Hi,
FSL/FEAT are not currently equipped to handle grayordinate data.
We have examples of a “third-level” (across subject) analyses as part of the
Practicals in the HCP Course. The content for the 2018 course (in June) will
hopefully become available online in the near future. Until then, the material
from the 2017 course is available, which covered the same basic content in this
regard:
https://store.humanconnectome.org/courses/2017/exploring-the-human-connectome.php
(see the “tfMRI and PALM” tutorial).
Cheers,
-MH
--
Michael Harms, Ph.D.
---
Associate Professor of Psychiatry
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave.Tel: 314-747-6173
St. Louis, MO 63110 Email: mha...@wustl.edu
From: on behalf of "Linnman,
Clas,Ph.D."
Date: Monday, August 20, 2018 at 11:00 AM
To: "hcp-users@humanconnectome.org"
Subject: [HCP-Users] help on Simple higher level FEAT analysis
Hi,
I am trying to do a simple higher level FEAT analysis on some task fMRI data.
I would like to correlate a variable to the motor responses.
From
https://wiki.humanconnectome.org/display/PublicData/Advice+for+FEAT+Analysis+of+HCP+task+fMRI+data
I tried the following
Higher-level Analysis
FEAT GUI, choose that "Inputs are lower-level FEAT directories". Under "Select
FEAT directories", for each participant in your group analysis, enter the paths
to the .feat directories for the specific lower-level cope of interest (e.g.,
/myDATA/100307/MNINonLinear/Results/tfMRI_MOTOR/tfMRI_MOTOR_hp200_s2_level2.feat/GrayordinatesStats/cope13.feat
FSL then tells me it can not find the design.fsl file in the directory
But if I chose the above directory as the input
(/myDATA/100307/MNINonLinear/Results/tfMRI_MOTOR/tfMRI_MOTOR_hp200_s2_level2.feat)
FSL tells me the directory contains no stats/cope image
Is there an example on how to do this?
Thanks
Clas
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