Hi Nate,
Excellent to hear! I will stay tuned for this most welcome update. In the
meantime, I welcome any other user's input on their solutions :)
Cheers,
Jason
-
Jason Gallant, Ph.D.
Postdoctoral Research Associate
Department of Biology
BRB 224, 5 Cummington Street
Boston University
Boston, MA 02215
Lab: 617-358-4590
Office: 617-358-3291
www.jgallant.org
On Jun 8, 2012, at 4:21 PM, Nate Coraor wrote:
On Jun 4, 2012, at 4:26 PM, Gallant, Jason wrote:
Greetings Galaxy Devs!
I've been doing a fair amount of poking around in the forums and on the wiki
but haven't found a satisfying answer to my query...
Has anyone come up with a workable solution to run jobs from a local
installation of galaxy on a campus cluster or on XSEDE/TeraGrid? While it
might be possible for us (though probably a headache) to install galaxy on
one of the head nodes on campus, it seems very unlikely for me to be able to
do this on something like this on a resource such as blacklight.
Hi Jason,
There's work under way for Galaxy to support resources at a higher level so
that it doesn't need direct access to a cluster or a shared filesystem. This
would include support for XSEDE resources. We hope to complete it this
summer.
In addition, some people on this list have made their own modifications to
Galaxy to support environments like this, so perhaps some of them will post
up with their solutions.
--nate
It seems that over the years past there have been a few mentions different
strategies taken to accomplish something like this, but the details on this
seem scarce. If this is something that someone on the list has worked out,
does anyone have time to describe their setup in more detail?
More generally, are there plans in the Galaxy roadmap to include this as a
potential feature in future releases? It seems that many small labs like
ours would find this feature quite useful.
Appreciative of any help you might be able to provide-- keep up the great
work Galaxy developers!
-
Jason Gallant, Ph.D.
Postdoctoral Research Associate
Department of Biology
BRB 224, 5 Cummington Street
Boston University
Boston, MA 02215
Lab: 617-358-4590
Office: 617-358-3291
www.jgallant.org
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