[Freesurfer] WARNING: tcsh v6.17.06 has an exit code bug!
Hello everyone, I just updated to Freesurfer 5.3.0, my OS is Ubuntu 12.04. When I run 'recon-all -i T1 image -subjid subject name' I receive the following error: WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh! The directory structure appears to be set up correctly, and the command finishes without error. I do not receive this error when using Freesurfer 5.1.0. I have yet to run 'recon-all -all -subjid subject name' in 5.3.0. Any ideas on what produces this error? is it safe to ignore? Thanks in advance, Andrew ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] WARNING: tcsh v6.17.06 has an exit code bug!
Hi Andrew, It is expected that you would not see this warning with Freesurfer version 5.1. Its just a warning, but tcsh v6.17.06 on Ubuntu always returns exit code 0. This can be problematic for instances where recon-all encounters and error and should fail. If you ran recon-all and have all the expected files than you should be all set. I believe you can use the Ubuntu Update Manager tool to install the latest version tcsh. -Zeke On 05/30/2013 01:19 PM, Andrew Bock wrote: Hello everyone, I just updated to Freesurfer 5.3.0, my OS is Ubuntu 12.04. When I run 'recon-all -i T1 image -subjid subject name' I receive the following error: WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh! The directory structure appears to be set up correctly, and the command finishes without error. I do not receive this error when using Freesurfer 5.1.0. I have yet to run 'recon-all -all -subjid subject name' in 5.3.0. Any ideas on what produces this error? is it safe to ignore? Thanks in advance, Andrew ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] WARNING: tcsh v6.17.06 has an exit code bug!
Thanks Zeke. To my knowledge tcsh v6.17.06 is the latest version of tcsh for Ubuntu 12.04 LTS, but I just discovered tcsh v6.18.01 is available for more recent versions of Ubuntu (e.g. Ubuntu 12.10, 13.04). If you (or anyone else) knows of any issues with tcsh v6.18.01 please let me know, otherwise I'll update to that version. Andrew On Thu, May 30, 2013 at 10:51 AM, Z K zkauf...@nmr.mgh.harvard.edu wrote: Hi Andrew, It is expected that you would not see this warning with Freesurfer version 5.1. Its just a warning, but tcsh v6.17.06 on Ubuntu always returns exit code 0. This can be problematic for instances where recon-all encounters and error and should fail. If you ran recon-all and have all the expected files than you should be all set. I believe you can use the Ubuntu Update Manager tool to install the latest version tcsh. -Zeke On 05/30/2013 01:19 PM, Andrew Bock wrote: Hello everyone, I just updated to Freesurfer 5.3.0, my OS is Ubuntu 12.04. When I run 'recon-all -i T1 image -subjid subject name' I receive the following error: WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh! The directory structure appears to be set up correctly, and the command finishes without error. I do not receive this error when using Freesurfer 5.1.0. I have yet to run 'recon-all -all -subjid subject name' in 5.3.0. Any ideas on what produces this error? is it safe to ignore? Thanks in advance, Andrew __**_ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurferhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**compliancelinehttp://www.partners.org/complianceline. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
