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Re: [Dspace-tech] Mirage Customisation

2013-05-21 Thread helix84
What locale are you using? If you have your browser set to request a
different language before English, you have to have those messages in
a messages_XX.xml file where XX is your language code (the same as the
browser sends). You also have to define webui.supported.locales, e.g.:

webui.supported.locales = en, de

The fact that you're seeing the message key
(xmlui.general.dspace_home) instead of the message text means that the
emssage key couldn't be found in the catalog (messages.xml file) that
is currently used.

Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
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Re: [Dspace-tech] Mirage Customisation

2013-05-21 Thread helix84
Hi Henry,

try this:

https://wiki.duraspace.org/display/DSPACE/TechnicalFaq#TechnicalFaq-ClearingCocoon(XMLUI)cache


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
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Re: [Dspace-tech] tomcat shutdown automatically

2013-05-21 Thread helix84
Is there anything in dspace.log at around 12:45? Did the Tomcat process
actually terminate or just stopped serving pages? You could have verified
that by running netstat -tulpn as root and looking whether the port where
Tomcat should be listening (usually 8080 but it depends on your
configuration) appears in the output or not.


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
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