[sage-devel] Re: Uganda teaching feedback
it's indeed a web host which provide free service to store your data online or share it online. the link is an open share link, it should be no problem as I can see it without login, maybe it's just like that I can't access google normally. Or maybe, I can send the file by email, may I have your email? 在 2015年7月26日星期日 UTC+8下午3:04:40，Dominique Laurain写道： Hi rt, no web page at your URL ( http://pan.baidu.com/s/1o6qYzgA http://www.google.com/url?q=http%3A%2F%2Fpan.baidu.com%2Fs%2F1o6qYzgAsa=Dsntz=1usg=AFQjCNEzOFJZVCSBSliodqrPhpESIMNi4Q ): http://pan.baidu.com/error/404.html from the main page (http://pan.baidu.com/) : I guess it is a web host ... you have to log in to access your website/blog/data.. Dominique. -- You received this message because you are subscribed to the Google Groups sage-devel group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/d/optout.
[sage-devel] Re: Uganda teaching feedback
the grub.svgz is the illustration of the boot process, it may be a little hard to read... and the configurations are uploaded to somewhere else, here is the link: http://pan.baidu.com/s/1o6qYzgA 在 2015年7月25日星期六 UTC+8下午8:07:10，rt.写道： my USB flash was divided into two partitions, the first one serves as a normal partition for file saving and the second one is only for booting purpose, all the livecd are saved in the second partition managed by grub2, the configuration files are placed in the attachment, to have it bootable in both legacy bios mode and uefi mode, you will have to install grub2 in two ways for targets, one is the i386( called like this in grub2),another is x86_64-efi, I install it with the following commands: grub-install --removable --recheck --target=x86_64-efi --efi-directory=/run/media/root/r\t --boot-directory=/run/media/root/r\t/boot/grub/x86_64-efi grub-install --recheck --removable --target=i386-pc --boot-directory=/run/media/root/r\t/boot/grub/i386-pc /dev/sdb before the two commands, you should already have the target partition mounted on the right place( here is /run/media/root/r\t/ ), the i386-pc targets need write data to mbr, while the x86_64-efi boot from efi excutable file which is loaded directly by bios with uefi support, that's a feature of uefi. As for 'secure boot', it's so called but it prohibit any loader unsigned or signed with a wrong key( more often the key belongs to Microsoft, but for some machine you can also install your own key), about how to boot with secure boot on, here is some more detailed refrence: www.rodsbooks.com/efi-bootloaders/index.html an announcement about 'secure boot' by fsf two or three years ago: http://www.fsf.org/campaigns/secure-boot-vs-restricted-boot/statement the two targets share nearly the same configurations which are located in /boot/grub/grub2_share/cfg, some file were removed to shrink the file size, so it's not ready to boot, but the arrangement of the file can be referenced. the main file for sagemath is placed in the same path as they are arranged in the live img, here in my USB flash, it's the directory '/live', the corresponding configuration is in 0_gnu_linux.cfg. among the files, /boot/grub/grub2_share/cfg/*.cfg and /boot/grub/$target/grub/grub.cfg is what you can refer, the other files were left just in case that you need. 在 2015年7月25日星期六 UTC+8下午7:50:01，rt.写道： e.. not really, I'm just a junior student now and interested in computer techniques. sorry to reply so late, we are having a field work and these days it seems that the ipv6 was not available or not stable enough, I was blocked and can't have access to google, so is this forum. Just now, I tried several times and finally I am lucky to send this message! grub2 is of course a free software, it's also made by GNU project as an update to legacy grub! As for my grub2 configuration, it seems that it will take some space to write it. I will try to conclude it here. Besides, you can find more instruction about it in the official manual. there is a great chance that you will have to fsck your usb flash disk, at leastfor sage live 6.5 or earlier 6.4, but that's easy to deal with and still acceptable. for the new version 6.7, I'm not sure as my laptop is now more convinient, so I haven't got to try the new version now. It should be claimed that not only sagemath, but also many live cd would couase the problem, and sagemath have tried to deal with this issue through several more convenient methods, though it's not auto done now. it is little long to say about the boot mode uefi and legacy bios, it's better that you find the explanation somewhere else, two place I recommend is the uefi official webset and tiannocore, as I first learned it from all kinds of forum, most of which were wrote in Chinese ... as for matlab, I just leared little, and it was already one year ago. as now I don't want to spend much time on it, I can't tell much about it, sorry. However, for matlab, there is a big problem, it's not free, not only the charge but also not open source; also, it takes lots of disk space( my hard disk is just a little inadequate to save all my files). Several weeks ago, I tried ansys under the linux, finaly got defeated and will never want to have ansys installed on linux again, there is so many troubles with it, and hardly have documents, I'm afraid that matlab would have the same circumstance, but that's just the third reason. Now sagemath is just powerful enough and script is so convenient to use. With additional tools, like a frontend( for example texmacs, with witch the formula displayed is easy to read ), it can meet nearly all what I need, there is no reason for me to try matlab again. maybe later I will try to add a map to illustrate how the grub2 works for my USB
[sage-devel] Re: Uganda teaching feedback
e.. not really, I'm just a junior student now and interested in computer techniques. sorry to reply so late, we are having a field work and these days it seems that the ipv6 was not available or not stable enough, I was blocked and can't have access to google, so is this forum. Just now, I tried several times and finally I am lucky to send this message! grub2 is of course a free software, it's also made by GNU project as an update to legacy grub! As for my grub2 configuration, it seems that it will take some space to write it. I will try to conclude it here. Besides, you can find more instruction about it in the official manual. there is a great chance that you will have to fsck your usb flash disk, at leastfor sage live 6.5 or earlier 6.4, but that's easy to deal with and still acceptable. for the new version 6.7, I'm not sure as my laptop is now more convinient, so I haven't got to try the new version now. It should be claimed that not only sagemath, but also many live cd would couase the problem, and sagemath have tried to deal with this issue through several more convenient methods, though it's not auto done now. it is little long to say about the boot mode uefi and legacy bios, it's better that you find the explanation somewhere else, two place I recommend is the uefi official webset and tiannocore, as I first learned it from all kinds of forum, most of which were wrote in Chinese ... as for matlab, I just leared little, and it was already one year ago. as now I don't want to spend much time on it, I can't tell much about it, sorry. However, for matlab, there is a big problem, it's not free, not only the charge but also not open source; also, it takes lots of disk space( my hard disk is just a little inadequate to save all my files). Several weeks ago, I tried ansys under the linux, finaly got defeated and will never want to have ansys installed on linux again, there is so many troubles with it, and hardly have documents, I'm afraid that matlab would have the same circumstance, but that's just the third reason. Now sagemath is just powerful enough and script is so convenient to use. With additional tools, like a frontend( for example texmacs, with witch the formula displayed is easy to read ), it can meet nearly all what I need, there is no reason for me to try matlab again. 在 2015年7月22日星期三 UTC+8上午3:35:08，Dominique Laurain写道： Hi rt, you are advanced student, aren't you ? ... :-) yes, it will be good to share about grub2 like Thierry did/does for his technical data...either in your own blog or you post it for some interested sage users or dev. I know only grub at my job, but maybe grub2 is more up to date. I guess many details are very important : how did you partition disk to handle the boot process from the grub to the chosen ISO file ? is grub2 free (no money to pay to install it) ? ... I don't know just now, what it means uefi or secure boot is off ... you can write short explanation (or reference websites) about what you did (no need to mention what you have not tried yourself). MATLAB can have advantages too : if you have the chance (for example usage free with school) to use MATLAB, do it...you will understand you didn't miss opportunity later,... you can compare and explain better your ideas why SAGE is very good. Keep written notes about good or bad experiences. Dominique. -- You received this message because you are subscribed to the Google Groups sage-devel group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/d/optout.
[sage-devel] Re: Uganda teaching feedback
my USB flash was divided into two partitions, the first one serves as a normal partition for file saving and the second one is only for booting purpose, all the livecd are saved in the second partition managed by grub2, the configuration files are placed in the attachment, to have it bootable in both legacy bios mode and uefi mode, you will have to install grub2 in two ways for targets, one is the i386( called like this in grub2),another is x86_64-efi, I install it with the following commands: grub-install --removable --recheck --target=x86_64-efi --efi-directory=/run/media/root/r\t --boot-directory=/run/media/root/r\t/boot/grub/x86_64-efi grub-install --recheck --removable --target=i386-pc --boot-directory=/run/media/root/r\t/boot/grub/i386-pc /dev/sdb before the two commands, you should already have the target partition mounted on the right place( here is /run/media/root/r\t/ ), the i386-pc targets need write data to mbr, while the x86_64-efi boot from efi excutable file which is loaded directly by bios with uefi support, that's a feature of uefi. As for 'secure boot', it's so called but it prohibit any loader unsigned or signed with a wrong key( more often the key belongs to Microsoft, but for some machine you can also install your own key), about how to boot with secure boot on, here is some more detailed refrence: www.rodsbooks.com/efi-bootloaders/index.html an announcement about 'secure boot' by fsf two or three years ago: http://www.fsf.org/campaigns/secure-boot-vs-restricted-boot/statement the two targets share nearly the same configurations which are located in /boot/grub/grub2_share/cfg, some file were removed to shrink the file size, so it's not ready to boot, but the arrangement of the file can be referenced. the main file for sagemath is placed in the same path as they are arranged in the live img, here in my USB flash, it's the directory '/live', the corresponding configuration is in 0_gnu_linux.cfg. among the files, /boot/grub/grub2_share/cfg/*.cfg and /boot/grub/$target/grub/grub.cfg is what you can refer, the other files were left just in case that you need. 在 2015年7月25日星期六 UTC+8下午7:50:01，rt.写道： e.. not really, I'm just a junior student now and interested in computer techniques. sorry to reply so late, we are having a field work and these days it seems that the ipv6 was not available or not stable enough, I was blocked and can't have access to google, so is this forum. Just now, I tried several times and finally I am lucky to send this message! grub2 is of course a free software, it's also made by GNU project as an update to legacy grub! As for my grub2 configuration, it seems that it will take some space to write it. I will try to conclude it here. Besides, you can find more instruction about it in the official manual. there is a great chance that you will have to fsck your usb flash disk, at leastfor sage live 6.5 or earlier 6.4, but that's easy to deal with and still acceptable. for the new version 6.7, I'm not sure as my laptop is now more convinient, so I haven't got to try the new version now. It should be claimed that not only sagemath, but also many live cd would couase the problem, and sagemath have tried to deal with this issue through several more convenient methods, though it's not auto done now. it is little long to say about the boot mode uefi and legacy bios, it's better that you find the explanation somewhere else, two place I recommend is the uefi official webset and tiannocore, as I first learned it from all kinds of forum, most of which were wrote in Chinese ... as for matlab, I just leared little, and it was already one year ago. as now I don't want to spend much time on it, I can't tell much about it, sorry. However, for matlab, there is a big problem, it's not free, not only the charge but also not open source; also, it takes lots of disk space( my hard disk is just a little inadequate to save all my files). Several weeks ago, I tried ansys under the linux, finaly got defeated and will never want to have ansys installed on linux again, there is so many troubles with it, and hardly have documents, I'm afraid that matlab would have the same circumstance, but that's just the third reason. Now sagemath is just powerful enough and script is so convenient to use. With additional tools, like a frontend( for example texmacs, with witch the formula displayed is easy to read ), it can meet nearly all what I need, there is no reason for me to try matlab again. maybe later I will try to add a map to illustrate how the grub2 works for my USB flash, hoping the net will hold on ... it seems it's no easy to upload files here, I will try to make it later.. 在 2015年7月22日星期三 UTC+8上午3:35:08，Dominique Laurain写道： Hi rt, you are advanced student, aren't you ? ... :-) yes, it will be good to share about grub2
[sage-devel] Re: Uganda teaching feedback
Hearing the class for students about using sage, I'm a little excited. As I'm also a student, and got to know sage by accident at the begining of last year, I am just expecting for a more widely usage of sage on educational teaching class in China, as now here in the Univercities of China, more often matlab was introduced or even tought to students rather than haveing it as an alternative subject that students can choose if they want. For me, I don't like these commercial software about science and math related. However, most students just don't even know more alternative free and powerful software in these fields, and there is nearly no related reference for sagemath and so kind software. I don't think this case is ok for us students. And so I'm really hoping that you can make a big hit for sagemath applied to education. Thierry is still so warmhearted, he has helped a lot for me to have a better accese to sage, and now the main OS I'm using is gentoo, it's very convenient to use sage and sage have been working very well when applied to several subjects that I am learning. Just in last week I tried to use sage to do a test over a possibility problem that my classmate asked, sage did a good job! As for the problem you referred, I agree with Thierry that the live boot media is the best way to have a quick access to sage also with almost all the features included. now I'm having a usb stick with a lot live isos stored and managed by grub2, sagemath is of course included, it can be boot with either legacy bios or uefi so long as the secure boot is turned of or a more complicated method should be applied to handle the case. Grub2 is very flexible and can be used to boot sagemath directly from the squashfs file in spite of the position where the file is located, so the squashfs can be placed in the hard disk and the usb stick is only needed to load the boot process, thus the speed and stability should be of no problem, and the demand for more USB sticks is also sovled( when install grub2 to the hard disk, it's of no need for USB stick). If needed, I'm happy to share the grub2 configuration. 在 2015年7月18日星期六 UTC+8上午2:00:49，Viviane Pons写道： Dear all, this last week, I was giving a class in a summer school in Uganda, along with Jennifer Balakrishnan, on experimental mathematics (mine was combinatorics and Jennifer's was number theory). Both classes were based on Sage. Let me give you a feedback on using Sage here. Conditions; - around 30 students - limited Internet: the university network was much too slow for us to work with, we were given a special network bought for the school but the data was limited (we had to buy extra data a few times during the week) - every student had his / her own laptop. Only PCs, most of them Windows, 2 or 3 linux (Ubuntu) - most students had very limited computer skills Because of the Internet limitation, SMC was no good solution for everyone to use. We still used it to do some demos, share code, and also as a backup options for the students who couldn't get Sage running. Sage installation: Most of the students didn't have Sage installed, so the first afternoon was devoted to install Sage everywhere. It mostly worked but we sometimes had issues: * hard drive limitations: some hard drive were completely full and VM + Sage was too big to get installed (also their HD was often partitioned in weird ways and the program partition was full) * for some reason, the Sage VM takes forever to load on Windows 8 (which makes it seem broken) Using Sage on the VM: Never had so much Sage on Windows experience before, this was a good test and now here's everything that was wrong and annoying: * Once a Sage virtual machine was in saved mode, it would usually crash on re-openning and we had to discard the saved mode (I guess because their computers were running out of memory) * Sharing files between the VM and Windows was NOT straightforward at all, the Sage explanation were not working (I think you need to change the usergroup in Ubuntu or something like this), at the end I just dropped the idea as I could not do it on all 30 machines at once * And I didn't manage to make them download any notebooks either, because the notebook wouldn't take https addresses, so actually I had no way to share notebooks with them!! (except on SMC) * pdflatex wasn't installed by default which for me was a real problem as I use it a lot to print combinatorial objects (thank you Jean-Baptiste for the ascii art on binary trees, it saved me a bit!). And because of internet limitations and the lack of Ubuntu knowledge from my students, it was not really possible to install it on all their machines (I mean the VM) * I couldn't get the VM to show multiple windows and not even multiple tabs. This was so annoying... Sometimes a student would click on a link on a notebook and there was no way of going back to where
Re: [sage-devel] sage 6.7 failed to load jmol to display 3d object
In fact, I'm not sure is the java in my notebook have anything to do with
oracle, as I have only installed the Free Software icedtea for java
dependancies. Unluckily, icedtea which was built on my laptop doesn't work
well as icedtea-bin which was compiled by gentoo official for saving the
time of compilation.
However, you have really done a great job! Sagemath have helped a lot in my
math and some related subjects study. I have a preference for free software
and I do believe that sage will have more great influence on math and
science related software, as this kind of software helps us learn more
basic knowledge, they shouldn't have been put into commercial chains.
Best wishes to sagemath!
在 2015年7月15日星期三 UTC+8下午7:57:37，François写道：
In your original report you were using oracle java. Could be a
compatibility problem but
then in jmol.
We probably could do a better packaging job with jmol but it is a bit of a
headache.
François
On 15/07/2015, at 23:52, rt. rtgi...@gmail.com javascript: wrote:
it seems that it's the icedtea who have caused the problem, I tried to
emerged icedtea-bin and set it to be the system java-vm, and Jmol was
invoked and behaved as it should be, maybe I should post a bug for icedtea
在 2015年7月14日星期二 UTC+8上午9:39:44，François写道：
What about posting /root/.sage/temp/rt./12958/tmp_KGOIjb.txt” or its
equivalent when run
as a normal user?
I will only be able to test this tomorrow when I get physical access to
a
machine with sage-on-gentoo.
François
On 14/07/2015, at 13:35, rt. rtgi...@gmail.com wrote:
I just switch to a normal user, it still returns the same error. And
before this, I am always using root to do the daily job, and sage works
well.
(just for convinience, these days I'm considering rearrange my system,
and maybe, a normal user will be applied to do the daily job)
thanks! :)
在 2015年7月14日星期二 UTC+8上午9:23:17，François写道：
I think your problem is because you are running sage as root, but from
a
normal user session. The big clue is that your $DOT_SAGE folder is
“/root/.sage”. Please try as a normal user.
François
On 14/07/2015, at 13:14, rt. rtgi...@gmail.com wrote:
this seems not to be my case, as François said, this problem should
have been posted for sage-on-gentoo, while I haven't realized it before.
Thank you all the same!
在 2015年7月14日星期二 UTC+8上午1:37:06，Volker Braun写道：
Confirmed, this is http://trac.sagemath.org/ticket/18891
Run sage -i jmol to fix it for now.
On Monday, July 13, 2015 at 7:14:03 PM UTC+2, rt. wrote:
this is a newly built version together with gentoo, while the other
functions works well with only 3d plot failed.
As I excute the following command:
sage: var('x,y')
sage: plot3d(sin(x*y), (x, -pi, pi), (y, -pi, pi))
it returns :
/usr/lib64/python2.7/site-packages/sage/repl/rich_output/display_manager.py:561:
RichReprWarning: Exception in _rich_repr_ while displaying object: Jmol
failed to create file '/root/.sage/temp/rt./12958/dir_W9ZHtR/preview.png',
see '/root/.sage/temp/rt./12958/tmp_KGOIjb.txt' for details
RichReprWarning,
Graphics3d Object
Not knowing what's going wrong, I have rebuild Jmol, but it changed
nothing
maybe I can find the solution or reason here, and just around these
days, thanks to any help very much.
If needed, more information would be provided (as now I don't know
what's neesded.
Thanks very much!
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Re: [sage-devel] sage 6.7 failed to load jmol to display 3d object
it seems that it's the icedtea who have caused the problem, I tried to
emerged icedtea-bin and set it to be the system java-vm, and Jmol was
invoked and behaved as it should be, maybe I should post a bug for icedtea
在 2015年7月14日星期二 UTC+8上午9:39:44，François写道：
What about posting /root/.sage/temp/rt./12958/tmp_KGOIjb.txt” or its
equivalent when run
as a normal user?
I will only be able to test this tomorrow when I get physical access to a
machine with sage-on-gentoo.
François
On 14/07/2015, at 13:35, rt. rtgi...@gmail.com javascript: wrote:
I just switch to a normal user, it still returns the same error. And
before this, I am always using root to do the daily job, and sage works
well.
(just for convinience, these days I'm considering rearrange my system,
and maybe, a normal user will be applied to do the daily job)
thanks! :)
在 2015年7月14日星期二 UTC+8上午9:23:17，François写道：
I think your problem is because you are running sage as root, but from a
normal user session. The big clue is that your $DOT_SAGE folder is
“/root/.sage”. Please try as a normal user.
François
On 14/07/2015, at 13:14, rt. rtgi...@gmail.com wrote:
this seems not to be my case, as François said, this problem should
have been posted for sage-on-gentoo, while I haven't realized it before.
Thank you all the same!
在 2015年7月14日星期二 UTC+8上午1:37:06，Volker Braun写道：
Confirmed, this is http://trac.sagemath.org/ticket/18891
Run sage -i jmol to fix it for now.
On Monday, July 13, 2015 at 7:14:03 PM UTC+2, rt. wrote:
this is a newly built version together with gentoo, while the other
functions works well with only 3d plot failed.
As I excute the following command:
sage: var('x,y')
sage: plot3d(sin(x*y), (x, -pi, pi), (y, -pi, pi))
it returns :
/usr/lib64/python2.7/site-packages/sage/repl/rich_output/display_manager.py:561:
RichReprWarning: Exception in _rich_repr_ while displaying object: Jmol
failed to create file '/root/.sage/temp/rt./12958/dir_W9ZHtR/preview.png',
see '/root/.sage/temp/rt./12958/tmp_KGOIjb.txt' for details
RichReprWarning,
Graphics3d Object
Not knowing what's going wrong, I have rebuild Jmol, but it changed
nothing
maybe I can find the solution or reason here, and just around these
days, thanks to any help very much.
If needed, more information would be provided (as now I don't know
what's neesded.
Thanks very much!
--
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[sage-devel] sage 6.7 failed to load jmol to display 3d object
this is a newly built version together with gentoo, while the other
functions works well with only 3d plot failed.
As I excute the following command:
sage: var('x,y')
sage: plot3d(sin(x*y), (x, -pi, pi), (y, -pi, pi))
it returns :
/usr/lib64/python2.7/site-packages/sage/repl/rich_output/display_manager.py:561:
RichReprWarning: Exception in _rich_repr_ while displaying object: Jmol
failed to create file '/root/.sage/temp/rt./12958/dir_W9ZHtR/preview.png',
see '/root/.sage/temp/rt./12958/tmp_KGOIjb.txt' for details
RichReprWarning,
Graphics3d Object
Not knowing what's going wrong, I have rebuild Jmol, but it changed nothing
maybe I can find the solution or reason here, and just around these days,
thanks to any help very much.
If needed, more information would be provided (as now I don't know what's
neesded.
Thanks very much!
--
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sage-devel group.
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[sage-devel] Re: sage 6.7 failed to load jmol to display 3d object
this seems not to be my case, as François said, this problem should have
been posted for sage-on-gentoo, while I haven't realized it before.
Thank you all the same!
在 2015年7月14日星期二 UTC+8上午1:37:06，Volker Braun写道：
Confirmed, this is http://trac.sagemath.org/ticket/18891
Run sage -i jmol to fix it for now.
On Monday, July 13, 2015 at 7:14:03 PM UTC+2, rt. wrote:
this is a newly built version together with gentoo, while the other
functions works well with only 3d plot failed.
As I excute the following command:
sage: var('x,y')
sage: plot3d(sin(x*y), (x, -pi, pi), (y, -pi, pi))
it returns :
/usr/lib64/python2.7/site-packages/sage/repl/rich_output/display_manager.py:561:
RichReprWarning: Exception in _rich_repr_ while displaying object: Jmol
failed to create file '/root/.sage/temp/rt./12958/dir_W9ZHtR/preview.png',
see '/root/.sage/temp/rt./12958/tmp_KGOIjb.txt' for details
RichReprWarning,
Graphics3d Object
Not knowing what's going wrong, I have rebuild Jmol, but it changed
nothing
maybe I can find the solution or reason here, and just around these days,
thanks to any help very much.
If needed, more information would be provided (as now I don't know what's
neesded.
Thanks very much!
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Re: [sage-devel] sage 6.7 failed to load jmol to display 3d object
It's strange that all the file in the directory is empty，and I find
scene.spt.zip
in the subdirectory，but when try to display it directly with Jmol:
jmol /root/.sage/temp/rt./29736/dir_fz8ajw/scene.spt.zip
splash_image=jar:file:/usr/share/sage-jmol-bin/lib/Jmol.jar!/org/openscience/jmol/app/images/Jmol_splash.jpg
history file is /root/.jmol/history
(C) 2012 Jmol Development
Jmol Version: 14.2.11_2015.01.20 2015-01-20 12:29
java.vendor: Java: Oracle Corporation
java.version: Java 1.7.0_79
os.name: Linux
Access: ALL
memory: 44.5/97.4
processors available: 4
useCommandThread: false
User macros dir: /root/.jmol/macros
exists: false
isDirectory: false
Executing script: load
/root/.sage/temp/rt./29736/dir_fz8ajw/scene.spt.zip;
FileManager.getAtomSetCollectionFromFile(/root/.sage/temp/rt./29736/dir_fz8ajw/scene.spt.zip)
cacheGet file://root/.sage/temp/rt./29736/dir_fz8ajw/scene.spt.zip false
cacheGet file://root/.sage/temp/rt./29736/dir_fz8ajw/scene.spt.zip false
FileManager opening 2 /root/.sage/temp/rt./29736/dir_fz8ajw/scene.spt.zip
cacheGet file://root/.sage/temp/rt./29736/dir_fz8ajw/scene.spt.zip false
cacheGet file://root/.sage/temp/rt./29736/dir_fz8ajw/scene.spt.zip false
The Resolver thinks Xyz
line cannot be read for XYZ atom data: -3 -2.84615 0.0919047
line cannot be read for XYZ atom data: -3 -2.69231 0.806228
...
line cannot be read for XYZ atom data: 2.69231 -1.61538 1.4976
line cannot be read for XYZ atom data: 2.69231 2.69231 1.49328
line cannot be read for XYZ atom data: 2.84615 1.46154 -1.48303
line cannot be read for XYZ atom data: 2.84615 2.53846 1.49646
line cannot be read for XYZ atom data: 1521
line cannot be read for XYZ atom data: 1
line cannot be read for XYZ atom data: 41
line cannot be read for XYZ atom data: 40
...
I'm wondering is there something wrong with the data file
在 2015年7月14日星期二 UTC+8上午3:28:16，François写道：
Hi rt,
sage-on-gentoo bugs are best discussed in a github issue unless you
can reproduce it in a “vanilla” sage build. Github issue for
sage-on-gentoo:
https://github.com/cschwan/sage-on-gentoo/issues
Funny that your message lead Volker to something that was wrong
in vanilla when your problem is unrelated. Volker's advice is not
applicable
to your install since “sage -i” doesn’t exist in sage-on-gentoo.
Can you post /root/.sage/temp/rt./12958/tmp_KGOIjb.txt” so I can try
to figure it out.
François
On 14/07/2015, at 04:50, rt. rtgi...@gmail.com javascript: wrote:
this is a newly built version together with gentoo, while the other
functions works well with only 3d plot failed.
As I excute the following command:
sage: var('x,y')
sage: plot3d(sin(x*y), (x, -pi, pi), (y, -pi, pi))
it returns :
/usr/lib64/python2.7/site-packages/sage/repl/rich_output/display_manager.py:561:
RichReprWarning: Exception in _rich_repr_ while displaying object: Jmol
failed to create file '/root/.sage/temp/rt./12958/dir_W9ZHtR/preview.png',
see '/root/.sage/temp/rt./12958/tmp_KGOIjb.txt' for details
RichReprWarning,
Graphics3d Object
Not knowing what's going wrong, I have rebuild Jmol, but it changed
nothing
maybe I can find the solution or reason here, and just around these
days, thanks to any help very much.
If needed, more information would be provided (as now I don't know
what's neesded.
Thanks very much!
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Re: [sage-devel] sage 6.7 failed to load jmol to display 3d object
I just switch to a normal user, it still returns the same error. And before
this, I am always using root to do the daily job, and sage works well.
(just for convinience, these days I'm considering rearrange my system, and
maybe, a normal user will be applied to do the daily job)
thanks! :)
在 2015年7月14日星期二 UTC+8上午9:23:17，François写道：
I think your problem is because you are running sage as root, but from a
normal user session. The big clue is that your $DOT_SAGE folder is
“/root/.sage”. Please try as a normal user.
François
On 14/07/2015, at 13:14, rt. rtgi...@gmail.com javascript: wrote:
this seems not to be my case, as François said, this problem should have
been posted for sage-on-gentoo, while I haven't realized it before.
Thank you all the same!
在 2015年7月14日星期二 UTC+8上午1:37:06，Volker Braun写道：
Confirmed, this is http://trac.sagemath.org/ticket/18891
Run sage -i jmol to fix it for now.
On Monday, July 13, 2015 at 7:14:03 PM UTC+2, rt. wrote:
this is a newly built version together with gentoo, while the other
functions works well with only 3d plot failed.
As I excute the following command:
sage: var('x,y')
sage: plot3d(sin(x*y), (x, -pi, pi), (y, -pi, pi))
it returns :
/usr/lib64/python2.7/site-packages/sage/repl/rich_output/display_manager.py:561:
RichReprWarning: Exception in _rich_repr_ while displaying object: Jmol
failed to create file '/root/.sage/temp/rt./12958/dir_W9ZHtR/preview.png',
see '/root/.sage/temp/rt./12958/tmp_KGOIjb.txt' for details
RichReprWarning,
Graphics3d Object
Not knowing what's going wrong, I have rebuild Jmol, but it changed
nothing
maybe I can find the solution or reason here, and just around these
days, thanks to any help very much.
If needed, more information would be provided (as now I don't know
what's neesded.
Thanks very much!
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Re: [sage-devel] sage 6.7 failed to load jmol to display 3d object
when excuted as a regular user, this file still comes with empty contents.
It's indeed no easy to diagnose sage-on-gentoo with no sage-on-gentoo on
the computer, now that
I have got to know the more appropriate place to report the bug, I'd better
to file bugs there later.
thanks! :)
在 2015年7月14日星期二 UTC+8上午9:39:44，François写道：
What about posting /root/.sage/temp/rt./12958/tmp_KGOIjb.txt” or its
equivalent when run
as a normal user?
I will only be able to test this tomorrow when I get physical access to a
machine with sage-on-gentoo.
François
On 14/07/2015, at 13:35, rt. rtgi...@gmail.com javascript: wrote:
I just switch to a normal user, it still returns the same error. And
before this, I am always using root to do the daily job, and sage works
well.
(just for convinience, these days I'm considering rearrange my system,
and maybe, a normal user will be applied to do the daily job)
thanks! :)
在 2015年7月14日星期二 UTC+8上午9:23:17，François写道：
I think your problem is because you are running sage as root, but from a
normal user session. The big clue is that your $DOT_SAGE folder is
“/root/.sage”. Please try as a normal user.
François
On 14/07/2015, at 13:14, rt. rtgi...@gmail.com wrote:
this seems not to be my case, as François said, this problem should
have been posted for sage-on-gentoo, while I haven't realized it before.
Thank you all the same!
在 2015年7月14日星期二 UTC+8上午1:37:06，Volker Braun写道：
Confirmed, this is http://trac.sagemath.org/ticket/18891
Run sage -i jmol to fix it for now.
On Monday, July 13, 2015 at 7:14:03 PM UTC+2, rt. wrote:
this is a newly built version together with gentoo, while the other
functions works well with only 3d plot failed.
As I excute the following command:
sage: var('x,y')
sage: plot3d(sin(x*y), (x, -pi, pi), (y, -pi, pi))
it returns :
/usr/lib64/python2.7/site-packages/sage/repl/rich_output/display_manager.py:561:
RichReprWarning: Exception in _rich_repr_ while displaying object: Jmol
failed to create file '/root/.sage/temp/rt./12958/dir_W9ZHtR/preview.png',
see '/root/.sage/temp/rt./12958/tmp_KGOIjb.txt' for details
RichReprWarning,
Graphics3d Object
Not knowing what's going wrong, I have rebuild Jmol, but it changed
nothing
maybe I can find the solution or reason here, and just around these
days, thanks to any help very much.
If needed, more information would be provided (as now I don't know
what's neesded.
Thanks very much!
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