Re: [HCP-Users] Questions on libnetcdf.so.6 and HCP custom version of FreeSurfer (5.3.0-HCP)

[Glasser, Matthew]

Soon we should have a version compatible with FS 6.0+

Matt.

From: 
mailto:hcp-users-boun...@humanconnectome.org>>
 on behalf of Georgios Michalareas mailto:g...@ae.mpg.de>>
Date: Tuesday, October 16, 2018 at 4:49 AM
To: "hcp-users@humanconnectome.org" 
mailto:HCP-Users@humanconnectome.org>>
Subject: [HCP-Users] Questions on libnetcdf.so.6 and HCP custom version of 
FreeSurfer (5.3.0-HCP)


Hi,

We are trying to run the latest version of HCP pipelines on a Centos 7 machine.

According to instructions we are using HCP custom version of FreeSurfer 
(5.3.0-HCP).

Pipeline crashed when running
mris_make_surfaces



with error
mris_make_surfaces: error while loading shared libraries: libnetcdf.so.6: 
cannot open shared object file: No such file or directory



I found the previous thread on this issue

https://www.mail-archive.com/hcp-users@humanconnectome.org/msg00782.html



I have 2 questions:



  *   Where can we find the right rpm for installing libnetcdf.so.6 on Centos 7 
?



  *   If we don’t use the HCP custom version of FreeSurfer (5.3.0-HCP), but the 
normal one that does not require libnetcdf.so.6, what would be the effect on 
the resulted cortical representation?



Thank you very much

Best

Giorgos


___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users


The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.

___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users

[HCP-Users] Questions on libnetcdf.so.6 and HCP custom version of FreeSurfer (5.3.0-HCP)

[Georgios Michalareas]

Hi,

We are trying to run the latest version of HCP pipelines on a Centos 7 machine.

According to instructions we are using HCP custom version of FreeSurfer 
(5.3.0-HCP).

Pipeline crashed when running 

mris_make_surfaces

 

with error

mris_make_surfaces: error while loading shared libraries: libnetcdf.so.6: 
cannot open shared object file: No such file or directory

 

I found the previous thread on this issue

https://www.mail-archive.com/hcp-users@humanconnectome.org/msg00782.html

 

I have 2 questions:

 
Where can we find the right rpm for installing libnetcdf.so.6 on Centos 7 ?
 
If we don’t use the HCP custom version of FreeSurfer (5.3.0-HCP), but the 
normal one that does not require libnetcdf.so.6, what would be the effect on 
the resulted cortical representation?
 

Thank you very much

Best 

Giorgos

 


___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users