[Jmol-users] Jmol-14.4.1_2016.01.15-binary.tar.gz not available from sourceforge

[Peter Brommer]

Hi all,

apparently the .tar.gz of the latest Jmol binary (14.4.1_2016.01.15) is not 
available from sourceforge. This is a pity, because the Macports version of 
Jmol relies on that being available, and so I cannot update the mac port of 
Jmol to its current version. Could someone please make that file 
Jmol-14.4.1_2016.01.15-binary.tar.gz available for download? Cheers!

If you plan on not making tar.gz files available for whatever possible reason, 
I’d appreciate a quick reply. In that case I could update the Port to use the 
.zip file instead.

Thank you,

Peter 
-- 
---
Dr Peter Brommer  —  e-mail: p.brom...@warwick.ac.uk
Assistant Professor, Centre for Predictive Modelling
School of Engineering, University of Warwick, Library Road, Coventry CV4 7AL, UK
Office: D208 — Phone: +44 (0) 24 765 28613
Homepage: http://www.warwick.ac.uk/pbrommer
PGP Key: 2048R/B6DEA483 Fingerprint: 5B6F F30A  79C0 16CD 939E B406 9D2A 
B6DE A483


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Re: [Jmol-users] Is it possible to combine Jmol script and PDB file into a single file?

[Angel Herráez]

Hi Ashok 

> Is it possible to combine Jmol script and PDB file into a single file and 
> load it into JSmol? 

It is, indeed
http://wiki.jmol.org/index.php/File_formats/Scripting#Script_inline_within_a_
molecular_coordinates_file

or you prepare everything in the Jmol application and then export to PNGJ, 
which will contain the pdf file data and the state script

write PNGJ
write JMOL
write ZIPALL




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[Jmol-users] Is it possible to combine Jmol script and PDB file into a single file?

[T. Ashok Kumar]

Is it possible to combine Jmol script and PDB file into a single file and
load it into JSmol?

-- 
*T. Ashok Kumar*
Head, Department of Bioinformatics
Noorul Islam College of Arts and Science
Kumaracoil, Thuckalay - 629 180
Kanyakumari District, INDIA
Mobile:- 00 91 9655307178
*E-Mail:* *ashok.bioinformat...@gmail.com *,
 *as...@biogem.org *
*Website:* *www.biogem.org *
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Re: [Jmol-users] Is it possible to combine Jmol script and PDB file into a single file?

[T. Ashok Kumar]

Hi Angel Herráez,

Thank you... Got the solution.

data "*model* docking"
:
:

:
:
end "model docking";
show data;



But, it seems the word "model " is compulsory.

-- 
*T. Ashok Kumar*
Head, Department of Bioinformatics
Noorul Islam College of Arts and Science
Kumaracoil, Thuckalay - 629 180
Kanyakumari District, INDIA
Mobile:- 00 91 9655307178
*E-Mail:* *ashok.bioinformat...@gmail.com *,
 *as...@biogem.org *
*Website:* *www.biogem.org *
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Re: [Jmol-users] Jmol on Maven Central

[Mark Williamson]

On 31/12/15 13:46, Nicolas Vervelle wrote:
> Hi Mark,
>
> I'm probably the one who deployed the old version a long time ago (or
> Bob, not sure).
> I'm currently way too busy on various matters to keep doing releases for
> Jmol.
>
> I think having a volunteer to deal with releases on Maven central would
> be very helpful. Anyone interested ?
> There are some ant scripts in Jmol source code to deploy there, but they
> haven't been used in a very long time.
> So, first thing would be to check if they still work correctly (probably
> by testing snapshots releases), and then try to find which SVN revision
> should be deployed as a given version.
>
> Nico
>

Dear Nico,

Apologies for the delay in responding. Thank you for the reply and 
useful information. Egon (offlist) mentioned a script at:

 
https://sourceforge.net/p/jmol/code/HEAD/tree/trunk/Jmol/tools/jmol-sonatype.xml

which I assume is the one that you refer to.

I have had experience deploying Maven projects to maven 
central(http://search.maven.org/#search|ga|1|oscar4  and 
http://search.maven.org/#search|ga|1|fortranformat ), however I think I 
can probably grok how the script above works within an ant context.

I'm happy to try to deploy this, but there is an issue. In order to 
deploy to Maven central with GroupId net.sourceforge.jmol, I will 
probably need some authorisation from the Maven central admin peeps. 
IIRC the person who originally deployed these will receive an email 
asking if this is OK.

Secondly, from the tags on the project 
(http://sourceforge.net/p/jmol/code/HEAD/tree/tags/) I cannot ascertain 
which one I should deploy.

Thanks,

Mark

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