Re: trac #411: Align SNOW SHRINE terminology with ACT ontology for interoperation of query

[GPC Informatics]

#411: Align SNOW SHRINE terminology with ACT ontology for interoperation of 
query
--+--
 Reporter:  Dan Connolly  |   Owner:  Jim Campbell
 Type:  enhancement   |  Status:  assigned
 Priority:  major |   Milestone:  snow-shrine-3
Component:  data-stds |  Resolution:
 Keywords:  ModelMashup   |  Blocked By:  23, 90, 201, 243, 280, 525, 583
 Blocking:|   Sensitive:  1
--+--

Comment (by Dan Connolly):

 Replying to [comment:39 Dan Connolly]:
 > ...
 >   Nebraska is Working on it [covid19 SHRINE] internally, not as part of
 ACT network yet; doing harmonization work with them to align ontologies.
 Work group meeting third Thursday of every month.

 Dr. Campbell, would you care to summarize progress since our Apr 28
 discussion?

 Also, is the [https://dbmi-pitt.github.io/ACT-
 Network/data_harmonization.html Data Harmonization Workgroup] the relevant
 group?

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Re: trac #411: Align SNOW SHRINE terminology with ACT ontology for interoperation of query

[GPC Informatics]

#411: Align SNOW SHRINE terminology with ACT ontology for interoperation of 
query
--+--
 Reporter:  Dan Connolly  |   Owner:  Jim Campbell
 Type:  enhancement   |  Status:  assigned
 Priority:  major |   Milestone:  snow-shrine-3
Component:  data-stds |  Resolution:
 Keywords:  ModelMashup   |  Blocked By:  23, 90, 201, 243, 280, 525, 583
 Blocking:|   Sensitive:  1
--+--

Comment (by Dan Connolly):

 MCW received it.

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Re: trac #411: Align SNOW SHRINE terminology with ACT ontology for interoperation of query

[GPC Informatics]

#411: Align SNOW SHRINE terminology with ACT ontology for interoperation of 
query
--+--
 Reporter:  Dan Connolly  |   Owner:  Jim Campbell
 Type:  enhancement   |  Status:  assigned
 Priority:  major |   Milestone:  snow-shrine-3
Component:  data-stds |  Resolution:
 Keywords:  ModelMashup   |  Blocked By:  23, 90, 201, 243, 280, 525, 583
 Blocking:|   Sensitive:  1
--+--

Comment (by Dan Connolly):

 UNMC to send the updated ontology (RxNorm, SNOMED-CT, LOINC, ICD-10CM) to
 MCW, and Intermountain

 (from Sep 15 gpc-dev meeting)

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Re: trac #411: Align SNOW SHRINE terminology with ACT ontology for interoperation of query

[GPC Informatics]

#411: Align SNOW SHRINE terminology with ACT ontology for interoperation of 
query
--+--
 Reporter:  Dan Connolly  |   Owner:  Jim Campbell
 Type:  enhancement   |  Status:  assigned
 Priority:  major |   Milestone:  snow-shrine-3
Component:  data-stds |  Resolution:
 Keywords:  ModelMashup   |  Blocked By:  23, 90, 201, 243, 280, 525, 583
 Blocking:|   Sensitive:  1
--+--

Comment (by Dan Connolly):

 We (Lav and I) are in receipt of medication_metadata.zip (53804323 bytes).
 Thanks, Jim and co.

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Re: trac #411: Align SNOW SHRINE terminology with ACT ontology for interoperation of query

[GPC Informatics]

#411: Align SNOW SHRINE terminology with ACT ontology for interoperation of 
query
--+--
 Reporter:  Dan Connolly  |   Owner:  Jim Campbell
 Type:  enhancement   |  Status:  assigned
 Priority:  major |   Milestone:  snow-shrine-3
Component:  data-stds |  Resolution:
 Keywords:  ModelMashup   |  Blocked By:  23, 90, 201, 243, 280, 525, 583
 Blocking:|   Sensitive:  1
--+--

Comment (by Dan Connolly):

 JRC will investigate comment:38 and report back. (from 31 Mar call)

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Re: trac #411: Align SNOW SHRINE terminology with ACT ontology for interoperation of query

[GPC Informatics]

#411: Align SNOW SHRINE terminology with ACT ontology for interoperation of 
query
--+--
 Reporter:  Dan Connolly  |   Owner:  Jim Campbell
 Type:  enhancement   |  Status:  assigned
 Priority:  major |   Milestone:  snow-shrine-3
Component:  data-stds |  Resolution:
 Keywords:  ModelMashup   |  Blocked By:  23, 90, 201, 243, 280, 525, 583
 Blocking:|   Sensitive:  1
--+--
Changes (by Dan Connolly):

 * cc: lpatel@… (added)
 * sensitive:   => 1


Comment:

 Jim, I'm struggling to find the i2b2 metadata for medications in the
 Nebraska Lexicon.

 I downloaded `Publication_Files_20190816.zip` via ​https://www.unmc.edu
 /pathology-research/bioinformatics/campbell/tdc.html ; I don't see any
 i2b2 metadata in there.

 The cover page says that zip file includes release notes, but I don't see
 them in there. So I downloaded
 `Nebraska_Lexicon_Release_Notes_20190817.pdf`; neither "i2b2" nor "SHRINE"
 occurs in there.

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