Thanks Zeke. To my knowledge tcsh v6.17.06 is the latest version of tcsh for Ubuntu 12.04 LTS, but I just discovered tcsh v6.18.01 is available for more recent versions of Ubuntu (e.g. Ubuntu 12.10, 13.04). If you (or anyone else) knows of any issues with tcsh v6.18.01 please let me know, otherwise I'll update to that version.
Andrew On Thu, May 30, 2013 at 10:51 AM, Z K <zkauf...@nmr.mgh.harvard.edu> wrote: > Hi Andrew, > > It is expected that you would not see this warning with Freesurfer version > 5.1. > > Its just a warning, but tcsh v6.17.06 on Ubuntu always returns exit code > 0. This can be problematic for instances where recon-all encounters and > error and should fail. If you ran recon-all and have all the expected files > than you should be all set. > > I believe you can use the Ubuntu Update Manager tool to install the latest > version tcsh. > > -Zeke > > > > > > On 05/30/2013 01:19 PM, Andrew Bock wrote: > >> Hello everyone, >> >> I just updated to Freesurfer 5.3.0, my OS is Ubuntu 12.04. When I run >> 'recon-all -i <T1 image> -subjid <subject name>' I receive the following >> error: >> >> WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh! >> >> The directory structure appears to be set up correctly, and the command >> finishes without error. I do not receive this error when using >> Freesurfer 5.1.0. I have yet to run 'recon-all -all -subjid <subject >> name>' in 5.3.0. Any ideas on what produces this error? is it safe to >> ignore? >> >> Thanks in advance, >> >> Andrew >> >> >> >> >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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