Re: [Fis] The Information Flow

2012-11-13 Thread Bruno Marchal
 they and the
 colleagues at Wuhan are the best situated to try to respond
 institutionally to the above challenge. My special greetings to all
 the Chinese FIS friends!




 - Mensaje original -
 De: Koichiro Matsuno cxq02...@nifty.com
 Fecha: Sábado, 3 de Noviembre de 2012, 6:11 am
 Asunto: Re: [Fis] The Information Flow
 A: fis@listas.unizar.es

 Folks,

Bob U said The foundations, they are trembling! I
 have taken it to imply that propositional
 calculus itself is also in a bad shape. This observation reminds
 me of the hanging paradox first
 invented by an American logician Arthur Prior more than 60 years
 ago. It goes like this:

On a certain Saturday a judge sentenced a man to
 be hanged on Sunday or Monday at noon,
 stipulating at the same time that the man would not know the day
 of his hanging until the morning of
 the day itself. The condemned man argued that if he were hanged
 on Monday, he would be aware of the
 fact by noon on Sunday, and this would contravene the judge's
 stipulation. So the date of his
 hanging would have to be Sunday. Since, however, he had worked
 this out on Saturday, and so knew the
 date of his hanging the day before, the judge's stipulation was
 again contravened. The date,
 therefore, could not be Sunday either. The prisoner concluded
 that he would not be hanged at all.
 However, the official gazette issued on Tuesday reported that
 the man was hanged on last Sunday.

The logician-prisoner (the externalist) was right
 in his deduction upon the trusted propositional
 calculus, while the judge (the internalist) was also right in
 faithfully executing the sentence. But
 both cannot be right at the same time. Despite that, the
 internalist could finally come to preside
 over this empirical world. I had a hard time to convince myself
 of it. Strange?

Cheers,
Koichiro Matsuno




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Re: [Fis] The Information Flow

2012-11-13 Thread Stanley N Salthe
 system,
  it does not matter where and by whom, and little by little expand
  the initial stronghold with the collective support of all of us.
  There is a terrific collection of individualities and scholars in
  the FIS enterprise and the germane entities, so that any small
  oficializing attempt should prosper quite soon.
 
  Let us think about that... there is hope for non-trembling
  foundations! Provided we are institutionally clever.
 
  best wishes
 
  ---Pedro
 
  PS. by the way, I would like to hear in this list from our
  flamboyant Beijing FIS Group, as without discussion they and the
  colleagues at Wuhan are the best situated to try to respond
  institutionally to the above challenge. My special greetings to all
  the Chinese FIS friends!
 
 
 
 
  - Mensaje original -
  De: Koichiro Matsuno cxq02...@nifty.com
  Fecha: Sábado, 3 de Noviembre de 2012, 6:11 am
  Asunto: Re: [Fis] The Information Flow
  A: fis@listas.unizar.es
 
  Folks,
 
 Bob U said The foundations, they are trembling! I
  have taken it to imply that propositional
  calculus itself is also in a bad shape. This observation reminds
  me of the hanging paradox first
  invented by an American logician Arthur Prior more than 60 years
  ago. It goes like this:
 
 On a certain Saturday a judge sentenced a man to
  be hanged on Sunday or Monday at noon,
  stipulating at the same time that the man would not know the day
  of his hanging until the morning of
  the day itself. The condemned man argued that if he were hanged
  on Monday, he would be aware of the
  fact by noon on Sunday, and this would contravene the judge's
  stipulation. So the date of his
  hanging would have to be Sunday. Since, however, he had worked
  this out on Saturday, and so knew the
  date of his hanging the day before, the judge's stipulation was
  again contravened. The date,
  therefore, could not be Sunday either. The prisoner concluded
  that he would not be hanged at all.
  However, the official gazette issued on Tuesday reported that
  the man was hanged on last Sunday.
 
 The logician-prisoner (the externalist) was right
  in his deduction upon the trusted propositional
  calculus, while the judge (the internalist) was also right in
  faithfully executing the sentence. But
  both cannot be right at the same time. Despite that, the
  internalist could finally come to preside
  over this empirical world. I had a hard time to convince myself
  of it. Strange?
 
 Cheers,
 Koichiro Matsuno
 
 
 
 
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  fis@listas.unizar.es
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 http://iridia.ulb.ac.be/~marchal/




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Re: [Fis] The Information Flow

2012-11-13 Thread Bob Logan
 the
  problematic claims at the core of mechanical ways of explanation, as
  some (many?) of them refer to the information stuff: unlimited
  communication (even between physical elements), arbitrary partitions
  and boundary conditions, ideal status of the acting laws of nature,
  ominiscient observer, idealized nature of human knowledge  (no
  neurodynamics of knowledge), disciplinary hierarchies versus
  heterarchical interrelationships, logical versus social construction
  and knowledge recombination, idealized social information, etc.etc.
  Probably I have misconceived and wrongly expressed some of those
  problems, but in any case it is unfortunate that there is a dense
  feedback among them and a strong entrenchment with many others, so
  the revision task becomes Herculean even if partially addressed.
 
  The big problem some of us see, and I tried to argument about that
  in the last Beijing FIS meeting, is that without an entrance of some
  partial aspect in the professional science system, none of the
  those challenges has the slightest possibility of being developed in
  the amateur mode/marginal science our studies are caught into.
  Therefore a common challenge for FIS, the new ISIS society, ITHEA,
  Symmetrion, INBIOSA, etc. is to take some piece or problem, with
  practical implications, and enter it into the institutional system,
  it does not matter where and by whom, and little by little expand
  the initial stronghold with the collective support of all of us.
  There is a terrific collection of individualities and scholars in
  the FIS enterprise and the germane entities, so that any small
  oficializing attempt should prosper quite soon.
 
  Let us think about that... there is hope for non-trembling
  foundations! Provided we are institutionally clever.
 
  best wishes
 
  ---Pedro
 
  PS. by the way, I would like to hear in this list from our
  flamboyant Beijing FIS Group, as without discussion they and the
  colleagues at Wuhan are the best situated to try to respond
  institutionally to the above challenge. My special greetings to all
  the Chinese FIS friends!
 
 
 
 
  - Mensaje original -
  De: Koichiro Matsuno cxq02...@nifty.com
  Fecha: Sábado, 3 de Noviembre de 2012, 6:11 am
  Asunto: Re: [Fis] The Information Flow
  A: fis@listas.unizar.es
 
  Folks,
 
 Bob U said The foundations, they are trembling! I
  have taken it to imply that propositional
  calculus itself is also in a bad shape. This observation reminds
  me of the hanging paradox first
  invented by an American logician Arthur Prior more than 60 years
  ago. It goes like this:
 
 On a certain Saturday a judge sentenced a man to
  be hanged on Sunday or Monday at noon,
  stipulating at the same time that the man would not know the day
  of his hanging until the morning of
  the day itself. The condemned man argued that if he were hanged
  on Monday, he would be aware of the
  fact by noon on Sunday, and this would contravene the judge's
  stipulation. So the date of his
  hanging would have to be Sunday. Since, however, he had worked
  this out on Saturday, and so knew the
  date of his hanging the day before, the judge's stipulation was
  again contravened. The date,
  therefore, could not be Sunday either. The prisoner concluded
  that he would not be hanged at all.
  However, the official gazette issued on Tuesday reported that
  the man was hanged on last Sunday.
 
 The logician-prisoner (the externalist) was right
  in his deduction upon the trusted propositional
  calculus, while the judge (the internalist) was also right in
  faithfully executing the sentence. But
  both cannot be right at the same time. Despite that, the
  internalist could finally come to preside
  over this empirical world. I had a hard time to convince myself
  of it. Strange?
 
 Cheers,
 Koichiro Matsuno
 
 
 
 
  ___
  fis mailing list
  fis@listas.unizar.es
  https://webmail.unizar.es/cgi-bin/mailman/listinfo/fis
 
 
 
 
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  fis@listas.unizar.es
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__

Robert K. Logan
Chief Scientist - sLab at OCAD
Prof. Emeritus - Physics - U. of Toronto 
www.physics.utoronto.ca/Members/logan




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Re: [Fis] The Information Flow

2012-11-13 Thread Robin Faichney
Tuesday, November 13, 2012, 3:57:10 PM, Bob wrote:

 ... But for me the interesting phenomena where the logic of
 cause and effect does not hold is the case of emergence and
 self-organization. With an emergent system in which the properties
 of the system can not be derived from, reduced to or predicted from
 the properties of the components the notion of cause and effect does
 not hold. The reductionist program of logical thinking does not do
 much to understand emergent phenomena. It is not that logic is wrong
 it is that it is irrelevant. So if one is an emergentist one cannot
 be a mechanist. That is simple logic. ;-)

Don't know if I'm an emergentist or not. On one hand, I do not believe
in the cannot be derived from, reduced to or predicted from
condition because it seems intrinsically subjective, perhaps even
circular. But on the other hand I do believe that complex systems are
generally just as real and just as significant as their components,
higher level explanations being generally just as good as lower level
ones, and only the purpose for which the explanation is required
determines which level is most appropriate. I also believe that
causation can only be considered to occur horizontally, along levels
of explanation. That is because causation is inherently temporal,
effects following causes, and there is no passage of time in vertical
forays into higher or lower levels of description/explanation. There
is no vertical causation.

However, I do consider myself a mechanist, because as I see it, one
high level event can always be decomposed into a number of lower level
events, and eventually, if the process is repeated, a level will be
reached at which all of the events can be clearly understood as
mechanical. The lower level ones do not CAUSE the highest level one,
because they are occurring simultaneously, but they COMPOSE it, and
there is no mysterious other element to it. Having said which, if the
high level event is to be causally explained, other events on the same
level will have to be involved in the explanation, a low level story
will NOT do the job.

So I believe I've reconciled emergence with mechanism, but I suspect
that whether you agree with me depends on what you consider to be
essential to emergence. Or how strongly you feel about mechanism. Or,
of course, maybe I've just made a silly mistake. :)

(Some say that levels of description/explanation are not real (Don
Ross?), and I don't know whether that's a reasonable thing to say or
not, but they're certainly indispensable to us.)

-- 
Robin Faichney
http://www.robinfaichney.org/

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Re: [Fis] The Information Flow

2012-11-13 Thread Gordana Dodig-Crnkovic
Dear Joseph and FIS colleagues,

I will not argue here for or against computationalism (digital mechanism), 
because I do not understand how complex biological, cognitive and social 
processes can be computable, if no algorithm can be written for them. I speak 
of the processes themselves, not models of them.I would be grateful if someone 
(Bruno?) could explain this to me - I apologize if I have missed where this was 
done.  (Joseph)

It seems to me that the answer to Joseph's question is given in the following 
passage by Roger Penrose:

(S)ome would prefer to define computation in terms of what a physical object 
can (in principle?) achieve (Deutsch, Teuscher, Bauer and Cooper). To me, 
however, this begs the question, and this same question certainly remains, 
whichever may be our preference concerning the use of the term computation. 
If we prefer to use this physical definition, then all physical systems 
compute by definition, and in that case we would simply need a different word 
for the (original Church-Turing) mathematical concept of computation, so that 
the profound question raised, concerning the perhaps computable nature of the 
laws governing the operation of the universe can be studied, and indeed 
questioned.

Penrose in the Foreword to Zenil H. (Ed.): A Computable Universe, Understanding 
Computation  Exploring Nature As Computation, World Scientific Publishing 
Company/Imperial College Press, (2012)

In the field of Natural Computing the whole of nature computes. Nature is a 
network of networks of computing processes.
For many of such processes there are no simple single algorithms (like for 
human mind which also is a process - a network of processes)
There is a complex computational architecture and not a single algorithm.

Nature indeed can be seen as a network of networks of computational processes 
and what we are trying is to compute the way nature does, learning its tricks 
of the trade. So the focus would not be computability but computational 
modeling. How good computational models of nature are we able to produce and 
what does it mean for a physical system to perform computation, computation 
being implementation of physical laws.

From the Introduction to the book Computing Nature, forthcoming in SAPERE book 
series: http://www.mrtc.mdh.se/~gdc/work/COMPUTING-NATURE-20121028.pdf

In a computing nature complex biological, cognitive and social processes are 
(naturally) computable, even if no algorithm can be written for them.
But then computable is a more general term, as Penrose points out.

With best regards,
Gordana



From: fis-boun...@listas.unizar.es [mailto:fis-boun...@listas.unizar.es] On 
Behalf Of Joseph Brenner
Sent: den 13 november 2012 18:24
To: Bob Logan; Stanley N Salthe
Cc: fis
Subject: Re: [Fis] The Information Flow

Dear FIS Friends and Colleagues,

Sometimes I feel as if I have been whistling Dixie, to use an American 
expression for futility, for the last four years. I have tried to call 
attention to the fact that there is at least one way of doing logic, that of 
Stéphane Lupasco as up-dated in my Logic in Reality (LIR), that is not bounded 
by linguistic constraints, but allows one to make inferences about the real 
states of a system, actual and potential.

LIR is thus a logic that is relevant to the discussion, offering a considerably 
more complex picture of causality than a simple reversal of cause and effect. 
Ditto for emergence. It is thus a new but still rigorous, if partly qualitative 
way of mediating certainly philosophical and some scientific efforts, for 
example information-as-process.

I will not argue here for or against computationalism (digital mechanism), 
because I do not understand how complex biological, cognitive and social 
processes can be computable, if no algorithm can be written for them. I speak 
of the processes themselves, not models of them. I would be grateful if someone 
(Bruno?) could explain this to me - I apologize if I have missed where this was 
done.

A contrario, if anyone does not understand Logic in Reality, I would be happy 
to send some references that explain it. This might make possible its inclusion 
in the discussion.

Thank you and best wishes,

Joseph

- Original Message -
From: Bob Loganmailto:lo...@physics.utoronto.ca
To: Stanley N Salthemailto:ssal...@binghamton.edu
Cc: fismailto:fis@listas.unizar.es
Sent: Tuesday, November 13, 2012 4:57 PM
Subject: Re: [Fis] The Information Flow

Hey Stan - I agree with the way you characterize the role of logic as a 
linguistic mechanism. Logic connects one set of statements, the premises, with 
another set of statements, the conclusion. Without challenging your remarks I 
would suggest that like the case with the poets it is sometimes useful to set 
aside the dictates of logic. McLuhan talked about the reversal of cause and 
effect. By this he meant in the case of artists that they start with the effect 
they wish to create and then find the causes

Re: [Fis] The Information Flow

2012-11-12 Thread Xueshan Yan
Dear Pedro,

Dear FIS Colleagues,

 

Thanks Pedro for his assigning FIS Beijing Group to respond
the current FIS topic about Information Flow, to my
knowledge, there are about 20 books published about this
question, but I only contacted a few of them, the following
three have gave me deep impressions:

 

1. Concepts of Molecular Genetics: Information Flow in
Genetics and Evolution (McGraw-Hill, 1977), by Dow Woodward
 Val Woodward.

2. Knowledge and the flow of information (MIT Press, 1981),
by Fred I. Dretske.

3. Communications flows: a census in the United States and
Japan (North-Holland, 1984), by Ithiel de Sola Pool [et
al.].

 

All these researches employed the term of information flow
in Genetics, Philosophy, and Mass Communication
respectively, but they aren’t the true study about
(information) flow. As we know, flow is a metaphorical term
borrowed from Mechanics, so all the Information Flow
explorations should discuss in statistics or mathematics. If
someone only treat the communication of information as an
abstract flow, sorry, this only is a metaphor. These studies
about information flow especially occurred in Management
Science, Computer Science, and Telecommunication very often.

 

So, my opinion is, maybe the topic information flow is very
promising, but we should at least catch on every FLOW in
different professional fields respectively first, don't
worry!

 

Best wishes,

 

Yan Xueshan

Peking University, FIS Beijing Group


  _  

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Sent: Monday, November 12, 2012 1:00 AM
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Subject: fis Digest, Vol 565, Issue 3



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Today's Topics:

   1. Re: The Information Flow (PEDRO CLEMENTE MARIJUAN
FERNANDEZ)



--

Message: 1
Date: Sun, 11 Nov 2012 14:00:03 +0100
From: PEDRO CLEMENTE MARIJUAN FERNANDEZ
pcmarijuan.i...@aragon.es
Subject: Re: [Fis] The Information Flow
To: fis@listas.unizar.es
Message-ID: fbcbe4a4624e.509fa...@aragon.es
Content-Type: text/plain; charset=iso-8859-1

Dear colleagues,

Yes, the foundations are trembling... as usual during quite
long a time. Maybe too many aspects have to be put into line
in order to have new, more consistent foundations for human
knowledge. Until now the different crisis of Mechanics, the
dominant scientific culture, have been solved at the small
price of leaving conceptual inconsistencies until the rug of
brand new fields or subdisciplines while at the same time
fictive claims of unity of sceince, reductionism, etc. were
upheld. Good for mechanics, as probably there were few
competing options around --if any. Bad for the whole human
knowledge, as multidisciplinary schizophrenia has been
assumed as the natural state of mental health.

My opinion is that information science should carefully
examine the problematic claims at the core of mechanical
ways of explanation, as some (many?) of them refer to the
information stuff: unlimited communication (even between
physical elements), arbitrary partitions and boundary
conditions, ideal status of the acting laws of nature,
ominiscient observer, idealized nature of human knowledge
(no neurodynamics of knowledge), disciplinary hierarchies
versus heterarchical interrelationships, logical versus
social construction and knowledge recombination, idealized
social information, etc.etc. Probably I have misconceived
and wrongly expressed some of those problems, but in any
case it is unfortunate that there is a dense feedback among
them and a strong entrenchment with many others, so the
revision task becomes Herculean even if partially addressed.

The big problem some of us see, and I tried to argument
about that in the last Beijing FIS meeting, is that without
an entrance of some partial aspect in the professional
science system, none of the those challenges has the
slightest possibility of being developed in the amateur
mode/marginal science our studies are caught into. Therefore
a common challenge for FIS, the new ISIS society, ITHEA,
Symmetrion, INBIOSA, etc. is to take some piece or problem,
with practical implications, and enter it into the
institutional system, it does not matter where and by whom,
and little by little expand the initial stronghold with the
collective support of all of us. There is a terrific
collection of individualities and scholars in the FIS
enterprise and the germane

Re: [Fis] The Information Flow

2012-11-12 Thread Robert Ulanowicz
Dear Pedro,

Roman  Littlefield is coming out with a volume along those lines  
entitled Beyond Mechanism  
http://www.academia.edu/1141907/Beyond_Mechanism_Putting_Life_Back_Into_Biology

As for our Chinese colleagues, I find them more open to non-mechanical  
scenarios than are anglophones. All three of my books are being  
translated into Chinese. The first one, Growth and Development:  
Ecosystems Phenomenology has already been published.

The best to all,
Bob

Quoting PEDRO CLEMENTE MARIJUAN FERNANDEZ pcmarijuan.i...@aragon.es:

 Dear colleagues,

 Yes, the foundations are trembling... as usual during quite long a  
 time. Maybe too many aspects have to be put into line in order to  
 have new, more consistent foundations for human knowledge. Until now  
 the different crisis of Mechanics, the dominant scientific culture,  
 have been solved at the small price of leaving conceptual  
 inconsistencies until the rug of brand new fields or subdisciplines  
 while at the same time fictive claims of unity of sceince,  
 reductionism, etc. were upheld. Good for mechanics, as probably  
 there were few competing options around --if any. Bad for the whole  
 human knowledge, as multidisciplinary schizophrenia has been  
 assumed as the natural state of mental health.

 My opinion is that information science should carefully examine the  
 problematic claims at the core of mechanical ways of explanation, as  
 some (many?) of them refer to the information stuff: unlimited  
 communication (even between physical elements), arbitrary partitions  
 and boundary conditions, ideal status of the acting laws of nature,  
 ominiscient observer, idealized nature of human knowledge  (no  
 neurodynamics of knowledge), disciplinary hierarchies versus  
 heterarchical interrelationships, logical versus social construction  
 and knowledge recombination, idealized social information, etc.etc.  
 Probably I have misconceived and wrongly expressed some of those  
 problems, but in any case it is unfortunate that there is a dense  
 feedback among them and a strong entrenchment with many others, so  
 the revision task becomes Herculean even if partially addressed.

 The big problem some of us see, and I tried to argument about that  
 in the last Beijing FIS meeting, is that without an entrance of some  
 partial aspect in the professional science system, none of the  
 those challenges has the slightest possibility of being developed in  
 the amateur mode/marginal science our studies are caught into.  
 Therefore a common challenge for FIS, the new ISIS society, ITHEA,  
 Symmetrion, INBIOSA, etc. is to take some piece or problem, with  
 practical implications, and enter it into the institutional system,  
 it does not matter where and by whom, and little by little expand  
 the initial stronghold with the collective support of all of us.  
 There is a terrific collection of individualities and scholars in  
 the FIS enterprise and the germane entities, so that any small  
 oficializing attempt should prosper quite soon.

 Let us think about that... there is hope for non-trembling  
 foundations! Provided we are institutionally clever.

 best wishes

 ---Pedro

 PS. by the way, I would like to hear in this list from our  
 flamboyant Beijing FIS Group, as without discussion they and the  
 colleagues at Wuhan are the best situated to try to respond  
 institutionally to the above challenge. My special greetings to all  
 the Chinese FIS friends!




 - Mensaje original -
 De: Koichiro Matsuno cxq02...@nifty.com
 Fecha: Sábado, 3 de Noviembre de 2012, 6:11 am
 Asunto: Re: [Fis] The Information Flow
 A: fis@listas.unizar.es

 Folks,

    Bob U said The foundations, they are trembling! I
 have taken it to imply that propositional
 calculus itself is also in a bad shape. This observation reminds
 me of the hanging paradox first
 invented by an American logician Arthur Prior more than 60 years
 ago. It goes like this:

    On a certain Saturday a judge sentenced a man to
 be hanged on Sunday or Monday at noon,
 stipulating at the same time that the man would not know the day
 of his hanging until the morning of
 the day itself. The condemned man argued that if he were hanged
 on Monday, he would be aware of the
 fact by noon on Sunday, and this would contravene the judge's
 stipulation. So the date of his
 hanging would have to be Sunday. Since, however, he had worked
 this out on Saturday, and so knew the
 date of his hanging the day before, the judge's stipulation was
 again contravened. The date,
 therefore, could not be Sunday either. The prisoner concluded
 that he would not be hanged at all.
 However, the official gazette issued on Tuesday reported that
 the man was hanged on last Sunday.

    The logician-prisoner (the externalist) was right
 in his deduction upon the trusted propositional
 calculus, while the judge (the internalist) was also right in
 faithfully executing the sentence. But
 both cannot

Re: [Fis] The Information Flow

2012-11-11 Thread PEDRO CLEMENTE MARIJUAN FERNANDEZ
Dear colleagues,

Yes, the foundations are trembling... as usual during quite long a time. Maybe 
too many aspects have to be put into line in order to have new, more consistent 
foundations for human knowledge. Until now the different crisis of Mechanics, 
the dominant scientific culture, have been solved at the small price of 
leaving conceptual inconsistencies until the rug of brand new fields or 
subdisciplines while at the same time fictive claims of unity of sceince, 
reductionism, etc. were upheld. Good for mechanics, as probably there were few 
competing options around --if any. Bad for the whole human knowledge, as 
multidisciplinary schizophrenia has been assumed as the natural state of 
mental health.

My opinion is that information science should carefully examine the problematic 
claims at the core of mechanical ways of explanation, as some (many?) of them 
refer to the information stuff: unlimited communication (even between physical 
elements), arbitrary partitions and boundary conditions, ideal status of the 
acting laws of nature, ominiscient observer, idealized nature of human 
knowledge  (no neurodynamics of knowledge), disciplinary hierarchies versus 
heterarchical interrelationships, logical versus social construction and 
knowledge recombination, idealized social information, etc.etc. Probably I have 
misconceived and wrongly expressed some of those problems, but in any case it 
is unfortunate that there is a dense feedback among them and a strong 
entrenchment with many others, so the revision task becomes Herculean even if 
partially addressed.

The big problem some of us see, and I tried to argument about that in the last 
Beijing FIS meeting, is that without an entrance of some partial aspect in the 
professional science system, none of the those challenges has the slightest 
possibility of being developed in the amateur mode/marginal science our studies 
are caught into. Therefore a common challenge for FIS, the new ISIS society, 
ITHEA, Symmetrion, INBIOSA, etc. is to take some piece or problem, with 
practical implications, and enter it into the institutional system, it does not 
matter where and by whom, and little by little expand the initial stronghold 
with the collective support of all of us. There is a terrific collection of 
individualities and scholars in the FIS enterprise and the germane entities, so 
that any small oficializing attempt should prosper quite soon.

Let us think about that... there is hope for non-trembling foundations! 
Provided we are institutionally clever.

best wishes

---Pedro

PS. by the way, I would like to hear in this list from our flamboyant Beijing 
FIS Group, as without discussion they and the colleagues at Wuhan are the best 
situated to try to respond institutionally to the above challenge. My special 
greetings to all the Chinese FIS friends!




- Mensaje original -
De: Koichiro Matsuno cxq02...@nifty.com
Fecha: Sábado, 3 de Noviembre de 2012, 6:11 am
Asunto: Re: [Fis] The Information Flow
A: fis@listas.unizar.es

 Folks,
 
    Bob U said The foundations, they are trembling! I 
 have taken it to imply that propositional
 calculus itself is also in a bad shape. This observation reminds 
 me of the hanging paradox first
 invented by an American logician Arthur Prior more than 60 years 
 ago. It goes like this:
 
    On a certain Saturday a judge sentenced a man to 
 be hanged on Sunday or Monday at noon,
 stipulating at the same time that the man would not know the day 
 of his hanging until the morning of
 the day itself. The condemned man argued that if he were hanged 
 on Monday, he would be aware of the
 fact by noon on Sunday, and this would contravene the judge's 
 stipulation. So the date of his
 hanging would have to be Sunday. Since, however, he had worked 
 this out on Saturday, and so knew the
 date of his hanging the day before, the judge's stipulation was 
 again contravened. The date,
 therefore, could not be Sunday either. The prisoner concluded 
 that he would not be hanged at all.
 However, the official gazette issued on Tuesday reported that 
 the man was hanged on last Sunday. 
 
    The logician-prisoner (the externalist) was right 
 in his deduction upon the trusted propositional
 calculus, while the judge (the internalist) was also right in 
 faithfully executing the sentence. But
 both cannot be right at the same time. Despite that, the 
 internalist could finally come to preside
 over this empirical world. I had a hard time to convince myself 
 of it. Strange?
 
    Cheers,
    Koichiro Matsuno
 
 
 
 
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Re: [Fis] The Information Flow - Transcending the Turing Limit

2012-11-11 Thread Bill Seaman
From Bruno:

 But the word mechanism cannot have the same sense before and  
 after the discovery of the universal machine and its limitation. As my  
 work illustrates in detail, universal machine have already two  
 internal aspects which conflict with each other, and are close to the  
 analytical/intuitive distinction.

This suggests the need to transcend the Universal machine as articulated by 
Turing. 
It suggests the need for us to articulate a ultracomplex mechanism that is of a 
different variety.

Otto Rossler in conversation with Seaman suggests the employment of transfinite 
numbers ---
Cantor and transfinite accuracy

This paper may be of interest:

The motives behind Cantor's Set Theory - Physical, biological, and 
philosophical questions.
http://personal.us.es/josef/Cantor.pdf

Analogue mechanisms (or their highly parsed emulation in binary machines) might 
be one approach. 
See also:

Neural Networks and Analog Computation: Beyond the Turing Limit
Author: Hava T. Siegelmann
The theoretical foundations of Neural Networks and Analog Computation 
conceptualize neural networks as a particular type of computer consisting of 
multiple assemblies of basic processors interconnected in an intricate 
structure.

Examining these networks under various resource constraints reveals a continuum 
of computational devices, several of which coincide with well-known classical 
models. What emerges is a Church-Turing-like thesis, applied to the field of 
analog computation, which features the neural network model in place of the 
digital Turing machine. This new concept can serve as a point of departure for 
the development of alternative, supra-Turing computational theories. On a 
mathematical level, the treatment of neural computations enriches the theory of 
computation but also explicates the computational complexity associated with 
biological networks, adaptive engineering tools, and related models from the 
fields of control theory and nonlinear dynamics.[i]

Segelmann states: “The surprising finding has been that when analog networks 
assume real weights, their power encompasses and transcends that of digital 
computers.”[ii] She goes on to say “our model captures nature's manifest 
“computation” of the future physical world from the present, in which constants 
that are not known to us, or cannot even be measured, do affect the evolution 
of the system.”[iii]

[i] Siegelmann, H. (2007), Neural Networks and Analog Computation: Beyond the 
Turing Limit, http://www.cs.umass.edu/~hava/advertisement.html, Accessed 1 
December 2009. See also Siegelmann, H (1999), Neural Networks and Analogue 
Computation, Beyond the Turing Limit, Boston, MA: Birkhäuser.

[ii] Ibid.

[iii] Ibid.



Best

Bill Seaman___
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Re: [Fis] The Information Flow

2012-11-02 Thread Pedro C. Marijuan
FIS friends,

It is too big a challenge to respond to Joseph's and Bill's points. 
While thinking about their points (in slow thought mode) I will just 
make a couple of complementary remarks.

First, following Gould's arguments on replaying life's tape, what 
would happen if we could replay the sciences' tape? Would we obtain a 
similar map of the sciences? Would we finally obtain the same ways of 
thinking  visions of the world? I do not think so. Historically, we 
could have had a very different system of the sciences... when the East 
and the West discovered each other before the scientific revolution 
(medieval travels of Marco Polo and Ruiz de Clavijo) and later on during 
the Enlightenment, there was a curious situation of alternative paths 
followed by each World. Joseph Needham's work summarizes the respective 
stronger and weaker points. The point is that scientific trajectories 
have to be re-examined along the different epochs, motivated either by 
external happenstances or just by the inner dynamics. And this is a 
problem of our time concerning the massive social experiment with 
accelerated information flows. We lack scientific guidance on important 
parts of the process ---not just the technological wizard.

The other point is about vindicating the convenience of mechanical 
thinking ---just for large domains of experience but not for tackling 
the general nature  problems of information flows. It is in this sense 
that I was talking about the need of a sort of Heraclitean paradigm 
(well taken by Joseph)... About the completeness of the mechanical way 
of thinking, based on particles, forces (and fields), I remember I asked 
in this list about the laws of nature several years ago---where do 
they reside so that they can directly interact with matter? What 
materiality have themselves? Are they but disembodied information? I 
think the responses dovetail better with informational thinking, which 
is in fact what today prevails in cosmology and quantum information 
processing.

Am afraid I have advanced little and just introduced more noise in the 
discussion!

best wishes

---Pedro


 Challenge for FIS- What are your 10 most important questions?


 1) How can we best explore the latest version of new means of 
 scanning/observing the body? What are they? how are they 
 mathematically intra-explored?
 2) how can we best move from emergent systems to known systems? 
 Transcending Rosen...
 3) is there a new relational mathematics that moves across current 
 spaces? Who is working now on this? How can we do it?
 4) How can people best collaborate with different mind sets --- people 
 that think differently?? Is this valuable?
 5) How can we make new publishing arenas that explore and support 
 transdisciplinary research?
 6) How can we best bridge research fields in terms of mathematics?
 7) How can we go beyond what we know in a quantum jump without having 
 our past research being put into question? or should we just allow 
 ourselves to change as we learn/absorb?
 8) How can we make sure institutions are supporting such research in 
 terms of tenure?
 9) What is the best publishing venue for such research?
 10) Who is best funding this…


 b


 Bill Seaman
 Professor, Department of Art, Art History  Visual Studies
 DUKE UNIVERSITY
 114 b East Duke Building
 Box 90764
 Durham, NC 27708, USA
 +1-919-684-2499
 http://billseaman.com/
 http://fds.duke.edu/db/aas/AAH/faculty/william.seaman
 http://www.dibs.duke.edu/research/profiles/98-william-seaman



 RadioSeaman
 Paste into itunes (Advanced/open audio streams) for internet radio:
 http://smw-aux.trinity.duke.edu:8000/radioseaman





 On Oct 27, 2012, at 11:34 AM, Bruno Marchal marc...@ulb.ac.be 
 mailto:marc...@ulb.ac.be wrote:

 Even if the Parmenidean reality is restricted to the natural numbers,
 with only the laws of addition and multiplication, we can prove,
 assuming our brain are Turing emulable, that the view from inside as
 to be Heraclitean.

 The problem is not mechanism. The problem is the reductionist
 conception of mechanism. I think.

 The incompleteness phenomenon does not refute mechanism, like some
 have proposed, but it does refute the reductionist conception of
 mechanism.

 Arithmetic is full of life and dreams.

 Best,

 Bruno


-- 
-
Pedro C. Marijuán
Grupo de Bioinformación / Bioinformation Group
Instituto Aragonés de Ciencias de la Salud
Centro de Investigación Biomédica de Aragón (CIBA)
Avda. San Juan Bosco, 13, planta X
50009 Zaragoza, Spain
Tfno. +34 976 71 3526 ( 6818)
pcmarijuan.i...@aragon.es
http://sites.google.com/site/pedrocmarijuan/
-

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Re: [Fis] The Information Flow

2012-11-02 Thread Robert Ulanowicz
Quoting Pedro C. Marijuan pcmarijuan.i...@aragon.es:

 First, following Gould's arguments on replaying life's tape, what
 would happen if we could replay the sciences' tape? Would we obtain a
 similar map of the sciences? Would we finally obtain the same ways of
 thinking  visions of the world? I do not think so. Historically, we
 could have had a very different system of the sciences... when the East
 and the West discovered each other before the scientific revolution
 (medieval travels of Marco Polo and Ruiz de Clavijo) and later on during
 the Enlightenment, there was a curious situation of alternative paths
 followed by each World. Joseph Needham's work summarizes the respective
 stronger and weaker points. The point is that scientific trajectories
 have to be re-examined along the different epochs, motivated either by
 external happenstances or just by the inner dynamics. And this is a
 problem of our time concerning the massive social experiment with
 accelerated information flows. We lack scientific guidance on important
 parts of the process ---not just the technological wizard.

Dear Pedro,

I heartily concur! Folks have been concerned with the contingent  
nature of science for a while now. One of the most prominent was John  
A. Wheeler, who dreamed up a metaphor for the development of science  
that I have included in several of my publications:

  **

The development of science is like a game played by a number of guests  
at a dinner party. Waiting for dinner to be served, the guests elect  
to play the game “20 Questions” the object of which is to guess a  
word. In Wheeler’s version, one individual is sent out of the room,  
while those who remain are to decide upon a particular word. It is  
explained to the delegated person that upon returning, he/she will  
question each of the group in turn and the responses must take the  
form of a simple, unadorned “yes” or “no” until the questioner guesses  
the word. After the designated player leaves the room, one of the  
guests suggests that the group not choose a word. Rather, when the  
subject returns and poses the first question, the initial respondent  
is completely free to answer “yes” or “no” on unfettered whimsy.  
Similarly, the second person is at liberty to make either reply. The  
only condition upon the second person is that his/her response may not  
contradict the first reply. The restriction upon the third respondent  
is that that individual’s reply must not be dissonant with either of  
the first two answers, and so forth. The game ends when the subject  
asks, “Is the word X?” and the only response coherent with all  
previous replies is “Yes”.

After Wheeler, John A. 1980. Beyond the black hole. Pp. 341-375 In: H.  
Woolf (Ed.) Some Strangeness in the Proportion. Reading, PA:  
Addison-Wesley.

   **

Now for a recent and more radical turn in this direction, I direct  
your attention to the work of historian of science, Ed Dellian  
http://www.neutonus-reformatus.com/frameset.html. Ed recently  
translated Principia from the Latin into German and discovered that  
most of  the contemporary renditions of Newton's second law don't  
correspond to Newton's narrative. In particular, we generally quote  
his second law as f=ma. Newton, however, left off with a geometric and  
discrete version of the second law of the form (f/mv)=c, a constant.  
The continuous, algebraic versions of mechanical laws trace rather to  
Liebnitz and Euler as what Dellian calls Berliner Mechanik. Newton  
argued strenuously against this direction! Dellian further contends  
that by remaining with Newton's geometric stance one could have  
avoided the necessity of creating the separate disciplines of  
thermodynamics and quantum physics, so that physics would have  
remained a more unified whole.

Ed's assertions caught my attention, because I have always been  
suspicious about the first law of thermodynamics (See p23ff in  
http://people.biology.ufl.edu/ulan/pubs/EcolAsc.htm.) I have since  
come to the conclusion that when the continuum assumption is valid,  
the classical algebraic laws perform brilliantly. When they do not,  
they become useless, if not misleading. In particular, Elsasser warned  
us of their inapplicability in the face of heterogeneity  
http://www.vordenker.de/elsasser/we_logic-biol.pdf.

I have come to the conclusion that much of contemporary physics is  
dealing with la-la land and not reality. Take quantum entanglement,  
for example. Physicists would have us believe that an electron can be  
present in our lab or halfway across the universe, and will be  
resolved instantaneously upon measurement. Well, I can swallow  
entanglement within a space of say, 1,000 radii of an electron. But at  
macroscopic dimensions? Anyone who believes that fairy tale has never  
encountered the Buckingham-Pi Theorem (as most physicists 

Re: [Fis] The Information Flow

2012-11-02 Thread Bruno Marchal

On 02 Nov 2012, at 14:16, Pedro C. Marijuan wrote:

 FIS friends,

 It is too big a challenge to respond to Joseph's and Bill's points.
 While thinking about their points (in slow thought mode) I will just
 make a couple of complementary remarks.

 First, following Gould's arguments on replaying life's tape, what
 would happen if we could replay the sciences' tape? Would we obtain a
 similar map of the sciences? Would we finally obtain the same ways of
 thinking  visions of the world? I do not think so. Historically, we
 could have had a very different system of the sciences... when the  
 East
 and the West discovered each other before the scientific revolution
 (medieval travels of Marco Polo and Ruiz de Clavijo) and later on  
 during
 the Enlightenment, there was a curious situation of alternative paths
 followed by each World. Joseph Needham's work summarizes the  
 respective
 stronger and weaker points. The point is that scientific trajectories
 have to be re-examined along the different epochs, motivated either by
 external happenstances or just by the inner dynamics. And this is a
 problem of our time concerning the massive social experiment with
 accelerated information flows. We lack scientific guidance on  
 important
 parts of the process ---not just the technological wizard.

I think the futures are plural, but what you say might make sense for  
a notion of normal (in Guass sense) futures, but then it can depend at  
which scale level you will replay the tape.




 The other point is about vindicating the convenience of mechanical
 thinking ---just for large domains of experience but not for tackling
 the general nature  problems of information flows. It is in this  
 sense
 that I was talking about the need of a sort of Heraclitean paradigm
 (well taken by Joseph)... About the completeness of the mechanical way
 of thinking, based on particles, forces (and fields), I remember I  
 asked
 in this list about the laws of nature several years ago---where do
 they reside so that they can directly interact with matter? What
 materiality have themselves? Are they but disembodied information? I
 think the responses dovetail better with informational thinking, which
 is in fact what today prevails in cosmology and quantum information
 processing.

I sort of agree. I certainly agree with the spirit of what you say  
here. But the word mechanism cannot have the same sense before and  
after the discovery of the universal machine and its limitation. As my  
work illustrates in detail, universal machine have already two  
internal aspects which conflict with each other, and are close to the  
analytical/intuitive distinction.
In a sense, no machine can believe analytically that she is a machine,  
and from her inner , first person perspective this happens to be true:  
the 1p of a machine is not possibly a machine from the machine 1p  
view. That is why I insist that mechanism, after Gödel and Turing  
appears to be a vaccine against reductionist thinking.

Now there is a (big) price for this, which is that materialism get  
inconsistent (even the weak materialism which asserts only the  
existence of primitive matter). Eventually the appearance of matter  
has to be entirely justified by the coherence of the relative number  
dreams (dream = computations as seen by the computed person).
So mechanism disallows a view of nature based on particles and forces.  
They have to be fictional mind construct to make locally sense of the  
experience lived in the artithmetical reality.
Matter is not disembodied information, but first person plural  
(shared) subjective appearances in the coherent dreams of the numbers,  
or more exactly numbers relation with each other. Computationalism is  
used by materialist to put consciousness under the rug, but the fact  
is that materialism is simply incompatible with computationalism.  
There is no choice than to go back to Plato, or to abandon mechanism  
if we want to maintain Aristotle theology (like most materialist do,  
consciously or not).





 Am afraid I have advanced little and just introduced more noise in the
 discussion!

Not at all. I personally find those points very important. It  
certainly gives me the opportunity to insist on something I have  
worked on for a very long time, and which is that mechanism itself  
forbids the mechanical reductionism.
Sometimes I sum this by if my 3p I is a machine, then my 1p I is not a  
machine, from my 1p point of view.
It makes mechanism into a relief for those who dislike reductionist  
thinking, especially around the communication and information studies.
But then it makes us more ignorant than what many physicalists want us  
to believe. Indeed, now, the laws of physics got a non trivial origin,  
and they have evolved themselves in a space of numbers/machine dreams.  
This is far from the current aristotelian metaphysics assumed, not  
always consciously, by many scientists and philosophers alike.

Best,

Bruno

Re: [Fis] The Information Flow

2012-11-02 Thread Koichiro Matsuno
Folks,

   Bob U said The foundations, they are trembling! I have taken it to imply 
that propositional
calculus itself is also in a bad shape. This observation reminds me of the 
hanging paradox first
invented by an American logician Arthur Prior more than 60 years ago. It goes 
like this:

   On a certain Saturday a judge sentenced a man to be hanged on Sunday or 
Monday at noon,
stipulating at the same time that the man would not know the day of his hanging 
until the morning of
the day itself. The condemned man argued that if he were hanged on Monday, he 
would be aware of the
fact by noon on Sunday, and this would contravene the judge's stipulation. So 
the date of his
hanging would have to be Sunday. Since, however, he had worked this out on 
Saturday, and so knew the
date of his hanging the day before, the judge's stipulation was again 
contravened. The date,
therefore, could not be Sunday either. The prisoner concluded that he would not 
be hanged at all.
However, the official gazette issued on Tuesday reported that the man was 
hanged on last Sunday. 

   The logician-prisoner (the externalist) was right in his deduction upon the 
trusted propositional
calculus, while the judge (the internalist) was also right in faithfully 
executing the sentence. But
both cannot be right at the same time. Despite that, the internalist could 
finally come to preside
over this empirical world. I had a hard time to convince myself of it. Strange?

   Cheers,
   Koichiro Matsuno




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Re: [Fis] The Information Flow

2012-10-27 Thread Bruno Marchal

On 26 Oct 2012, at 22:32, PEDRO CLEMENTE MARIJUAN FERNANDEZ wrote:

 Dear FISers,

 Is it interesting the discussion on wether those informational  
 entities contain realizations of the Aristotelian scheme of  
 causality or not?

 The cell, in my view, conspicuously fails --it would be too  
 artifactual an scheme. Some parts of the sensory paths of advanced  
 nervous systems seem to separate some of those causes --but only in  
 a few parts or patches of the concerned pathway. For instance, in  
 visual processing the what and the how/where seem to be  
 travelling together undifferentiated along the optic nerve and are  
 separated --more or less-- after the visual superior colliculus in  
 the midbrain before discharging onto the visual cortex. The really  
 big flow of spikes arriving each instant (many millions every few  
 milisec) are mixed and correlated with themselves and with other top- 
 down and bottom-up preexisting flows in multiple neural mappings...  
 and further, when those flows mix with the association areas under  
 the influence of languaje, then, and only then, all those logic and  
 conceptual categorizations of human thought are enacted in the  
 ephemeral synaptic networks.

 I am optimistic that  a new Heraclitean way of thinking boils down  
 in network science, neuroinformatics, systems biology,  
 bioinformation etc. Neither the Parmenidean eliminative fixism of  
 classical reductionists, nor the Aristotelian organicism of  
 systemicists. Say that this is a caricature. However you cannot  
 bathe twice in the same river not just because we all are caught  
 into the universal physical flow of photons and forces, but for the  
 Heraclitean flux of our own neurons and brains, for the inner  
 torrents of the aggregated information flows. The same for whatever  
 cells, societies, etc. and their physical structures for info  
 transportation.

 Either we produce an interesting new vision of the world, finally  
 making sense of those perennial metaphors among the different  
 (informational) realms, or information science will continue to be  
 that small portion of incoherent patches more or less close to  
 information theory or to artificial intelligence. In spite of  
 decades of bla-bla- about information revolution and information  
 society and tons of ad hoc literature, the educated thought of our  
 contemporary society continues to be deeply mechanistic!

 Why?


Even if the Parmenidean reality is restricted to the natural numbers,  
with only the laws of addition and multiplication, we can prove,  
assuming our brain are Turing emulable, that the view from inside as  
to be Heraclitean.

The problem is not mechanism. The problem is the reductionist  
conception of mechanism. I think.

The incompleteness phenomenon does not refute mechanism, like some  
have proposed, but it does refute the reductionist conception of  
mechanism.

Arithmetic is full of life and dreams.

Best,

Bruno







 ---Pedro


 
  -snip-
 
  I think it of some interest that I have
  previously ( 2006  On
  Aristotle’s conception of causality.
  General Systems Bulletin 35:
  11.) proposed that the Aristotelian 'formal
  cause' determines both
  'what happens' and 'how it happens', and that
  the combination of
  this with material cause ('what it happens
  to') delivers 'where' it
  happens.
 
  (For completeness sake I add that efficient
  cause determines only
  'when it happens', while final cause points
  to 'why it happens'.  It
  would be quite exciting to find that these
  informations were also
  carried on separate tracts.)
 
 
  It would be exciting, as that would seem to refute the
  Aristotelean idea
  of the four causes as four aspects of all causation. However an
  information channel can carry some part of the information from
  its
  source, which would be a sort of filter or abstraction of the
  source.
  So, for example, a channel might be sensitive only to the how,
  but not
  the what, and vice versa. A channel is fundamentally a mapping
  of
  classes from a source to a sink that through instances that
  retain the
  mapping (see Barwsie and Seligman, Information Flow: The Logic
  of
  Distributed Systems). So in this case, a channel sensitive to,
  say,
  what, would retain the what classifications of the source in a
  way
  that the sink could use, but perhaps not any other information.
  The
  channels themselves could still maintain all four aspects of
  Aristotelean causation, so Aristotle need not be refuted. This
  would
  still be very interesting, though. I am unclear what functional
  advantage there would be, though we certainly manage to separate
  these
  causes in much of our thinking (perhaps even, we can't help it).
 
  Cheers,
  John
 
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  http://www.ukzn.ac.za/disclaimer ===
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Re: [Fis] The Information Flow

2012-10-27 Thread Stanley N Salthe
Pedro -- The Aristotelian causal categories are conceptual tools, providing
language for distinguishing aspects of a scene.  Without them we are liable
to miss certain aspects of nature. For example, Francis Bacon eliminated
final cause from science discourse, explicitly stating that finality can
only apply to human needs. This eliminated much in nature -- in fact those
aspects not useful for the construction of machines.  Note that
experimental science -- most of physics -- embodies formal and final causes
in the construction of an experimental setup, eliminating these categories
from the observation of what happens when an observed system is stimulated
by an efficient cause (to be noted only afterward in 'materials and
methods').  Thus, formal and final causes tend to become invisible.  This
is valid in physics, or any experimental science which seeks to discover
the possibilities of observed systems, and not to explain actual phenomena
(which are mostly influenced by historically determined nonholonomic
constraints and context (formal causes).

The fact that 'what, how and where' may be transported along one route in a
natural system cannot eliminate them as conceptual tools.

STAN


On Fri, Oct 26, 2012 at 4:32 PM, PEDRO CLEMENTE MARIJUAN FERNANDEZ 
pcmarijuan.i...@aragon.es wrote:

 Dear FISers,

 Is it interesting the discussion on wether those informational entities
 contain realizations of the Aristotelian scheme of causality or not?

 The cell, in my view, conspicuously fails --it would be too artifactual an
 scheme. Some parts of the sensory paths of advanced nervous systems seem to
 separate some of those causes --but only in a few parts or patches of the
 concerned pathway. For instance, in visual processing the what and the
 how/where seem to be travelling together undifferentiated along the optic
 nerve and are separated --more or less-- after the visual superior
 colliculus in the midbrain before discharging onto the visual cortex. The
 really big flow of spikes arriving each instant (many millions every few
 milisec) are mixed and correlated with themselves and with other top-down
 and bottom-up preexisting flows in multiple neural mappings... and further,
 when those flows mix with the association areas under the influence of
 languaje, then, and only then, all those logic and conceptual
 categorizations of human thought are enacted in the ephemeral synaptic
 networks.

 I am optimistic that  a new Heraclitean way of thinking boils down in
 network science, neuroinformatics, systems biology, bioinformation etc.
 Neither the Parmenidean eliminative fixism of classical reductionists,
 nor the Aristotelian organicism of systemicists. Say that this is a
 caricature. However you cannot bathe twice in the same river not just
 because we all are caught into the universal physical flow of photons and
 forces, but for the Heraclitean flux of our own neurons and brains, for
 the inner torrents of the aggregated information flows. The same for
 whatever cells, societies, etc. and their physical structures for info
 transportation.

 Either we produce an interesting new vision of the world, finally making
 sense of those perennial metaphors among the different (informational)
 realms, or information science will continue to be that small portion of
 incoherent patches more or less close to information theory or to
 artificial intelligence. In spite of decades of bla-bla- about information
 revolution and information society and tons of ad hoc literature, the
 educated thought of our contemporary society continues to be deeply
 mechanistic!

 Why?

 best wishes

 ---Pedro


 
  -snip-
 
  I think it of some interest that I have
  previously ( 2006  On
  Aristotle’s conception of causality.
  General Systems Bulletin 35:
  11.) proposed that the Aristotelian 'formal
  cause' determines both
  'what happens' and 'how it happens', and that
  the combination of
  this with material cause ('what it happens
  to') delivers 'where' it
  happens.
 
  (For completeness sake I add that efficient
  cause determines only
  'when it happens', while final cause points
  to 'why it happens'.  It
  would be quite exciting to find that these
  informations were also
  carried on separate tracts.)
 
 
  It would be exciting, as that would seem to refute the
  Aristotelean idea
  of the four causes as four aspects of all causation. However an
  information channel can carry some part of the information from
  its
  source, which would be a sort of filter or abstraction of the
  source.
  So, for example, a channel might be sensitive only to the how,
  but not
  the what, and vice versa. A channel is fundamentally a mapping
  of
  classes from a source to a sink that through instances that
  retain the
  mapping (see Barwsie and Seligman, Information Flow: The Logic
  of
  Distributed Systems). So in this case, a channel sensitive to,
  say,
  what, would retain the what 

Re: [Fis] The Information Flow

2012-10-27 Thread Bill Seaman
I really respect all involved … that said-
Can we leave the past for a moment and just try to ask the 10 most important 
questions of today.
What are they!
Jesus - this feel like a historical pissing match and is not being really 
constructive.
b



On Oct 27, 2012, at 11:34 AM, Bruno Marchal marc...@ulb.ac.be wrote:

 
 On 26 Oct 2012, at 22:32, PEDRO CLEMENTE MARIJUAN FERNANDEZ wrote:
 
 Dear FISers,
 
 Is it interesting the discussion on wether those informational  
 entities contain realizations of the Aristotelian scheme of  
 causality or not?
 
 The cell, in my view, conspicuously fails --it would be too  
 artifactual an scheme. Some parts of the sensory paths of advanced  
 nervous systems seem to separate some of those causes --but only in  
 a few parts or patches of the concerned pathway. For instance, in  
 visual processing the what and the how/where seem to be  
 travelling together undifferentiated along the optic nerve and are  
 separated --more or less-- after the visual superior colliculus in  
 the midbrain before discharging onto the visual cortex. The really  
 big flow of spikes arriving each instant (many millions every few  
 milisec) are mixed and correlated with themselves and with other top- 
 down and bottom-up preexisting flows in multiple neural mappings...  
 and further, when those flows mix with the association areas under  
 the influence of languaje, then, and only then, all those logic and  
 conceptual categorizations of human thought are enacted in the  
 ephemeral synaptic networks.
 
 I am optimistic that  a new Heraclitean way of thinking boils down  
 in network science, neuroinformatics, systems biology,  
 bioinformation etc. Neither the Parmenidean eliminative fixism of  
 classical reductionists, nor the Aristotelian organicism of  
 systemicists. Say that this is a caricature. However you cannot  
 bathe twice in the same river not just because we all are caught  
 into the universal physical flow of photons and forces, but for the  
 Heraclitean flux of our own neurons and brains, for the inner  
 torrents of the aggregated information flows. The same for whatever  
 cells, societies, etc. and their physical structures for info  
 transportation.
 
 Either we produce an interesting new vision of the world, finally  
 making sense of those perennial metaphors among the different  
 (informational) realms, or information science will continue to be  
 that small portion of incoherent patches more or less close to  
 information theory or to artificial intelligence. In spite of  
 decades of bla-bla- about information revolution and information  
 society and tons of ad hoc literature, the educated thought of our  
 contemporary society continues to be deeply mechanistic!
 
 Why?
 
 
 Even if the Parmenidean reality is restricted to the natural numbers,  
 with only the laws of addition and multiplication, we can prove,  
 assuming our brain are Turing emulable, that the view from inside as  
 to be Heraclitean.
 
 The problem is not mechanism. The problem is the reductionist  
 conception of mechanism. I think.
 
 The incompleteness phenomenon does not refute mechanism, like some  
 have proposed, but it does refute the reductionist conception of  
 mechanism.
 
 Arithmetic is full of life and dreams.
 
 Best,
 
 Bruno
 
 
 
 
 
 
 
 ---Pedro
 
 
 
-snip-
 
I think it of some interest that I have
 previously ( 2006  On
Aristotle’s conception of causality.
 General Systems Bulletin 35:
11.) proposed that the Aristotelian 'formal
 cause' determines both
'what happens' and 'how it happens', and that
 the combination of
this with material cause ('what it happens
 to') delivers 'where' it
happens.
 
(For completeness sake I add that efficient
 cause determines only
'when it happens', while final cause points
 to 'why it happens'.  It
would be quite exciting to find that these
 informations were also
carried on separate tracts.)
 
 
 It would be exciting, as that would seem to refute the
 Aristotelean idea
 of the four causes as four aspects of all causation. However an
 information channel can carry some part of the information from
 its
 source, which would be a sort of filter or abstraction of the
 source.
 So, for example, a channel might be sensitive only to the how,
 but not
 the what, and vice versa. A channel is fundamentally a mapping
 of
 classes from a source to a sink that through instances that
 retain the
 mapping (see Barwsie and Seligman, Information Flow: The Logic
 of
 Distributed Systems). So in this case, a channel sensitive to,
 say,
 what, would retain the what classifications of the source in a
 way
 that the sink could use, but perhaps not any other information.
 The
 channels themselves could still maintain all four aspects of
 Aristotelean causation, so Aristotle need not be refuted. This
 would
 still be very interesting, though. I am unclear what functional
 advantage there would be, though we 

Re: [Fis] The Information Flow

2012-10-26 Thread PEDRO CLEMENTE MARIJUAN FERNANDEZ
Dear FISers,

Is it interesting the discussion on wether those informational entities contain 
realizations of the Aristotelian scheme of causality or not? 

The cell, in my view, conspicuously fails --it would be too artifactual an 
scheme. Some parts of the sensory paths of advanced nervous systems seem to 
separate some of those causes --but only in a few parts or patches of the 
concerned pathway. For instance, in visual processing the what and the 
how/where seem to be travelling together undifferentiated along the optic 
nerve and are separated --more or less-- after the visual superior colliculus 
in the midbrain before discharging onto the visual cortex. The really big flow 
of spikes arriving each instant (many millions every few milisec) are mixed and 
correlated with themselves and with other top-down and bottom-up preexisting 
flows in multiple neural mappings... and further, when those flows mix with the 
association areas under the influence of languaje, then, and only then, all 
those logic and conceptual categorizations of human thought are enacted in the 
ephemeral synaptic networks. 

I am optimistic that  a new Heraclitean way of thinking boils down in network 
science, neuroinformatics, systems biology, bioinformation etc. Neither the 
Parmenidean eliminative fixism of classical reductionists, nor the 
Aristotelian organicism of systemicists. Say that this is a caricature. However 
you cannot bathe twice in the same river not just because we all are caught 
into the universal physical flow of photons and forces, but for the 
Heraclitean flux of our own neurons and brains, for the inner torrents of the 
aggregated information flows. The same for whatever cells, societies, etc. and 
their physical structures for info transportation. 

Either we produce an interesting new vision of the world, finally making sense 
of those perennial metaphors among the different (informational) realms, or 
information science will continue to be that small portion of incoherent 
patches more or less close to information theory or to artificial intelligence. 
In spite of decades of bla-bla- about information revolution and information 
society and tons of ad hoc literature, the educated thought of our contemporary 
society continues to be deeply mechanistic! 

Why?

best wishes

---Pedro


 
     -snip-
 
     I think it of some interest that I have 
 previously ( 2006  On
     Aristotle’s conception of causality.  
 General Systems Bulletin 35:
     11.) proposed that the Aristotelian 'formal 
 cause' determines both
     'what happens' and 'how it happens', and that 
 the combination of
     this with material cause ('what it happens 
 to') delivers 'where' it
     happens.
 
     (For completeness sake I add that efficient 
 cause determines only
     'when it happens', while final cause points 
 to 'why it happens'.  It
     would be quite exciting to find that these 
 informations were also
     carried on separate tracts.)
 
 
 It would be exciting, as that would seem to refute the 
 Aristotelean idea 
 of the four causes as four aspects of all causation. However an 
 information channel can carry some part of the information from 
 its 
 source, which would be a sort of filter or abstraction of the 
 source. 
 So, for example, a channel might be sensitive only to the how, 
 but not 
 the what, and vice versa. A channel is fundamentally a mapping 
 of 
 classes from a source to a sink that through instances that 
 retain the 
 mapping (see Barwsie and Seligman, Information Flow: The Logic 
 of 
 Distributed Systems). So in this case, a channel sensitive to, 
 say, 
 what, would retain the what classifications of the source in a 
 way 
 that the sink could use, but perhaps not any other information. 
 The 
 channels themselves could still maintain all four aspects of 
 Aristotelean causation, so Aristotle need not be refuted. This 
 would 
 still be very interesting, though. I am unclear what functional 
 advantage there would be, though we certainly manage to separate 
 these 
 causes in much of our thinking (perhaps even, we can't help it).
 
 Cheers,
 John
 
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 http://www.ukzn.ac.za/disclaimer ===
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Re: [Fis] The Information Flow

2012-10-25 Thread Bill Seaman
Interesting Software
Best
Bill

http://www.kurzweilai.net/a-biology-friendly-robot-programming-language?utm_source=KurzweilAI+Daily+Newsletterutm_campaign=fb29857305-UA-946742-1utm_medium=email

http://parpar.jbei.org
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Re: [Fis] The Information Flow

2012-10-21 Thread PEDRO CLEMENTE MARIJUAN FERNANDEZ
Dear FISers,

Continuing with the comments on the how versus the what, it is an important 
topic in mammalian (vertebrate) nervous systems. They are subtended by mostly 
separate neural tracts (though partially interconnected), it is the dorsal 
stream, specialized in the how  where, and the ventral stream stream about the 
what. In the case of C elegans, endowed with one of the simplest invertebrate 
nervous systems, I do not know whether the previous distinction makes sense 
there. The what, the identity of the object is in this case heavily 
dependendent on the genetic wiring of axons and on specialized  molecular 
receptors... But whatever the case, both the what and the how/where resolve in 
flows of electrical discharges through a series of neural networks. They are 
but the same flux of evanescent stuff, several hundred of spikes flowing for a 
few seconds.

About the deterministic outlook of both models, the cellular and the neuronal, 
I think there is an important problem of bulk complexity non tractable at the 
time being. Putting in stochastic form those hundreds of coupled differential 
equations with the whole cellular kinetics becomes too tough a demand. During 
these weeks we have also witnessed the resolution of the ENCODE project, what 
looks quite worryings is the highly specialized nature of the numeorus results, 
almost unreadable except for people with a strong background in bioinformatics 
and systems biology. People outside the field, theoretical biologists for 
instance, will have a very difficult time. Are we witnessing the birth of 
another esoteric realm like particle physics? Bad news for bio-information 
afficionados indeed.

These milestones, and similar ones during very recent years (in network 
science specially), whatever their virtues and defects, have dramatically 
altered our information science panorama. One of the things we can do, in my 
view, is to carefully explore the concepts related to information flows. 
Cellularly, Neurally, Socially, the respective information items generally 
travel in waves, along channels that self-modify with the ongoing flux, and 
continuously alter the respective material/informational structures in 
communication.  Does it make sense contemplating the neuron as an information 
flow entity? I think so. And the people within an organization too.

Somehow, the challenge is to bring a corpus of fundamental ideas in line with 
the complex communication experiences of our time (and of all times!)

best greetings

---Pedro 

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Re: [Fis] The Information Flow

2012-10-21 Thread Stanley N Salthe
Pedro -- it is of interest to me that

On Sun, Oct 21, 2012 at 3:38 PM, PEDRO CLEMENTE MARIJUAN FERNANDEZ 
pcmarijuan.i...@aragon.es wrote:

 Dear FISers,

 Continuing with the comments on the how versus the what, it is an
 important topic in mammalian (vertebrate) nervous systems. They are
 subtended by mostly separate neural tracts (though partially
 interconnected), it is the dorsal stream, specialized in the how  where,
 and the ventral stream stream about the what.

-snip-

I think it of some interest that I have previously ( 2006  On Aristotle’s
conception of causality.  General Systems Bulletin 35: 11.) proposed that
the Aristotelian 'formal cause' determines both 'what happens' and 'how it
happens', and that the combination of this with material cause ('what it
happens to') delivers 'where' it happens.

(For completeness sake I add that efficient cause determines only 'when it
happens', while final cause points to 'why it happens'.  It would be quite
exciting to find that these informations were also carried on separate
tracts.)

STAN



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Re: [Fis] The Information Flow

2012-10-16 Thread John Collier


Good point, Stan. I think that it can be used to create a notion of
'knowing that', but it will require at least another level. I review some
ways to do this in

Explaining Biological Functionality: Is Control Theory Enough? South
African Journal of Philosophy. 2011, 30(4): 53-62. The main references
are more directly related to 'knowing that', but I would see 'knowing
that' as fulfilling a particular functional role,. and requiring
something like explicit representations, both of which I deal with in the
paper. I can see that there is a further paper to be written that takes
the step to the specific case of 'knowing that'.
Cheers,
John
At 03:38 PM 2012/10/15, Stanley N Salthe wrote:
On that curious definition
of knowledge, it looks like 'knowing how' rather than 'knowing
that'. 
STAN 
On Mon, Oct 15, 2012 at 11:56 AM, Pedro C. Marijuan

pcmarijuan.i...@aragon.es wrote:


Dear FIS Colleagues,

Thanks to Zhao Chuan for the Computer Poem/Song. It is a soft way
to

retake our discussions. These weeks there have been a couple of

important achievements in the bio-information field. On the one
side,

the first 'complete' model of a prokaryotic cell (A
Whole-Cell

Computational Model Predicts Phenotype from Genotype, by Karr
et al.,

Cell, 150, 389-401, 2012). On the other, there was the report of
another

'complete' scheme, that of the C. elegans nervous system, now at
the

level of individual synaptic contacts, which was able to explain
the

mating behavior of the worm (The Connectome of a
Decision-Making Neural

Network, by Jarrell et al., Science, 337, 437-444, 2012). It
contained

several references to the information flow through
interneurons and

sensorimotor circuits, and a very curious definition of knowledge
(as

the set of activity weights in an adjacency matrix of a neural
network,

upon which the network's input-output function in part
depends...).

Both papers are very interesting, relatively consistent with each
other,

and I think both represent symbolic milestones in the
bio-information

field. The point on information flows left me thinking on the
larger

perspective beyond single information items that we rarely focus
on.

Actually the first Shannonian information metaphor was about
sources

and channels --wasn't it? Particularly thinking on social
information

matters, how many aspects of contemporary life relate to the
maintenance

of the information flows intertwining and directing the economic
flows.

No doubt that the forces of communication have definitely
won the

upper hand upon the forces of production .

Somehow, Zhao Chuan's poem is but a celebration of the central role
that

computers have come to play in the gigantic information flows of our
time.

best wishes

--Pedro

--

-

Pedro C. Marijuán

Grupo de Bioinformación / Bioinformation Group

Instituto Aragonés de Ciencias de la Salud

Centro de Investigación Biomédica de Aragón (CIBA)

Avda. San Juan Bosco, 13, planta X

50009 Zaragoza, Spain

Tfno. +34 976 71 3526
( 6818)


pcmarijuan.i...@aragon.es



http://sites.google.com/site/pedrocmarijuan/

-

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colli...@ukzn.ac.za
Philosophy and Ethics, University of KwaZulu-Natal, Durban 4041 South
Africa
T: +27 (31) 260 3248 / 260 2292 F:
+27 (31) 260 3031
http
://web.ncf.ca/collier



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Re: [Fis] The Information Flow

2012-10-16 Thread Bill Seaman

How about Knowing Through…

How can we embody a neural network/learning system through multi-modal sensing?
b



Bill Seaman
Professor, Department of Art, Art History  Visual Studies
DUKE UNIVERSITY 
114 b East Duke Building
Box 90764   
Durham, NC 27708, USA   
+1-919-684-2499 
http://billseaman.com/
http://fds.duke.edu/db/aas/AAH/faculty/william.seaman
http://www.dibs.duke.edu/research/profiles/98-william-seaman




On Oct 15, 2012, at 2:38 PM, Stanley N Salthe ssal...@binghamton.edu wrote:

 On that curious definition of knowledge, it looks like 'knowing how' rather 
 than 'knowing that'.
 
 STAN 
 
 On Mon, Oct 15, 2012 at 11:56 AM, Pedro C. Marijuan 
 pcmarijuan.i...@aragon.es wrote:
 Dear FIS Colleagues,
 
 Thanks to Zhao Chuan for the Computer Poem/Song. It is a soft way to
 retake our discussions. These weeks there have been a couple of
 important achievements in the bio-information field. On the one side,
 the first 'complete' model of a prokaryotic cell (A Whole-Cell
 Computational Model Predicts Phenotype from Genotype, by Karr et al.,
 Cell, 150, 389-401, 2012). On the other, there was the report of another
 'complete' scheme, that of the C. elegans nervous system, now at the
 level of individual synaptic contacts, which was able to explain the
 mating behavior of the worm (The Connectome of a Decision-Making Neural
 Network, by Jarrell et al., Science, 337, 437-444, 2012). It contained
 several references to the information flow through interneurons and
 sensorimotor circuits, and a very curious definition of knowledge (as
 the set of activity weights in an adjacency matrix of a neural network,
 upon which the network's input-output function in part depends...).
 
 Both papers are very interesting, relatively consistent with each other,
 and I think both represent symbolic milestones in the bio-information
 field. The point on information flows left me thinking on the larger
 perspective beyond single information items that we rarely focus on.
 Actually the first Shannonian information metaphor was about sources
 and channels --wasn't it? Particularly thinking on social information
 matters, how many aspects of contemporary life relate to the maintenance
 of the information flows intertwining and directing the economic flows.
 No doubt that the forces of communication have definitely won the
 upper hand upon the forces of production .
 
 Somehow, Zhao Chuan's poem is but a celebration of the central role that
 computers have come to play in the gigantic information flows of our time.
 
 best wishes
 
 --Pedro
 
 --
 -
 Pedro C. Marijuán
 Grupo de Bioinformación / Bioinformation Group
 Instituto Aragonés de Ciencias de la Salud
 Centro de Investigación Biomédica de Aragón (CIBA)
 Avda. San Juan Bosco, 13, planta X
 50009 Zaragoza, Spain
 Tfno. +34 976 71 3526 ( 6818)
 pcmarijuan.i...@aragon.es
 http://sites.google.com/site/pedrocmarijuan/
 -
 
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Re: [Fis] The Information Flow (From Bob Ulanowicz)

2012-10-16 Thread Pedro C. Marijuan
(From Bob Ulanowicz)

*

Dear Pedro,

I am not familiar with either model. I am made uneasy, however, by the
deterministic nature of the model descriptions.

My concern is that networks in general are metaphors for the
amalgamation of constraint and indeterminacy. There are, of course,
degenerate forms of networks that are deterministic, or almost so.
Ontogeny in general is almost deterministic and that would be
reflected in their corresponding network descriptors. My worry is
that by focusing upon these degenerate cases we lose sight of the fact
that in living systems considered more broadly (e.g., ecological,
social and economic systems), the indeterminate plays a larger and
*obligatory* role in the persistence of the system.

The best,
Bob



- End forwarded message -


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[Fis] The Information Flow

2012-10-15 Thread Pedro C. Marijuan
Dear FIS Colleagues,

Thanks to Zhao Chuan for the Computer Poem/Song. It is a soft way to 
retake our discussions. These weeks there have been a couple of 
important achievements in the bio-information field. On the one side, 
the first 'complete' model of a prokaryotic cell (A Whole-Cell 
Computational Model Predicts Phenotype from Genotype, by Karr et al., 
Cell, 150, 389-401, 2012). On the other, there was the report of another 
'complete' scheme, that of the C. elegans nervous system, now at the 
level of individual synaptic contacts, which was able to explain the 
mating behavior of the worm (The Connectome of a Decision-Making Neural 
Network, by Jarrell et al., Science, 337, 437-444, 2012). It contained 
several references to the information flow through interneurons and 
sensorimotor circuits, and a very curious definition of knowledge (as 
the set of activity weights in an adjacency matrix of a neural network, 
upon which the network's input-output function in part depends...).

Both papers are very interesting, relatively consistent with each other, 
and I think both represent symbolic milestones in the bio-information 
field. The point on information flows left me thinking on the larger 
perspective beyond single information items that we rarely focus on. 
Actually the first Shannonian information metaphor was about sources 
and channels --wasn't it? Particularly thinking on social information 
matters, how many aspects of contemporary life relate to the maintenance 
of the information flows intertwining and directing the economic flows. 
No doubt that the forces of communication have definitely won the 
upper hand upon the forces of production .

Somehow, Zhao Chuan's poem is but a celebration of the central role that 
computers have come to play in the gigantic information flows of our time.

best wishes

--Pedro

-- 
-
Pedro C. Marijuán
Grupo de Bioinformación / Bioinformation Group
Instituto Aragonés de Ciencias de la Salud
Centro de Investigación Biomédica de Aragón (CIBA)
Avda. San Juan Bosco, 13, planta X
50009 Zaragoza, Spain
Tfno. +34 976 71 3526 ( 6818)
pcmarijuan.i...@aragon.es
http://sites.google.com/site/pedrocmarijuan/
-

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