Hi Andrew, It is expected that you would not see this warning with Freesurfer version 5.1.
Its just a warning, but tcsh v6.17.06 on Ubuntu always returns exit code 0. This can be problematic for instances where recon-all encounters and error and should fail. If you ran recon-all and have all the expected files than you should be all set. I believe you can use the Ubuntu Update Manager tool to install the latest version tcsh. -Zeke On 05/30/2013 01:19 PM, Andrew Bock wrote: > Hello everyone, > > I just updated to Freesurfer 5.3.0, my OS is Ubuntu 12.04. When I run > 'recon-all -i <T1 image> -subjid <subject name>' I receive the following > error: > > WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh! > > The directory structure appears to be set up correctly, and the command > finishes without error. I do not receive this error when using > Freesurfer 5.1.0. I have yet to run 'recon-all -all -subjid <subject > name>' in 5.3.0. Any ideas on what produces this error? is it safe to > ignore? > > Thanks in advance, > > Andrew > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
