Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-31 Thread Ralf Gommers
On Mon, May 31, 2010 at 8:23 AM, Charles R Harris charlesr.har...@gmail.com
 wrote:



 On Sun, May 30, 2010 at 5:53 PM, Ralf Gommers ralf.gomm...@googlemail.com
  wrote:



 On Mon, May 31, 2010 at 2:06 AM, Charles R Harris 
 charlesr.har...@gmail.com wrote:


 Hey, I thought that was your job ;) Maybe the best thing is to start by
 making a branch for the removal and we can argue about who gets the short
 end of the stick later...

 Manage the release yes, do the heavy lifting not necessarily:) OK, I'll
 make the branch tonight.

 If the removal just involves the same changes that were made for 1.4.1
 then I can do it. But I'm not familiar with this code and if it's more work,
 I probably won't have time for it between the scipy 0.8.0 release and my
 'real job', like you call it.


 I think it may be a bit trickier because Travis made more changes. I think
 the relevant commits are r8113..r8115 and 8107..8108. After removing those
 we still need to remove the same stuff as we did for the 1.4.1 release. We
 will need some way of testing if the removal was successful.


That still looks like it's not an insane amount of work.

We probably want to make sure there is a documentation update also, maybe
 before making the branch.

 I checked and there's not too much to merge, most of the changes (
http://docs.scipy.org/numpy/patch/) don't apply cleanly or at all. The
latter because they're docs for constants, lists, etc.

The biggest chuck of recent changes is for the polynomial and chebyshev
docs, can you give your opinion on those Charles? The OK to Apply is set to
True for all of them, but I'm not sure who did that. The patch generation
won't work for many of those docs, so if you could check if any docs should
be merged manually right now that would be useful.

@ David G: there are some conflicts in docs you recently edited,
http://docs.scipy.org/numpy/merge/. Would you mind resolving those?

Thanks,
Ralf
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-31 Thread Charles R Harris
On Mon, May 31, 2010 at 4:54 AM, Ralf Gommers
ralf.gomm...@googlemail.comwrote:



 On Mon, May 31, 2010 at 8:23 AM, Charles R Harris 
 charlesr.har...@gmail.com wrote:



 On Sun, May 30, 2010 at 5:53 PM, Ralf Gommers 
 ralf.gomm...@googlemail.com wrote:



 On Mon, May 31, 2010 at 2:06 AM, Charles R Harris 
 charlesr.har...@gmail.com wrote:


 Hey, I thought that was your job ;) Maybe the best thing is to start by
 making a branch for the removal and we can argue about who gets the short
 end of the stick later...

 Manage the release yes, do the heavy lifting not necessarily:) OK, I'll
 make the branch tonight.

 If the removal just involves the same changes that were made for 1.4.1
 then I can do it. But I'm not familiar with this code and if it's more work,
 I probably won't have time for it between the scipy 0.8.0 release and my
 'real job', like you call it.


 I think it may be a bit trickier because Travis made more changes. I think
 the relevant commits are r8113..r8115 and 8107..8108. After removing those
 we still need to remove the same stuff as we did for the 1.4.1 release. We
 will need some way of testing if the removal was successful.


 That still looks like it's not an insane amount of work.

 We probably want to make sure there is a documentation update also, maybe
 before making the branch.

 I checked and there's not too much to merge, most of the changes (
 http://docs.scipy.org/numpy/patch/) don't apply cleanly or at all. The
 latter because they're docs for constants, lists, etc.

 The biggest chuck of recent changes is for the polynomial and chebyshev
 docs, can you give your opinion on those Charles? The OK to Apply is set to
 True for all of them, but I'm not sure who did that.


I'll go have a look. David (G) worked with me off-line so I expect they are
generally OK. The markup seems a bit excessive to me, but that is probably a
tradeoff between the appearance of the generated docs and the terminal help.
I don't know what is standard practice there these days.


 The patch generation won't work for many of those docs, so if you could
 check if any docs should be merged manually right now that would be useful.


The {Chebyshev, Polynomial} documentation that has conflicts can't be edited
on the web, as they reference documents generated from a template at module
load time. I'll fix that at some point, but at the moment it is easier to
maintain one template than to maintain two separate versions. I'll hand
merge anything there that looks appropriate.

@ David G: there are some conflicts in docs you recently edited,
 http://docs.scipy.org/numpy/merge/. Would you mind resolving those?


Chuck
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-31 Thread David Goldsmith
On Mon, May 31, 2010 at 3:54 AM, Ralf Gommers
ralf.gomm...@googlemail.comwrote:



 On Mon, May 31, 2010 at 8:23 AM, Charles R Harris 
 charlesr.har...@gmail.com wrote:



 On Sun, May 30, 2010 at 5:53 PM, Ralf Gommers 
 ralf.gomm...@googlemail.com wrote:



 On Mon, May 31, 2010 at 2:06 AM, Charles R Harris 
 charlesr.har...@gmail.com wrote:


 Hey, I thought that was your job ;) Maybe the best thing is to start by
 making a branch for the removal and we can argue about who gets the short
 end of the stick later...

 Manage the release yes, do the heavy lifting not necessarily:) OK, I'll
 make the branch tonight.

 If the removal just involves the same changes that were made for 1.4.1
 then I can do it. But I'm not familiar with this code and if it's more work,
 I probably won't have time for it between the scipy 0.8.0 release and my
 'real job', like you call it.


 I think it may be a bit trickier because Travis made more changes. I think
 the relevant commits are r8113..r8115 and 8107..8108. After removing those
 we still need to remove the same stuff as we did for the 1.4.1 release. We
 will need some way of testing if the removal was successful.


 That still looks like it's not an insane amount of work.

 We probably want to make sure there is a documentation update also, maybe
 before making the branch.

 I checked and there's not too much to merge, most of the changes (
 http://docs.scipy.org/numpy/patch/) don't apply cleanly or at all. The
 latter because they're docs for constants, lists, etc.

 The biggest chuck of recent changes is for the polynomial and chebyshev
 docs, can you give your opinion on those Charles? The OK to Apply is set to
 True for all of them, but I'm not sure who did that. The patch generation
 won't work for many of those docs, so if you could check if any docs should
 be merged manually right now that would be useful.

 @ David G: there are some conflicts in docs you recently edited,
 http://docs.scipy.org/numpy/merge/. Would you mind resolving those?


Nothing to resolve: those docstrings are generated via a template and should
not be modified via the wiki at all - any differences between what's in the
wiki and svn are inadvertent and can be ignored.

DG



 Thanks,
 Ralf


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set is non-empty, even if that set has measure zero.

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lies, prevents mankind from committing a general suicide.  (As interpreted
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-30 Thread Ralf Gommers
On Sat, May 29, 2010 at 9:05 AM, Pauli Virtanen p...@iki.fi wrote:

 Fri, 28 May 2010 12:13:57 -0500, Travis Oliphant wrote:
 [clip]
  I think this makes sense so that we can reschedule NumPy 2.0 for
  September and still provide a release with the Python 3k changes (I am
  assuming these can be done in an ABI-compatible way).

 As far as I remember, the Py3 changes did not require breaking ABI (on
 Py2).

 Good. How much work is it to remove datetime, and who wants to do it?

Ralf
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-30 Thread Charles R Harris
On Sun, May 30, 2010 at 9:52 AM, Ralf Gommers
ralf.gomm...@googlemail.comwrote:



 On Sat, May 29, 2010 at 9:05 AM, Pauli Virtanen p...@iki.fi wrote:

 Fri, 28 May 2010 12:13:57 -0500, Travis Oliphant wrote:
 [clip]
  I think this makes sense so that we can reschedule NumPy 2.0 for
  September and still provide a release with the Python 3k changes (I am
  assuming these can be done in an ABI-compatible way).

 As far as I remember, the Py3 changes did not require breaking ABI (on
 Py2).

 Good. How much work is it to remove datetime, and who wants to do it?


Hey, I thought that was your job ;) Maybe the best thing is to start by
making a branch for the removal and we can argue about who gets the short
end of the stick later...

Chuck
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-30 Thread Ralf Gommers
On Mon, May 31, 2010 at 2:06 AM, Charles R Harris charlesr.har...@gmail.com
 wrote:



 On Sun, May 30, 2010 at 9:52 AM, Ralf Gommers ralf.gomm...@googlemail.com
  wrote:



 On Sat, May 29, 2010 at 9:05 AM, Pauli Virtanen p...@iki.fi wrote:

 Fri, 28 May 2010 12:13:57 -0500, Travis Oliphant wrote:
 [clip]
  I think this makes sense so that we can reschedule NumPy 2.0 for
  September and still provide a release with the Python 3k changes (I am
  assuming these can be done in an ABI-compatible way).

 As far as I remember, the Py3 changes did not require breaking ABI (on
 Py2).

 Good. How much work is it to remove datetime, and who wants to do it?


 Hey, I thought that was your job ;) Maybe the best thing is to start by
 making a branch for the removal and we can argue about who gets the short
 end of the stick later...

 Manage the release yes, do the heavy lifting not necessarily:) OK, I'll
make the branch tonight.

If the removal just involves the same changes that were made for 1.4.1 then
I can do it. But I'm not familiar with this code and if it's more work, I
probably won't have time for it between the scipy 0.8.0 release and my 'real
job', like you call it.

Cheers,
Ralf
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-30 Thread Charles R Harris
On Sun, May 30, 2010 at 5:53 PM, Ralf Gommers
ralf.gomm...@googlemail.comwrote:



 On Mon, May 31, 2010 at 2:06 AM, Charles R Harris 
 charlesr.har...@gmail.com wrote:



 On Sun, May 30, 2010 at 9:52 AM, Ralf Gommers 
 ralf.gomm...@googlemail.com wrote:



 On Sat, May 29, 2010 at 9:05 AM, Pauli Virtanen p...@iki.fi wrote:

 Fri, 28 May 2010 12:13:57 -0500, Travis Oliphant wrote:
 [clip]
  I think this makes sense so that we can reschedule NumPy 2.0 for
  September and still provide a release with the Python 3k changes (I am
  assuming these can be done in an ABI-compatible way).

 As far as I remember, the Py3 changes did not require breaking ABI (on
 Py2).

 Good. How much work is it to remove datetime, and who wants to do it?


 Hey, I thought that was your job ;) Maybe the best thing is to start by
 making a branch for the removal and we can argue about who gets the short
 end of the stick later...

 Manage the release yes, do the heavy lifting not necessarily:) OK, I'll
 make the branch tonight.

 If the removal just involves the same changes that were made for 1.4.1 then
 I can do it. But I'm not familiar with this code and if it's more work, I
 probably won't have time for it between the scipy 0.8.0 release and my 'real
 job', like you call it.


I think it may be a bit trickier because Travis made more changes. I think
the relevant commits are r8113..r8115 and 8107..8108. After removing those
we still need to remove the same stuff as we did for the 1.4.1 release. We
will need some way of testing if the removal was successful. We probably
want to make sure there is a documentation update also, maybe before making
the branch.

Chuck
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-28 Thread Travis Oliphant


On May 27, 2010, at 6:51 AM, Ralf Gommers wrote:




On Wed, May 26, 2010 at 12:23 PM, Travis Oliphant oliph...@enthought.com 
 wrote:


On May 25, 2010, at 5:06 PM, David Cournapeau wrote:

 On Wed, May 26, 2010 at 6:19 AM, Charles R Harris
 charlesr.har...@gmail.com wrote:

 Sounds good, but what if it doesn't get finished in a few months?  
I think we
 should get 2.0.0 out pronto, ideally it would already have been  
released. I
 think a major refactoring like this proposal should get the 3.0.0  
label.


 Naming it 3.0 or 2.1 does not matter much - I think we should avoid
 breaking things twice. I can see a few solutions:
  - postpone 2.0 indefinitely, until this new work is done
  - backport py3k changes to 1.5 (which would be API and ABI
 compatible with 1.4.1), and 2.0 would contain all the breaking
 changes.

This is an interesting idea and also workable.


 I am really worried about breaking things once now and once in a few
 months (or even a year).

I am too.  That's why this discussion.We will have the NumPy  
refactor done by end of July at the latest.   Numpy 2.0 should be  
able to come out in August.


This thread got a bit side-tracked with the move to git, but I don't  
see a conclusion about what to release when.


Even if the refactoring is done in July, I think a 2.0 release with  
so many major changes will probably need a longer test/release  
cycle. So if we say September, do you still want a 1.5 release?


I think this makes sense so that we can reschedule NumPy 2.0 for  
September and still provide a release with the Python 3k changes (I am  
assuming these can be done in an ABI-compatible way).


-Travis

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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-27 Thread Ralf Gommers
On Wed, May 26, 2010 at 12:23 PM, Travis Oliphant oliph...@enthought.comwrote:


 On May 25, 2010, at 5:06 PM, David Cournapeau wrote:

  On Wed, May 26, 2010 at 6:19 AM, Charles R Harris
  charlesr.har...@gmail.com wrote:
 
  Sounds good, but what if it doesn't get finished in a few months? I
 think we
  should get 2.0.0 out pronto, ideally it would already have been
 released. I
  think a major refactoring like this proposal should get the 3.0.0 label.
 
  Naming it 3.0 or 2.1 does not matter much - I think we should avoid
  breaking things twice. I can see a few solutions:
   - postpone 2.0 indefinitely, until this new work is done
   - backport py3k changes to 1.5 (which would be API and ABI
  compatible with 1.4.1), and 2.0 would contain all the breaking
  changes.

 This is an interesting idea and also workable.

 
  I am really worried about breaking things once now and once in a few
  months (or even a year).

 I am too.  That's why this discussion.We will have the NumPy refactor
 done by end of July at the latest.   Numpy 2.0 should be able to come out in
 August.

 This thread got a bit side-tracked with the move to git, but I don't see a
conclusion about what to release when.

Even if the refactoring is done in July, I think a 2.0 release with so many
major changes will probably need a longer test/release cycle. So if we say
September, do you still want a 1.5 release?

Cheers,
Ralf
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-27 Thread David Cournapeau
On Thu, May 27, 2010 at 8:51 PM, Ralf Gommers
ralf.gomm...@googlemail.com wrote:


 On Wed, May 26, 2010 at 12:23 PM, Travis Oliphant oliph...@enthought.com
 wrote:

 On May 25, 2010, at 5:06 PM, David Cournapeau wrote:

  On Wed, May 26, 2010 at 6:19 AM, Charles R Harris
  charlesr.har...@gmail.com wrote:
 
  Sounds good, but what if it doesn't get finished in a few months? I
  think we
  should get 2.0.0 out pronto, ideally it would already have been
  released. I
  think a major refactoring like this proposal should get the 3.0.0
  label.
 
  Naming it 3.0 or 2.1 does not matter much - I think we should avoid
  breaking things twice. I can see a few solutions:
   - postpone 2.0 indefinitely, until this new work is done
   - backport py3k changes to 1.5 (which would be API and ABI
  compatible with 1.4.1), and 2.0 would contain all the breaking
  changes.

 This is an interesting idea and also workable.

 
  I am really worried about breaking things once now and once in a few
  months (or even a year).

 I am too.  That's why this discussion.    We will have the NumPy refactor
 done by end of July at the latest.   Numpy 2.0 should be able to come out in
 August.

 This thread got a bit side-tracked with the move to git, but I don't see a
 conclusion about what to release when.

My understanding is that there was a general agreement on splitting
the code that breaks the ABI/API (datetime, maybe future refactoring)
from everything else (mostly py3k port):
 - 1.5: everything in the trunk minus API/ABI breaking stuff
 - 2.0: still in flux, depends on how the refactoring will happen

cheers,

David
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread David Goldsmith
On Tue, May 25, 2010 at 9:22 PM, Travis Oliphant oliph...@enthought.comwrote:


 On May 25, 2010, at 4:49 PM, David Goldsmith wrote:

 Travis: do you already have a place on the NumPy Development 
 Wikihttp://wiki.numpy.org/where you're (b)logging your design decisions?  
 Seems like a good way for
 concerned parties to monitor your choices in more or less real time and thus
 provide comment in a timely fashion.


 This is a great idea of course and we will definitely post progess there.



Thanks; specific URL please, when available; plus, prominently feature (a
link to) the location on the Development Wiki home page, at the very least
(i.e., if not also on the NumPy home page).


 So far, the code has been reviewed,


I.e., the existing code, yes?


 and several functions identified for re-factoring.


Please enumerate on the Wiki Refactoring Log (name tentative - I don't
care what we call it, just so long as it exists, its purpose is clear, and
we all know where it is).

This is taking place in a github branch of numpy called numpy refactor.


This = the actual creation/modification of code, yes?

DG


 -Travis


 DG

 On Tue, May 25, 2010 at 2:19 PM, Charles R Harris 
 charlesr.har...@gmail.com wrote:



 On Tue, May 25, 2010 at 2:54 PM, Travis Oliphant 
 oliph...@enthought.comwrote:


 On May 25, 2010, at 2:50 PM, Charles R Harris wrote:



 On Tue, May 25, 2010 at 1:37 PM, Travis Oliphant oliph...@enthought.com
  wrote:


 Hi everyone,

 There has been some talk about re-factoring NumPy to separate out the
 Python C-API layer and make NumPy closer to a C-library.   I know
 there are a few different ideas about what this means, and also that
 people are very busy.  I also know there is a NumPy 2.0 release that
 is in the works.

 I'm excited to let everyone know that we (at Enthought) have been able
 to find resources (about 3 man months) to work on this re-factoring
 project and Scott and Jason (both very experienced C and Python
 programmers) are actively pursuing it.My hope is that NumPy 2.0
 will contain this re-factoring (which should be finished just after
 SciPy 2010 --- where I'm going to organize a Sprint on NumPy which
 will include at least date-time improvements and re-factoring work).

 While we have specific goals for the re-factoring, we want this
 activity to be fully integrated with the NumPy community and Scott and
 Jason want to interact with the community as much as feasible as they
 suggest re-factoring changes (though they both have more experience
 with phone-conversations to resolve concerns than email chains and so
 some patience from everybody will be appreciated).

 Because Jason and Scott are new to this mailing list (but not new to
 NumPy),  I wanted to introduce them so they would feel more
 comfortable posting questions and people would have some context as to
 what they were trying to do.

 Scott and Jason are both very proficient and skilled programmers and I
 have full confidence in their abilities.   That said, we very much
 want the input of as many people as possible as we pursue the goal of
 grouping together more tightly the Python C-API interface layer to
 NumPy.

 I will be involved in some of the discussions, but am currently on a
 different project which has tight schedules and so I will only be able
 to provide limited mailing-list visibility.


 I think 2.0 would be a bit early for this. Is there any reason it
 couldn't be done in 2.1? What is the planned policy with regards to the
 visible interface for extensions? It would also be nice to have a rough idea
 of how the resulting code would be layered, i.e., what is the design for
 this re-factoring. Simply having a design would be a major step forward.


 The problem with doing it in 2.1 is that this re-factoring will require
 extensions to be re-built.   The visible interface to extensions will not
 change, but there will likely be ABI incompatibility.It seems prudent to
 do this in NumPy 2.0.   Perhaps we can also put in place the ABI-protecting
 indirection approaches that David C. was suggesting earlier.

 Some aspects of the design are still being fleshed out, but the basic
 idea is to separate out a core library that is as independent of the Python
 C-API as possible.There will likely be at least some dependency on the
 Python C-API (reference counting and error handling and possibly others)
 which any interface would have to provide in a very simple Python.h --
 equivalent, for example.

 Our purpose is to allow NumPy to be integrated with other languages or
 other frameworks systems without explicitly relying on CPython.There are
 a lot of questions as to how this will work, and so much of that is being
 worked out.   Part of the reason for this mail is to help ensure that as
 much of this discussion as possible takes place in public.


 Sounds good, but what if it doesn't get finished in a few months? I think
 we should get 2.0.0 out pronto, ideally it would already have been 

Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Sebastian Walter
I'm a potential user of the C-API and therefore I'm very interested in
the outcome.
In the previous discussion
(http://comments.gmane.org/gmane.comp.python.numeric.general/37409)
many different views on what the new C-API should be were expressed.

Naturally, I wonder if the new C-API will be useful for my purposes.
So,  I'm not so excited about a refactoring log where only the
progress is reported. I fear that some (potentially minor) design
decisions would render the new C-API useless for me.

So my question is:
Does this refactoring log also include something like a Numpy
Enhancement Proposal? Something that can be discussed beforehand?
I.e., will there be a detailed description (i.e. code examples) what
the goal of the refactoring is?

If there is any interest, I could provide some simple test examples in
C that would explain what I'd like to be able to do with the new
C-API.


Sebastian




On Wed, May 26, 2010 at 8:21 AM, David Goldsmith
d.l.goldsm...@gmail.com wrote:
 On Tue, May 25, 2010 at 9:22 PM, Travis Oliphant oliph...@enthought.com
 wrote:

 On May 25, 2010, at 4:49 PM, David Goldsmith wrote:

 Travis: do you already have a place on the NumPy Development Wiki where
 you're (b)logging your design decisions?  Seems like a good way for
 concerned parties to monitor your choices in more or less real time and thus
 provide comment in a timely fashion.

 This is a great idea of course and we will definitely post progess there.


 Thanks; specific URL please, when available; plus, prominently feature (a
 link to) the location on the Development Wiki home page, at the very least
 (i.e., if not also on the NumPy home page).


 So far, the code has been reviewed,

 I.e., the existing code, yes?


 and several functions identified for re-factoring.

 Please enumerate on the Wiki Refactoring Log (name tentative - I don't
 care what we call it, just so long as it exists, its purpose is clear, and
 we all know where it is).

 This is taking place in a github branch of numpy called numpy refactor.

 This = the actual creation/modification of code, yes?

 DG

 -Travis

 DG

 On Tue, May 25, 2010 at 2:19 PM, Charles R Harris
 charlesr.har...@gmail.com wrote:


 On Tue, May 25, 2010 at 2:54 PM, Travis Oliphant oliph...@enthought.com
 wrote:

 On May 25, 2010, at 2:50 PM, Charles R Harris wrote:


 On Tue, May 25, 2010 at 1:37 PM, Travis Oliphant
 oliph...@enthought.com wrote:

 Hi everyone,

 There has been some talk about re-factoring NumPy to separate out the
 Python C-API layer and make NumPy closer to a C-library.   I know
 there are a few different ideas about what this means, and also that
 people are very busy.  I also know there is a NumPy 2.0 release that
 is in the works.

 I'm excited to let everyone know that we (at Enthought) have been able
 to find resources (about 3 man months) to work on this re-factoring
 project and Scott and Jason (both very experienced C and Python
 programmers) are actively pursuing it.    My hope is that NumPy 2.0
 will contain this re-factoring (which should be finished just after
 SciPy 2010 --- where I'm going to organize a Sprint on NumPy which
 will include at least date-time improvements and re-factoring work).

 While we have specific goals for the re-factoring, we want this
 activity to be fully integrated with the NumPy community and Scott and
 Jason want to interact with the community as much as feasible as they
 suggest re-factoring changes (though they both have more experience
 with phone-conversations to resolve concerns than email chains and so
 some patience from everybody will be appreciated).

 Because Jason and Scott are new to this mailing list (but not new to
 NumPy),  I wanted to introduce them so they would feel more
 comfortable posting questions and people would have some context as to
 what they were trying to do.

 Scott and Jason are both very proficient and skilled programmers and I
 have full confidence in their abilities.   That said, we very much
 want the input of as many people as possible as we pursue the goal of
 grouping together more tightly the Python C-API interface layer to
 NumPy.

 I will be involved in some of the discussions, but am currently on a
 different project which has tight schedules and so I will only be able
 to provide limited mailing-list visibility.


 I think 2.0 would be a bit early for this. Is there any reason it
 couldn't be done in 2.1? What is the planned policy with regards to the
 visible interface for extensions? It would also be nice to have a rough 
 idea
 of how the resulting code would be layered, i.e., what is the design for
 this re-factoring. Simply having a design would be a major step forward.

 The problem with doing it in 2.1 is that this re-factoring will require
 extensions to be re-built.   The visible interface to extensions will not
 change, but there will likely be ABI incompatibility.    It seems prudent 
 to
 do this in NumPy 2.0.   Perhaps we can also put in place the ABI-protecting
 

Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Pauli Virtanen
Wed, 26 May 2010 10:50:19 +0200, Sebastian Walter wrote:
 I'm a potential user of the C-API and therefore I'm very interested in
 the outcome.
 In the previous discussion
 (http://comments.gmane.org/gmane.comp.python.numeric.general/37409) many
 different views on what the new C-API should be were expressed.

I believe the aim of the refactor is to *not* change the C-API at all, 
but separate it internally from the routines that do the heavy lifting. 
Externally, Numpy would still look the same, but be more easy to maintain.

The routines that do the heavy lifting could then be good for reuse and 
be more easy to maintain, but I think how and where they would be exposed 
hasn't been discussed so far...

-- 
Pauli Virtanen

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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Sebastian Walter
On Wed, May 26, 2010 at 12:31 PM, Pauli Virtanen p...@iki.fi wrote:
 Wed, 26 May 2010 10:50:19 +0200, Sebastian Walter wrote:
 I'm a potential user of the C-API and therefore I'm very interested in
 the outcome.
 In the previous discussion
 (http://comments.gmane.org/gmane.comp.python.numeric.general/37409) many
 different views on what the new C-API should be were expressed.

 I believe the aim of the refactor is to *not* change the C-API at all,
 but separate it internally from the routines that do the heavy lifting.
 Externally, Numpy would still look the same, but be more easy to maintain.

Sorry for the confusion. By C-API I meant a C-API that would be
independent of the CPython API.


 The routines that do the heavy lifting could then be good for reuse and
 be more easy to maintain, but I think how and where they would be exposed
 hasn't been discussed so far...

I had the impression that the goal is not only to have code that is
easier to maintain but to give developers the possibility to use numpy
functionality (broadcasting, ufuncs, ...) within C code without having
to use CPython API (refcounts, construction of PyObjects etc.).



 --
 Pauli Virtanen

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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Jarrod Millman
2010/5/25 Stéfan van der Walt ste...@sun.ac.za:
 Awesome! Since github now supports SVN interaction, and all the core
 devs use Git, now might be a good time to move the entire numpy source
 tree?  It will certainly make it easier to merge the refactor changes!

I would love to move numpy to github as well.  Almost everything I
work on is there now and I am really enjoying using git and the github
infrastructure is really nice.  This is obviously a separate issue and
one that shouldn't deflect the discussion on the proposed refactoring.
 But given how many of the developers are using git-svn and that you
can use an svn client with github, it might be worth having a quick
discussion about this in the near future.  For instance, I wonder how
many of the developer's prefer using git at this point.  Also it would
be interesting to hear from any of the developer's who would be
opposed to git.  A few year's ago this was a hot topic for discussion,
but it may be that this isn't very controversial at this point.

Jarrod
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Charles R Harris
On Wed, May 26, 2010 at 1:03 PM, Jarrod Millman mill...@berkeley.eduwrote:

 2010/5/25 Stéfan van der Walt ste...@sun.ac.za:
  Awesome! Since github now supports SVN interaction, and all the core
  devs use Git, now might be a good time to move the entire numpy source
  tree?  It will certainly make it easier to merge the refactor changes!

 I would love to move numpy to github as well.  Almost everything I
 work on is there now and I am really enjoying using git and the github
 infrastructure is really nice.  This is obviously a separate issue and
 one that shouldn't deflect the discussion on the proposed refactoring.
  But given how many of the developers are using git-svn and that you
 can use an svn client with github, it might be worth having a quick
 discussion about this in the near future.  For instance, I wonder how
 many of the developer's prefer using git at this point.  Also it would
 be interesting to hear from any of the developer's who would be
 opposed to git.  A few year's ago this was a hot topic for discussion,
 but it may be that this isn't very controversial at this point.


I think the main problem has been windows compatibility. Git is best from
the command line whereas the windows command line is an afterthought.
Another box that needs a check-mark is the buildbot. If svn clients are
supported then it may be that neither of those are going to be a problem.
However, It needs user testing.

Chuck
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Charles R Harris
On Wed, May 26, 2010 at 1:54 PM, Charles R Harris charlesr.har...@gmail.com
 wrote:



 On Wed, May 26, 2010 at 1:03 PM, Jarrod Millman mill...@berkeley.eduwrote:

 2010/5/25 Stéfan van der Walt ste...@sun.ac.za:
  Awesome! Since github now supports SVN interaction, and all the core
  devs use Git, now might be a good time to move the entire numpy source
  tree?  It will certainly make it easier to merge the refactor changes!

 I would love to move numpy to github as well.  Almost everything I
 work on is there now and I am really enjoying using git and the github
 infrastructure is really nice.  This is obviously a separate issue and
 one that shouldn't deflect the discussion on the proposed refactoring.
  But given how many of the developers are using git-svn and that you
 can use an svn client with github, it might be worth having a quick
 discussion about this in the near future.  For instance, I wonder how
 many of the developer's prefer using git at this point.  Also it would
 be interesting to hear from any of the developer's who would be
 opposed to git.  A few year's ago this was a hot topic for discussion,
 but it may be that this isn't very controversial at this point.


 I think the main problem has been windows compatibility. Git is best from
 the command line whereas the windows command line is an afterthought.
 Another box that needs a check-mark is the buildbot. If svn clients are
 supported then it may be that neither of those are going to be a problem.
 However, It needs user testing.


A newish git windows client I hadn't heard of before is
gitextensionshttp://code.google.com/p/gitextensions/
.

Chuck
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread David Cournapeau
On Thu, May 27, 2010 at 4:54 AM, Charles R Harris
charlesr.har...@gmail.com wrote:


 On Wed, May 26, 2010 at 1:03 PM, Jarrod Millman mill...@berkeley.edu
 wrote:

 2010/5/25 Stéfan van der Walt ste...@sun.ac.za:
  Awesome! Since github now supports SVN interaction, and all the core
  devs use Git, now might be a good time to move the entire numpy source
  tree?  It will certainly make it easier to merge the refactor changes!

 I would love to move numpy to github as well.  Almost everything I
 work on is there now and I am really enjoying using git and the github
 infrastructure is really nice.  This is obviously a separate issue and
 one that shouldn't deflect the discussion on the proposed refactoring.
  But given how many of the developers are using git-svn and that you
 can use an svn client with github, it might be worth having a quick
 discussion about this in the near future.  For instance, I wonder how
 many of the developer's prefer using git at this point.  Also it would
 be interesting to hear from any of the developer's who would be
 opposed to git.  A few year's ago this was a hot topic for discussion,
 but it may be that this isn't very controversial at this point.


 I think the main problem has been windows compatibility. Git is best from
 the command line whereas the windows command line is an afterthought.
 Another box that needs a check-mark is the buildbot. If svn clients are
 supported then it may be that neither of those are going to be a problem.
 However, It needs user testing.

As I mentioned in a previous post, there is smartgit, which is free
for personal use, and is a graphical UI (does *not* depend on the
mingw port of git, uses the reimplementation of git jgit in java used
in google for android I believe).

gitextensions is just a GUI around the mingw tools, and as such is
less reliable.

github also supports smart http for people behind proxies (although I
don't know about the authentification issues if any). Trac and
buildbot could use a svn mirror as provided by github for the time
being, although there seems to be an issue with the numpy repo ATM
(maybe my fault:
http://support.github.com/discussions/repos/3155-svn-checkout-error-200-ok-error)

David
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Travis Oliphant

On May 26, 2010, at 3:50 AM, Sebastian Walter wrote:

 I'm a potential user of the C-API and therefore I'm very interested in
 the outcome.
 In the previous discussion
 (http://comments.gmane.org/gmane.comp.python.numeric.general/37409)
 many different views on what the new C-API should be were expressed.

 Naturally, I wonder if the new C-API will be useful for my purposes.
 So,  I'm not so excited about a refactoring log where only the
 progress is reported. I fear that some (potentially minor) design
 decisions would render the new C-API useless for me.

 So my question is:
 Does this refactoring log also include something like a Numpy
 Enhancement Proposal? Something that can be discussed beforehand?
 I.e., will there be a detailed description (i.e. code examples) what
 the goal of the refactoring is?

 If there is any interest, I could provide some simple test examples in
 C that would explain what I'd like to be able to do with the new
 C-API.

Our team would love to see this if possible.

-Travis



 Sebastian




 On Wed, May 26, 2010 at 8:21 AM, David Goldsmith
 d.l.goldsm...@gmail.com wrote:
 On Tue, May 25, 2010 at 9:22 PM, Travis Oliphant oliph...@enthought.com 
 
 wrote:

 On May 25, 2010, at 4:49 PM, David Goldsmith wrote:

 Travis: do you already have a place on the NumPy Development Wiki  
 where
 you're (b)logging your design decisions?  Seems like a good way for
 concerned parties to monitor your choices in more or less real  
 time and thus
 provide comment in a timely fashion.

 This is a great idea of course and we will definitely post progess  
 there.


 Thanks; specific URL please, when available; plus, prominently  
 feature (a
 link to) the location on the Development Wiki home page, at the  
 very least
 (i.e., if not also on the NumPy home page).


 So far, the code has been reviewed,

 I.e., the existing code, yes?


 and several functions identified for re-factoring.

 Please enumerate on the Wiki Refactoring Log (name tentative - I  
 don't
 care what we call it, just so long as it exists, its purpose is  
 clear, and
 we all know where it is).

 This is taking place in a github branch of numpy called numpy  
 refactor.

 This = the actual creation/modification of code, yes?

 DG

 -Travis

 DG

 On Tue, May 25, 2010 at 2:19 PM, Charles R Harris
 charlesr.har...@gmail.com wrote:


 On Tue, May 25, 2010 at 2:54 PM, Travis Oliphant oliph...@enthought.com 
 
 wrote:

 On May 25, 2010, at 2:50 PM, Charles R Harris wrote:


 On Tue, May 25, 2010 at 1:37 PM, Travis Oliphant
 oliph...@enthought.com wrote:

 Hi everyone,

 There has been some talk about re-factoring NumPy to separate  
 out the
 Python C-API layer and make NumPy closer to a C-library.   I know
 there are a few different ideas about what this means, and also  
 that
 people are very busy.  I also know there is a NumPy 2.0 release  
 that
 is in the works.

 I'm excited to let everyone know that we (at Enthought) have  
 been able
 to find resources (about 3 man months) to work on this re- 
 factoring
 project and Scott and Jason (both very experienced C and Python
 programmers) are actively pursuing it.My hope is that NumPy  
 2.0
 will contain this re-factoring (which should be finished just  
 after
 SciPy 2010 --- where I'm going to organize a Sprint on NumPy  
 which
 will include at least date-time improvements and re-factoring  
 work).

 While we have specific goals for the re-factoring, we want this
 activity to be fully integrated with the NumPy community and  
 Scott and
 Jason want to interact with the community as much as feasible  
 as they
 suggest re-factoring changes (though they both have more  
 experience
 with phone-conversations to resolve concerns than email chains  
 and so
 some patience from everybody will be appreciated).

 Because Jason and Scott are new to this mailing list (but not  
 new to
 NumPy),  I wanted to introduce them so they would feel more
 comfortable posting questions and people would have some  
 context as to
 what they were trying to do.

 Scott and Jason are both very proficient and skilled  
 programmers and I
 have full confidence in their abilities.   That said, we very  
 much
 want the input of as many people as possible as we pursue the  
 goal of
 grouping together more tightly the Python C-API interface layer  
 to
 NumPy.

 I will be involved in some of the discussions, but am currently  
 on a
 different project which has tight schedules and so I will only  
 be able
 to provide limited mailing-list visibility.


 I think 2.0 would be a bit early for this. Is there any reason it
 couldn't be done in 2.1? What is the planned policy with regards  
 to the
 visible interface for extensions? It would also be nice to have  
 a rough idea
 of how the resulting code would be layered, i.e., what is the  
 design for
 this re-factoring. Simply having a design would be a major step  
 forward.

 The problem with doing it in 2.1 is that this re-factoring will  
 

Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Travis Oliphant


On May 26, 2010, at 5:31 AM, Pauli Virtanen wrote:


Wed, 26 May 2010 10:50:19 +0200, Sebastian Walter wrote:
I'm a potential user of the C-API and therefore I'm very interested  
in

the outcome.
In the previous discussion
(http://comments.gmane.org/gmane.comp.python.numeric.general/37409)  
many

different views on what the new C-API should be were expressed.


I believe the aim of the refactor is to *not* change the C-API at all,
but separate it internally from the routines that do the heavy  
lifting.
Externally, Numpy would still look the same, but be more easy to  
maintain.


The routines that do the heavy lifting could then be good for reuse  
and
be more easy to maintain, but I think how and where they would be  
exposed

hasn't been discussed so far...



This is correct.   In our plans, the current NumPy C-API would not  
change.


Clearly there will be another potential API that could be used by  
other systems, but exactly what this is should be discussed and  
decided upon over time.   I don't think our goals for the re-factoring  
depends on how this is done exactly.


-Travis




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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Travis Oliphant

On May 26, 2010, at 6:40 AM, Sebastian Walter wrote:

 On Wed, May 26, 2010 at 12:31 PM, Pauli Virtanen p...@iki.fi wrote:
 Wed, 26 May 2010 10:50:19 +0200, Sebastian Walter wrote:
 I'm a potential user of the C-API and therefore I'm very  
 interested in
 the outcome.
 In the previous discussion
 (http://comments.gmane.org/gmane.comp.python.numeric.general/ 
 37409) many
 different views on what the new C-API should be were expressed.

 I believe the aim of the refactor is to *not* change the C-API at  
 all,
 but separate it internally from the routines that do the heavy  
 lifting.
 Externally, Numpy would still look the same, but be more easy to  
 maintain.

 Sorry for the confusion. By C-API I meant a C-API that would be
 independent of the CPython API.


 The routines that do the heavy lifting could then be good for reuse  
 and
 be more easy to maintain, but I think how and where they would be  
 exposed
 hasn't been discussed so far...

 I had the impression that the goal is not only to have code that is
 easier to maintain but to give developers the possibility to use numpy
 functionality (broadcasting, ufuncs, ...) within C code without having
 to use CPython API (refcounts, construction of PyObjects etc.).

This is partially correct.   There may be a need to have some stub  
implementation of some aspects of the Python C-API (probably at least  
reference counting and exception handling for now).

We don't need to work all of this out initially.   I think getting the  
separation done in the next several weeks will spawn conversations and  
ideas that may take several months to work out the new C-level-only  
API.  That interface API is important in the short term, but  
also one that could change over the next several months.

-Travis

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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Matthew Brett
Hi,

 I think the main problem has been windows compatibility. Git is best from
 the command line whereas the windows command line is an afterthought.
 Another box that needs a check-mark is the buildbot. If svn clients are
 supported then it may be that neither of those are going to be a problem.
 However, It needs user testing.

For windows - I think honestly this is now not a serious barrier to
using git.  I've installed msysgit on 4 or 5 machines recently, and it
has been very smooth - as well as providing a nice bash shell.

I think it would be a huge reduction in the barrier to contributing to
numpy if we could change to git.

Cheers,

Matthew
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread josef . pktd
On Wed, May 26, 2010 at 7:44 PM, Matthew Brett matthew.br...@gmail.com wrote:
 Hi,

 I think the main problem has been windows compatibility. Git is best from
 the command line whereas the windows command line is an afterthought.
 Another box that needs a check-mark is the buildbot. If svn clients are
 supported then it may be that neither of those are going to be a problem.
 However, It needs user testing.

 For windows - I think honestly this is now not a serious barrier to
 using git.  I've installed msysgit on 4 or 5 machines recently, and it
 has been very smooth - as well as providing a nice bash shell.

there is no such thing as a nice bash shell for a windows user.
I have no idea how to use one.

Josef



 I think it would be a huge reduction in the barrier to contributing to
 numpy if we could change to git.

 Cheers,

 Matthew
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Matthew Brett
Hi,

 there is no such thing as a nice bash shell for a windows user.
 I have no idea how to use one.

It is a nice bash shell.   You may not want a nice bash shell ;)

I can't imagine you'd object to one though.  It's just a useful place
to type git commands, with file / directory path autocompletion, git
branch autocompletion and so on.

See you,

Matthew
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Charles R Harris
On Wed, May 26, 2010 at 7:25 PM, josef.p...@gmail.com wrote:

 On Wed, May 26, 2010 at 7:44 PM, Matthew Brett matthew.br...@gmail.com
 wrote:
  Hi,
 
  I think the main problem has been windows compatibility. Git is best
 from
  the command line whereas the windows command line is an afterthought.
  Another box that needs a check-mark is the buildbot. If svn clients are
  supported then it may be that neither of those are going to be a
 problem.
  However, It needs user testing.
 
  For windows - I think honestly this is now not a serious barrier to
  using git.  I've installed msysgit on 4 or 5 machines recently, and it
  has been very smooth - as well as providing a nice bash shell.

 there is no such thing as a nice bash shell for a windows user.
 I have no idea how to use one.


Heh. Can you to try the svn interface to github using your favorite svn ap.
I suppose we need to set up a test account there. Is it possible to have a
multiple user git account on github, or is it all push and merge?

Chuck
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Charles R Harris
On Wed, May 26, 2010 at 7:34 PM, Matthew Brett matthew.br...@gmail.comwrote:

 Hi,

  there is no such thing as a nice bash shell for a windows user.
  I have no idea how to use one.

 It is a nice bash shell.   You may not want a nice bash shell ;)

 I can't imagine you'd object to one though.  It's just a useful place
 to type git commands, with file / directory path autocompletion, git
 branch autocompletion and so on.


Any shell on windows is a pain, if only because of the spaces in the
filenames.

Chuck
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Benjamin Root
On Wed, May 26, 2010 at 8:37 PM, Charles R Harris charlesr.har...@gmail.com
 wrote:



 On Wed, May 26, 2010 at 7:34 PM, Matthew Brett matthew.br...@gmail.comwrote:

 Hi,

  there is no such thing as a nice bash shell for a windows user.
  I have no idea how to use one.

 It is a nice bash shell.   You may not want a nice bash shell ;)

 I can't imagine you'd object to one though.  It's just a useful place
 to type git commands, with file / directory path autocompletion, git
 branch autocompletion and so on.


 Any shell on windows is a pain, if only because of the spaces in the
 filenames.


Why?  Can't you just escape the spaces with backslashes... oh, nevermind...

Ben Root



 Chuck


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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread josef . pktd
On Wed, May 26, 2010 at 9:37 PM, Charles R Harris
charlesr.har...@gmail.com wrote:


 On Wed, May 26, 2010 at 7:34 PM, Matthew Brett matthew.br...@gmail.com
 wrote:

 Hi,

  there is no such thing as a nice bash shell for a windows user.
  I have no idea how to use one.

 It is a nice bash shell.   You may not want a nice bash shell ;)

 I can't imagine you'd object to one though.  It's just a useful place
 to type git commands, with file / directory path autocompletion, git
 branch autocompletion and so on.


 Any shell on windows is a pain, if only because of the spaces in the
 filenames.

When I'm using git, or bzr or svn I use the windows shell which I'm
very familiar with ,and allows standard copy-paste and has quotes.

But since, I think, there are no numpy developers on Windows, and I'm
the only one for scipy, and occasional commits I can do with anything,
I won't argue this time.

Josef



 Chuck


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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Matthew Brett
Hi,

 Any shell on windows is a pain, if only because of the spaces in the
 filenames.

 When I'm using git, or bzr or svn I use the windows shell which I'm
 very familiar with ,and allows standard copy-paste and has quotes.

 But since, I think, there are no numpy developers on Windows, and I'm
 the only one for scipy, and occasional commits I can do with anything,
 I won't argue this time.

I've been testing quite a bit on windows recently, and I used to use
windows all the time.  I've found msysgit to be pretty good.   I
personally have always hated the windows shell, but you can use
msysgit from the windows shell if you prefer...

If you're OK with bzr or svn from the windows command line, I am sure
git will pose no major problems.

See you,

Matthew
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Jarrod Millman
On Wed, May 26, 2010 at 6:35 PM, Charles R Harris
charlesr.har...@gmail.com wrote:
 Heh. Can you to try the svn interface to github using your favorite svn ap.
 I suppose we need to set up a test account there. Is it possible to have a
 multiple user git account on github, or is it all push and merge?

Yes, that is possible.  Currently it is not officially allowed
according to their terms of service, but they are planning to enable
that and have granted exceptions to their current policy in a few
instances (that I am familiar with).  But this is a detail that we can
easily address in a NEP, if there seems to be interest (which there
currently seems to be).  So for now just keep sending emails with
issues you want addressed in any actual proposal for this transition.

Let's move this discussion to the git thread and use the thread for
the discussion related directly to the subject line.

Thanks,

-- 
Jarrod Millman
Helen Wills Neuroscience Institute
10 Giannini Hall, UC Berkeley
http://cirl.berkeley.edu/
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-26 Thread Charles R Harris
On Wed, May 26, 2010 at 7:47 PM, Benjamin Root ben.r...@ou.edu wrote:



 On Wed, May 26, 2010 at 8:37 PM, Charles R Harris 
 charlesr.har...@gmail.com wrote:



 On Wed, May 26, 2010 at 7:34 PM, Matthew Brett 
 matthew.br...@gmail.comwrote:

 Hi,

  there is no such thing as a nice bash shell for a windows user.
  I have no idea how to use one.

 It is a nice bash shell.   You may not want a nice bash shell ;)

 I can't imagine you'd object to one though.  It's just a useful place
 to type git commands, with file / directory path autocompletion, git
 branch autocompletion and so on.


 Any shell on windows is a pain, if only because of the spaces in the
 filenames.


 Why?  Can't you just escape the spaces with backslashes... oh, nevermind...


Sure, no doubt the experience would cleanse my soul. But flagellation would
be less painful.

Chuck
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[Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Travis Oliphant

Hi everyone,

There has been some talk about re-factoring NumPy to separate out the  
Python C-API layer and make NumPy closer to a C-library.   I know  
there are a few different ideas about what this means, and also that  
people are very busy.  I also know there is a NumPy 2.0 release that  
is in the works.

I'm excited to let everyone know that we (at Enthought) have been able  
to find resources (about 3 man months) to work on this re-factoring  
project and Scott and Jason (both very experienced C and Python  
programmers) are actively pursuing it.My hope is that NumPy 2.0  
will contain this re-factoring (which should be finished just after  
SciPy 2010 --- where I'm going to organize a Sprint on NumPy which  
will include at least date-time improvements and re-factoring work).

While we have specific goals for the re-factoring, we want this  
activity to be fully integrated with the NumPy community and Scott and  
Jason want to interact with the community as much as feasible as they  
suggest re-factoring changes (though they both have more experience  
with phone-conversations to resolve concerns than email chains and so  
some patience from everybody will be appreciated).

Because Jason and Scott are new to this mailing list (but not new to  
NumPy),  I wanted to introduce them so they would feel more  
comfortable posting questions and people would have some context as to  
what they were trying to do.

Scott and Jason are both very proficient and skilled programmers and I  
have full confidence in their abilities.   That said, we very much  
want the input of as many people as possible as we pursue the goal of  
grouping together more tightly the Python C-API interface layer to  
NumPy.

I will be involved in some of the discussions, but am currently on a  
different project which has tight schedules and so I will only be able  
to provide limited mailing-list visibility.

Best regards,

-Travis



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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Charles R Harris
On Tue, May 25, 2010 at 1:37 PM, Travis Oliphant oliph...@enthought.comwrote:


 Hi everyone,

 There has been some talk about re-factoring NumPy to separate out the
 Python C-API layer and make NumPy closer to a C-library.   I know
 there are a few different ideas about what this means, and also that
 people are very busy.  I also know there is a NumPy 2.0 release that
 is in the works.

 I'm excited to let everyone know that we (at Enthought) have been able
 to find resources (about 3 man months) to work on this re-factoring
 project and Scott and Jason (both very experienced C and Python
 programmers) are actively pursuing it.My hope is that NumPy 2.0
 will contain this re-factoring (which should be finished just after
 SciPy 2010 --- where I'm going to organize a Sprint on NumPy which
 will include at least date-time improvements and re-factoring work).

 While we have specific goals for the re-factoring, we want this
 activity to be fully integrated with the NumPy community and Scott and
 Jason want to interact with the community as much as feasible as they
 suggest re-factoring changes (though they both have more experience
 with phone-conversations to resolve concerns than email chains and so
 some patience from everybody will be appreciated).

 Because Jason and Scott are new to this mailing list (but not new to
 NumPy),  I wanted to introduce them so they would feel more
 comfortable posting questions and people would have some context as to
 what they were trying to do.

 Scott and Jason are both very proficient and skilled programmers and I
 have full confidence in their abilities.   That said, we very much
 want the input of as many people as possible as we pursue the goal of
 grouping together more tightly the Python C-API interface layer to
 NumPy.

 I will be involved in some of the discussions, but am currently on a
 different project which has tight schedules and so I will only be able
 to provide limited mailing-list visibility.


I think 2.0 would be a bit early for this. Is there any reason it couldn't
be done in 2.1? What is the planned policy with regards to the visible
interface for extensions? It would also be nice to have a rough idea of how
the resulting code would be layered, i.e., what is the design for this
re-factoring. Simply having a design would be a major step forward.

In any case, I think the primary goal for 2.0 should remain the python3k
port.

Chuck
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Travis Oliphant


On May 25, 2010, at 2:50 PM, Charles R Harris wrote:




On Tue, May 25, 2010 at 1:37 PM, Travis Oliphant oliph...@enthought.com 
 wrote:


Hi everyone,

There has been some talk about re-factoring NumPy to separate out the
Python C-API layer and make NumPy closer to a C-library.   I know
there are a few different ideas about what this means, and also that
people are very busy.  I also know there is a NumPy 2.0 release that
is in the works.

I'm excited to let everyone know that we (at Enthought) have been able
to find resources (about 3 man months) to work on this re-factoring
project and Scott and Jason (both very experienced C and Python
programmers) are actively pursuing it.My hope is that NumPy 2.0
will contain this re-factoring (which should be finished just after
SciPy 2010 --- where I'm going to organize a Sprint on NumPy which
will include at least date-time improvements and re-factoring work).

While we have specific goals for the re-factoring, we want this
activity to be fully integrated with the NumPy community and Scott and
Jason want to interact with the community as much as feasible as they
suggest re-factoring changes (though they both have more experience
with phone-conversations to resolve concerns than email chains and so
some patience from everybody will be appreciated).

Because Jason and Scott are new to this mailing list (but not new to
NumPy),  I wanted to introduce them so they would feel more
comfortable posting questions and people would have some context as to
what they were trying to do.

Scott and Jason are both very proficient and skilled programmers and I
have full confidence in their abilities.   That said, we very much
want the input of as many people as possible as we pursue the goal of
grouping together more tightly the Python C-API interface layer to
NumPy.

I will be involved in some of the discussions, but am currently on a
different project which has tight schedules and so I will only be able
to provide limited mailing-list visibility.


I think 2.0 would be a bit early for this. Is there any reason it  
couldn't be done in 2.1? What is the planned policy with regards to  
the visible interface for extensions? It would also be nice to have  
a rough idea of how the resulting code would be layered, i.e., what  
is the design for this re-factoring. Simply having a design would be  
a major step forward.


The problem with doing it in 2.1 is that this re-factoring will  
require extensions to be re-built.   The visible interface to  
extensions will not change, but there will likely be ABI  
incompatibility.It seems prudent to do this in NumPy 2.0.
Perhaps we can also put in place the ABI-protecting indirection  
approaches that David C. was suggesting earlier.


Some aspects of the design are still being fleshed out, but the basic  
idea is to separate out a core library that is as independent of the  
Python C-API as possible.There will likely be at least some  
dependency on the Python C-API (reference counting and error handling  
and possibly others) which any interface would have to provide in a  
very simple Python.h -- equivalent, for example.


Our purpose is to allow NumPy to be integrated with other languages or  
other frameworks systems without explicitly relying on CPython. 
There are a lot of questions as to how this will work, and so much of  
that is being worked out.   Part of the reason for this mail is to  
help ensure that as much of this discussion as possible takes place in  
public.


-Travis




In any case, I think the primary goal for 2.0 should remain the  
python3k port.


Chuck

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Enthought Inc.
1-512-536-1057
http://www.enthought.com
oliph...@enthought.com





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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Charles R Harris
On Tue, May 25, 2010 at 2:54 PM, Travis Oliphant oliph...@enthought.comwrote:


 On May 25, 2010, at 2:50 PM, Charles R Harris wrote:



 On Tue, May 25, 2010 at 1:37 PM, Travis Oliphant 
 oliph...@enthought.comwrote:


 Hi everyone,

 There has been some talk about re-factoring NumPy to separate out the
 Python C-API layer and make NumPy closer to a C-library.   I know
 there are a few different ideas about what this means, and also that
 people are very busy.  I also know there is a NumPy 2.0 release that
 is in the works.

 I'm excited to let everyone know that we (at Enthought) have been able
 to find resources (about 3 man months) to work on this re-factoring
 project and Scott and Jason (both very experienced C and Python
 programmers) are actively pursuing it.My hope is that NumPy 2.0
 will contain this re-factoring (which should be finished just after
 SciPy 2010 --- where I'm going to organize a Sprint on NumPy which
 will include at least date-time improvements and re-factoring work).

 While we have specific goals for the re-factoring, we want this
 activity to be fully integrated with the NumPy community and Scott and
 Jason want to interact with the community as much as feasible as they
 suggest re-factoring changes (though they both have more experience
 with phone-conversations to resolve concerns than email chains and so
 some patience from everybody will be appreciated).

 Because Jason and Scott are new to this mailing list (but not new to
 NumPy),  I wanted to introduce them so they would feel more
 comfortable posting questions and people would have some context as to
 what they were trying to do.

 Scott and Jason are both very proficient and skilled programmers and I
 have full confidence in their abilities.   That said, we very much
 want the input of as many people as possible as we pursue the goal of
 grouping together more tightly the Python C-API interface layer to
 NumPy.

 I will be involved in some of the discussions, but am currently on a
 different project which has tight schedules and so I will only be able
 to provide limited mailing-list visibility.


 I think 2.0 would be a bit early for this. Is there any reason it couldn't
 be done in 2.1? What is the planned policy with regards to the visible
 interface for extensions? It would also be nice to have a rough idea of how
 the resulting code would be layered, i.e., what is the design for this
 re-factoring. Simply having a design would be a major step forward.


 The problem with doing it in 2.1 is that this re-factoring will require
 extensions to be re-built.   The visible interface to extensions will not
 change, but there will likely be ABI incompatibility.It seems prudent to
 do this in NumPy 2.0.   Perhaps we can also put in place the ABI-protecting
 indirection approaches that David C. was suggesting earlier.

 Some aspects of the design are still being fleshed out, but the basic idea
 is to separate out a core library that is as independent of the Python C-API
 as possible.There will likely be at least some dependency on the Python
 C-API (reference counting and error handling and possibly others) which any
 interface would have to provide in a very simple Python.h -- equivalent, for
 example.

 Our purpose is to allow NumPy to be integrated with other languages or
 other frameworks systems without explicitly relying on CPython.There are
 a lot of questions as to how this will work, and so much of that is being
 worked out.   Part of the reason for this mail is to help ensure that as
 much of this discussion as possible takes place in public.


Sounds good, but what if it doesn't get finished in a few months? I think we
should get 2.0.0 out pronto, ideally it would already have been released. I
think a major refactoring like this proposal should get the 3.0.0 label.
Admittedly that makes keeping a refactored branch current with fixes going
into the trunk a hassle, but perhaps that can be worked around somewhat by
clearly labeling what files will be touched in the refactoring and possibly
rearranging the content of the existing files. This requires a game plan and
a clear idea of the goal. Put simply, I think the proposed schedule is too
ambitious and needs to be fleshed out.  This refactoring isn't going to be
as straight forward as the python3k port because a lot of design decisions
need to be made along the way.

Chuck
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread David Goldsmith
Travis: do you already have a place on the NumPy Development
Wikihttp://wiki.numpy.org/where you're (b)logging your design
decisions?  Seems like a good way for
concerned parties to monitor your choices in more or less real time and thus
provide comment in a timely fashion.

DG

On Tue, May 25, 2010 at 2:19 PM, Charles R Harris charlesr.har...@gmail.com
 wrote:



 On Tue, May 25, 2010 at 2:54 PM, Travis Oliphant 
 oliph...@enthought.comwrote:


 On May 25, 2010, at 2:50 PM, Charles R Harris wrote:



 On Tue, May 25, 2010 at 1:37 PM, Travis Oliphant 
 oliph...@enthought.comwrote:


 Hi everyone,

 There has been some talk about re-factoring NumPy to separate out the
 Python C-API layer and make NumPy closer to a C-library.   I know
 there are a few different ideas about what this means, and also that
 people are very busy.  I also know there is a NumPy 2.0 release that
 is in the works.

 I'm excited to let everyone know that we (at Enthought) have been able
 to find resources (about 3 man months) to work on this re-factoring
 project and Scott and Jason (both very experienced C and Python
 programmers) are actively pursuing it.My hope is that NumPy 2.0
 will contain this re-factoring (which should be finished just after
 SciPy 2010 --- where I'm going to organize a Sprint on NumPy which
 will include at least date-time improvements and re-factoring work).

 While we have specific goals for the re-factoring, we want this
 activity to be fully integrated with the NumPy community and Scott and
 Jason want to interact with the community as much as feasible as they
 suggest re-factoring changes (though they both have more experience
 with phone-conversations to resolve concerns than email chains and so
 some patience from everybody will be appreciated).

 Because Jason and Scott are new to this mailing list (but not new to
 NumPy),  I wanted to introduce them so they would feel more
 comfortable posting questions and people would have some context as to
 what they were trying to do.

 Scott and Jason are both very proficient and skilled programmers and I
 have full confidence in their abilities.   That said, we very much
 want the input of as many people as possible as we pursue the goal of
 grouping together more tightly the Python C-API interface layer to
 NumPy.

 I will be involved in some of the discussions, but am currently on a
 different project which has tight schedules and so I will only be able
 to provide limited mailing-list visibility.


 I think 2.0 would be a bit early for this. Is there any reason it couldn't
 be done in 2.1? What is the planned policy with regards to the visible
 interface for extensions? It would also be nice to have a rough idea of how
 the resulting code would be layered, i.e., what is the design for this
 re-factoring. Simply having a design would be a major step forward.


 The problem with doing it in 2.1 is that this re-factoring will require
 extensions to be re-built.   The visible interface to extensions will not
 change, but there will likely be ABI incompatibility.It seems prudent to
 do this in NumPy 2.0.   Perhaps we can also put in place the ABI-protecting
 indirection approaches that David C. was suggesting earlier.

 Some aspects of the design are still being fleshed out, but the basic idea
 is to separate out a core library that is as independent of the Python C-API
 as possible.There will likely be at least some dependency on the Python
 C-API (reference counting and error handling and possibly others) which any
 interface would have to provide in a very simple Python.h -- equivalent, for
 example.

 Our purpose is to allow NumPy to be integrated with other languages or
 other frameworks systems without explicitly relying on CPython.There are
 a lot of questions as to how this will work, and so much of that is being
 worked out.   Part of the reason for this mail is to help ensure that as
 much of this discussion as possible takes place in public.


 Sounds good, but what if it doesn't get finished in a few months? I think
 we should get 2.0.0 out pronto, ideally it would already have been released.
 I think a major refactoring like this proposal should get the 3.0.0 label.
 Admittedly that makes keeping a refactored branch current with fixes going
 into the trunk a hassle, but perhaps that can be worked around somewhat by
 clearly labeling what files will be touched in the refactoring and possibly
 rearranging the content of the existing files. This requires a game plan and
 a clear idea of the goal. Put simply, I think the proposed schedule is too
 ambitious and needs to be fleshed out.  This refactoring isn't going to be
 as straight forward as the python3k port because a lot of design decisions
 need to be made along the way.

 Chuck

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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread David Cournapeau
On Wed, May 26, 2010 at 4:37 AM, Travis Oliphant oliph...@enthought.com wrote:

 Hi everyone,

 There has been some talk about re-factoring NumPy to separate out the
 Python C-API layer and make NumPy closer to a C-library.   I know
 there are a few different ideas about what this means, and also that
 people are very busy.  I also know there is a NumPy 2.0 release that
 is in the works.

 I'm excited to let everyone know that we (at Enthought) have been able
 to find resources (about 3 man months) to work on this re-factoring
 project and Scott and Jason (both very experienced C and Python
 programmers) are actively pursuing it.    My hope is that NumPy 2.0
 will contain this re-factoring (which should be finished just after
 SciPy 2010 --- where I'm going to organize a Sprint on NumPy which
 will include at least date-time improvements and re-factoring work).

This sounds great. As for how this is to be done, what would be the
numpy aspects to be worked on first ? The obvious candidates are
broadcasting, indexing, and ufunc ?

Concerning the goal of making numpy available to other languages, is
the strategy already decided ? For example, will the core C API be
reference-counted though python, or will this be abstracted ? It may
be not feasable in the timeframe that Enthought has in mind, but I
have been wondering for some time if we could do something like LUA
does. LUA has a stronger story than python in terms of embedding
within other languages, and the stack may be one solution for
abstracting the reference counting (only the API around the stack and
its implementation would need to be aware of a particular
implementation of memory management).

David

 While we have specific goals for the re-factoring, we want this
 activity to be fully integrated with the NumPy community and Scott and
 Jason want to interact with the community as much as feasible as they
 suggest re-factoring changes (though they both have more experience
 with phone-conversations to resolve concerns than email chains and so
 some patience from everybody will be appreciated).

 Because Jason and Scott are new to this mailing list (but not new to
 NumPy),  I wanted to introduce them so they would feel more
 comfortable posting questions and people would have some context as to
 what they were trying to do.

 Scott and Jason are both very proficient and skilled programmers and I
 have full confidence in their abilities.   That said, we very much
 want the input of as many people as possible as we pursue the goal of
 grouping together more tightly the Python C-API interface layer to
 NumPy.

 I will be involved in some of the discussions, but am currently on a
 different project which has tight schedules and so I will only be able
 to provide limited mailing-list visibility.

 Best regards,

 -Travis



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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Charles R Harris
On Tue, May 25, 2010 at 4:06 PM, David Cournapeau courn...@gmail.comwrote:

 On Wed, May 26, 2010 at 6:19 AM, Charles R Harris
 charlesr.har...@gmail.com wrote:

  Sounds good, but what if it doesn't get finished in a few months? I think
 we
  should get 2.0.0 out pronto, ideally it would already have been released.
 I
  think a major refactoring like this proposal should get the 3.0.0 label.

 Naming it 3.0 or 2.1 does not matter much - I think we should avoid
 breaking things twice. I can see a few solutions:
  - postpone 2.0 indefinitely, until this new work is done
  - backport py3k changes to 1.5 (which would be API and ABI
 compatible with 1.4.1), and 2.0 would contain all the breaking
 changes.


If I had to choose between those, I would pick making a 1.5 release, that
is, branch the current trunk and then excise datetime and all the related
changes. Let me propose a schedule:


   - Branch 1.5 in late June. The time until then to be spent closing
   tickets.


   - Release 1.5 towards the end of July. That should be doable now that the
   release folks have had some practice.


   - Release 2.0 next spring. I don't think 3 man months is enough time to
   redesign/refactor numpy, get it tested, and document the changes. If we hide
   stuff away it will be even longer before folks who have written extensions
   can make the needed changes.

Chuck
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Joe Harrington
On Tue, 25 May 2010 15:54:26 -0500, Travis Oliphant oliph...@enthought.com 
wrote: 

On May 25, 2010, at 2:50 PM, Charles R Harris wrote:



 On Tue, May 25, 2010 at 1:37 PM, Travis Oliphant oliph...@enthought.com 
  wrote:

 Hi everyone,

 There has been some talk about re-factoring NumPy to separate out the
 Python C-API layer and make NumPy closer to a C-library.   I know
 there are a few different ideas about what this means, and also that
 people are very busy.  I also know there is a NumPy 2.0 release that
 is in the works.

 I'm excited to let everyone know that we (at Enthought) have been able
 to find resources (about 3 man months) to work on this re-factoring
 project and Scott and Jason (both very experienced C and Python
 programmers) are actively pursuing it.My hope is that NumPy 2.0
 will contain this re-factoring (which should be finished just after
 SciPy 2010 --- where I'm going to organize a Sprint on NumPy which
 will include at least date-time improvements and re-factoring work).

 While we have specific goals for the re-factoring, we want this
 activity to be fully integrated with the NumPy community and Scott and
 Jason want to interact with the community as much as feasible as they
 suggest re-factoring changes (though they both have more experience
 with phone-conversations to resolve concerns than email chains and so
 some patience from everybody will be appreciated).

 Because Jason and Scott are new to this mailing list (but not new to
 NumPy),  I wanted to introduce them so they would feel more
 comfortable posting questions and people would have some context as to
 what they were trying to do.

 Scott and Jason are both very proficient and skilled programmers and I
 have full confidence in their abilities.   That said, we very much
 want the input of as many people as possible as we pursue the goal of
 grouping together more tightly the Python C-API interface layer to
 NumPy.

 I will be involved in some of the discussions, but am currently on a
 different project which has tight schedules and so I will only be able
 to provide limited mailing-list visibility.


 I think 2.0 would be a bit early for this. Is there any reason it  
 couldn't be done in 2.1? What is the planned policy with regards to  
 the visible interface for extensions? It would also be nice to have  
 a rough idea of how the resulting code would be layered, i.e., what  
 is the design for this re-factoring. Simply having a design would be  
 a major step forward.

The problem with doing it in 2.1 is that this re-factoring will  
require extensions to be re-built.   The visible interface to  
extensions will not change, but there will likely be ABI  
incompatibility.It seems prudent to do this in NumPy 2.0.
Perhaps we can also put in place the ABI-protecting indirection  
approaches that David C. was suggesting earlier.

Some aspects of the design are still being fleshed out, but the basic  
idea is to separate out a core library that is as independent of the  
Python C-API as possible.There will likely be at least some  
dependency on the Python C-API (reference counting and error handling  
and possibly others) which any interface would have to provide in a  
very simple Python.h -- equivalent, for example.

Our purpose is to allow NumPy to be integrated with other languages or  
other frameworks systems without explicitly relying on CPython. 
There are a lot of questions as to how this will work, and so much of  
that is being worked out.   Part of the reason for this mail is to  
help ensure that as much of this discussion as possible takes place in  
public.

-Travis



 In any case, I think the primary goal for 2.0 should remain the  
 python3k port.

 Chuck

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--
Travis Oliphant
Enthought Inc.
1-512-536-1057
http://www.enthought.com
oliph...@enthought.com


Chuck wants to make 2.0 be the py3k release.  I expressed a desire
some time ago to hold 2.0 until we had reviewed docs, on the basis
that this should have been done for 1.0, and 2.0 is our real 1.0 for
this and other reasons.  Now Travis wants to refactor the C code in a
way that breaks extensions (another real 1.0 item).  But Chuck wants
to get his project out the door soon, and not without justification.

NumPy is not a small project anymore and it would make sense not only
to have an open community process (which we sort-of do, except when we
don't), but to define that process and to conduct more of it in plain
view, on the web site, rather than hiding it here in the list archives
where only subscribers are likely to see it.  There are many
interested parties (users) who are not on the lists.  It's fine (even
good) not to commit to specific dates until we know them for sure, but
the process and rough timeline should be laid out publicly.

I hope we can agree on one 

Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Charles R Harris
On Tue, May 25, 2010 at 4:31 PM, David Cournapeau courn...@gmail.comwrote:

 On Wed, May 26, 2010 at 4:37 AM, Travis Oliphant oliph...@enthought.com
 wrote:
 
  Hi everyone,
 
  There has been some talk about re-factoring NumPy to separate out the
  Python C-API layer and make NumPy closer to a C-library.   I know
  there are a few different ideas about what this means, and also that
  people are very busy.  I also know there is a NumPy 2.0 release that
  is in the works.
 
  I'm excited to let everyone know that we (at Enthought) have been able
  to find resources (about 3 man months) to work on this re-factoring
  project and Scott and Jason (both very experienced C and Python
  programmers) are actively pursuing it.My hope is that NumPy 2.0
  will contain this re-factoring (which should be finished just after
  SciPy 2010 --- where I'm going to organize a Sprint on NumPy which
  will include at least date-time improvements and re-factoring work).

 This sounds great. As for how this is to be done, what would be the
 numpy aspects to be worked on first ? The obvious candidates are
 broadcasting, indexing, and ufunc ?


If it was ufuncs alone it could be broken out into a separate project where
ufuncs operated on objects that exposed the buffer interface. This would
keep it separate from from numpy and at some point we could drop it into
numpy trunk. If things went that way it would also make sense to drop
support for versions of python that don't support the new buffer protocol.
Speaking of which, can the datetime types be supported with the buffer
interface? If not, there is some design work to be done there as to how to
use the buffer interface for new types.

snip

Chuck
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Stéfan van der Walt
On 25 May 2010 15:06, David Cournapeau courn...@gmail.com wrote:
 Naming it 3.0 or 2.1 does not matter much - I think we should avoid
 breaking things twice. I can see a few solutions:
  - postpone 2.0 indefinitely, until this new work is done
  - backport py3k changes to 1.5 (which would be API and ABI
 compatible with 1.4.1), and 2.0 would contain all the breaking
 changes.

This is a good suggestion.  Release 1.5 without ABI breakage and then
leave enough time to discuss an optimal API, refactor the C code and
include datetime functionality for 2.0.  We don't stand anything to
gain by rushing.

If I'm not mistaken, David did warn that this kind of situation may
occur the last time around :)

Cheers
Stéfan
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Charles R Harris
2010/5/25 Stéfan van der Walt ste...@sun.ac.za

 On 25 May 2010 15:06, David Cournapeau courn...@gmail.com wrote:
  Naming it 3.0 or 2.1 does not matter much - I think we should avoid
  breaking things twice. I can see a few solutions:
   - postpone 2.0 indefinitely, until this new work is done
   - backport py3k changes to 1.5 (which would be API and ABI
  compatible with 1.4.1), and 2.0 would contain all the breaking
  changes.

 This is a good suggestion.  Release 1.5 without ABI breakage and then
 leave enough time to discuss an optimal API, refactor the C code and
 include datetime functionality for 2.0.  We don't stand anything to
 gain by rushing.

 If I'm not mistaken, David did warn that this kind of situation may
 occur the last time around :)


IIRC, David was seeing a refactor a year or two off, if ever. I'm concerned
that the refactor will go on and on and on, not least because I haven't seen
any plan or discussion as to what the precise goals of the refactor are,
much less a plan for how to get there. It's hard to have a sprint when no
one knows what they are trying to achieve.

Chuck
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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Travis Oliphant
 
 I think 2.0 would be a bit early for this. Is there any reason it couldn't 
 be done in 2.1? What is the planned policy with regards to the visible 
 interface for extensions? It would also be nice to have a rough idea of how 
 the resulting code would be layered, i.e., what is the design for this 
 re-factoring. Simply having a design would be a major step forward.
 
 The problem with doing it in 2.1 is that this re-factoring will require 
 extensions to be re-built.   The visible interface to extensions will not 
 change, but there will likely be ABI incompatibility.It seems prudent to 
 do this in NumPy 2.0.   Perhaps we can also put in place the ABI-protecting 
 indirection approaches that David C. was suggesting earlier.  
 
 Some aspects of the design are still being fleshed out, but the basic idea is 
 to separate out a core library that is as independent of the Python C-API as 
 possible.There will likely be at least some dependency on the Python 
 C-API (reference counting and error handling and possibly others) which any 
 interface would have to provide in a very simple Python.h -- equivalent, for 
 example.  
 
 Our purpose is to allow NumPy to be integrated with other languages or other 
 frameworks systems without explicitly relying on CPython.There are a lot 
 of questions as to how this will work, and so much of that is being worked 
 out.   Part of the reason for this mail is to help ensure that as much of 
 this discussion as possible takes place in public.  
 
 
 Sounds good, but what if it doesn't get finished in a few months? I think we 
 should get 2.0.0 out pronto, ideally it would already have been released. I 
 think a major refactoring like this proposal should get the 3.0.0 label. 
 Admittedly that makes keeping a refactored branch current with fixes going 
 into the trunk a hassle, but perhaps that can be worked around somewhat by 
 clearly labeling what files will be touched in the refactoring and possibly 
 rearranging the content of the existing files. This requires a game plan and 
 a clear idea of the goal. Put simply, I think the proposed schedule is too 
 ambitious and needs to be fleshed out.  This refactoring isn't going to be as 
 straight forward as the python3k port because a lot of design decisions need 
 to be made along the way.

You are correct that there is not much time.However,  our timeline is 
middle of July and we do have dedicated resources.  I was also hoping to have 
discussions at SciPy to accelerate the process.   

-Travis

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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Travis Oliphant

On May 25, 2010, at 4:49 PM, David Goldsmith wrote:

 Travis: do you already have a place on the NumPy Development Wiki where 
 you're (b)logging your design decisions?  Seems like a good way for concerned 
 parties to monitor your choices in more or less real time and thus provide 
 comment in a timely fashion.

This is a great idea of course and we will definitely post progess there.   So 
far, the code has been reviewed and several functions identified for 
re-factoring.   This is taking place in a github branch of numpy called numpy 
refactor. 

-Travis

 
 DG
 
 On Tue, May 25, 2010 at 2:19 PM, Charles R Harris charlesr.har...@gmail.com 
 wrote:
 
 
 On Tue, May 25, 2010 at 2:54 PM, Travis Oliphant oliph...@enthought.com 
 wrote:
 
 On May 25, 2010, at 2:50 PM, Charles R Harris wrote:
 
 
 
 On Tue, May 25, 2010 at 1:37 PM, Travis Oliphant oliph...@enthought.com 
 wrote:
 
 Hi everyone,
 
 There has been some talk about re-factoring NumPy to separate out the
 Python C-API layer and make NumPy closer to a C-library.   I know
 there are a few different ideas about what this means, and also that
 people are very busy.  I also know there is a NumPy 2.0 release that
 is in the works.
 
 I'm excited to let everyone know that we (at Enthought) have been able
 to find resources (about 3 man months) to work on this re-factoring
 project and Scott and Jason (both very experienced C and Python
 programmers) are actively pursuing it.My hope is that NumPy 2.0
 will contain this re-factoring (which should be finished just after
 SciPy 2010 --- where I'm going to organize a Sprint on NumPy which
 will include at least date-time improvements and re-factoring work).
 
 While we have specific goals for the re-factoring, we want this
 activity to be fully integrated with the NumPy community and Scott and
 Jason want to interact with the community as much as feasible as they
 suggest re-factoring changes (though they both have more experience
 with phone-conversations to resolve concerns than email chains and so
 some patience from everybody will be appreciated).
 
 Because Jason and Scott are new to this mailing list (but not new to
 NumPy),  I wanted to introduce them so they would feel more
 comfortable posting questions and people would have some context as to
 what they were trying to do.
 
 Scott and Jason are both very proficient and skilled programmers and I
 have full confidence in their abilities.   That said, we very much
 want the input of as many people as possible as we pursue the goal of
 grouping together more tightly the Python C-API interface layer to
 NumPy.
 
 I will be involved in some of the discussions, but am currently on a
 different project which has tight schedules and so I will only be able
 to provide limited mailing-list visibility.
 
 
 I think 2.0 would be a bit early for this. Is there any reason it couldn't 
 be done in 2.1? What is the planned policy with regards to the visible 
 interface for extensions? It would also be nice to have a rough idea of how 
 the resulting code would be layered, i.e., what is the design for this 
 re-factoring. Simply having a design would be a major step forward.
 
 The problem with doing it in 2.1 is that this re-factoring will require 
 extensions to be re-built.   The visible interface to extensions will not 
 change, but there will likely be ABI incompatibility.It seems prudent to 
 do this in NumPy 2.0.   Perhaps we can also put in place the ABI-protecting 
 indirection approaches that David C. was suggesting earlier.  
 
 Some aspects of the design are still being fleshed out, but the basic idea is 
 to separate out a core library that is as independent of the Python C-API as 
 possible.There will likely be at least some dependency on the Python 
 C-API (reference counting and error handling and possibly others) which any 
 interface would have to provide in a very simple Python.h -- equivalent, for 
 example.  
 
 Our purpose is to allow NumPy to be integrated with other languages or other 
 frameworks systems without explicitly relying on CPython.There are a lot 
 of questions as to how this will work, and so much of that is being worked 
 out.   Part of the reason for this mail is to help ensure that as much of 
 this discussion as possible takes place in public.  
 
 
 Sounds good, but what if it doesn't get finished in a few months? I think we 
 should get 2.0.0 out pronto, ideally it would already have been released. I 
 think a major refactoring like this proposal should get the 3.0.0 label. 
 Admittedly that makes keeping a refactored branch current with fixes going 
 into the trunk a hassle, but perhaps that can be worked around somewhat by 
 clearly labeling what files will be touched in the refactoring and possibly 
 rearranging the content of the existing files. This requires a game plan and 
 a clear idea of the goal. Put simply, I think the proposed schedule is too 
 ambitious and needs to be fleshed out.  This 

Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Travis Oliphant

On May 25, 2010, at 5:06 PM, David Cournapeau wrote:

 On Wed, May 26, 2010 at 6:19 AM, Charles R Harris
 charlesr.har...@gmail.com wrote:
 
 Sounds good, but what if it doesn't get finished in a few months? I think we
 should get 2.0.0 out pronto, ideally it would already have been released. I
 think a major refactoring like this proposal should get the 3.0.0 label.
 
 Naming it 3.0 or 2.1 does not matter much - I think we should avoid
 breaking things twice. I can see a few solutions:
  - postpone 2.0 indefinitely, until this new work is done
  - backport py3k changes to 1.5 (which would be API and ABI
 compatible with 1.4.1), and 2.0 would contain all the breaking
 changes.

This is an interesting idea and also workable.  

 
 I am really worried about breaking things once now and once in a few
 months (or even a year).

I am too.  That's why this discussion.We will have the NumPy refactor done 
by end of July at the latest.   Numpy 2.0 should be able to come out in August. 
 

-Travis



 
 David
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Enthought, Inc.
oliph...@enthought.com
1-512-536-1057
http://www.enthought.com



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Re: [Numpy-discussion] Introduction to Scott, Jason, and (possibly) others from Enthought

2010-05-25 Thread Stéfan van der Walt
On 25 May 2010 21:22, Travis Oliphant oliph...@enthought.com wrote:
 This is a great idea of course and we will definitely post progess there.
 So far, the code has been reviewed and several functions identified for
 re-factoring.   This is taking place in a github branch of numpy called
 numpy refactor.

Awesome! Since github now supports SVN interaction, and all the core
devs use Git, now might be a good time to move the entire numpy source
tree?  It will certainly make it easier to merge the refactor changes!

Regards
Stéfan
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